Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_005044 and ABIE53_005045 are separated by 247 nucleotides ABIE53_005045 and ABIE53_005046 are separated by 24 nucleotides ABIE53_005046 and ABIE53_005047 are separated by 44 nucleotides ABIE53_005047 and ABIE53_005048 are separated by 244 nucleotides
ABIE53_005044: ABIE53_005044 - putative AcnD-accessory protein PrpF, at 1,287,620 to 1,288,807
_005044
ABIE53_005045: ABIE53_005045 - hypothetical protein, at 1,289,055 to 1,289,495
_005045
ABIE53_005046: ABIE53_005046 - uncharacterized protein (DUF305 family), at 1,289,520 to 1,289,933
_005046
ABIE53_005047: ABIE53_005047 - copper chaperone, at 1,289,978 to 1,290,181
_005047
ABIE53_005048: ABIE53_005048 - tetratricopeptide (TPR) repeat protein, at 1,290,426 to 1,292,015
_005048
Position (kb) 1289
1290 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 1288.900 kb on - strand at 1288.915 kb on - strand at 1289.204 kb on + strand, within ABIE53_005045 at 1289.896 kb on - strand at 1289.896 kb on - strand at 1289.934 kb on - strand at 1289.934 kb on - strand at 1289.971 kb on + strand at 1289.971 kb on + strand at 1290.155 kb on - strand, within ABIE53_005047 at 1290.235 kb on - strand at 1290.267 kb on + strand at 1290.267 kb on + strand at 1290.268 kb on - strand at 1290.268 kb on - strand at 1290.308 kb on + strand at 1290.585 kb on + strand, within ABIE53_005048 at 1290.586 kb on - strand, within ABIE53_005048 at 1290.786 kb on + strand, within ABIE53_005048 at 1290.786 kb on + strand, within ABIE53_005048 at 1290.786 kb on + strand, within ABIE53_005048 at 1290.786 kb on + strand, within ABIE53_005048 at 1290.843 kb on + strand, within ABIE53_005048
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 1,288,900 - -1.9 1,288,915 - -1.1 1,289,204 + ABIE53_005045 0.34 -0.7 1,289,896 - +1.8 1,289,896 - +0.3 1,289,934 - -1.3 1,289,934 - -0.3 1,289,971 + -0.7 1,289,971 + +1.3 1,290,155 - ABIE53_005047 0.87 -0.1 1,290,235 - +2.5 1,290,267 + +2.2 1,290,267 + +0.3 1,290,268 - -0.1 1,290,268 - -2.2 1,290,308 + -1.3 1,290,585 + ABIE53_005048 0.10 +0.3 1,290,586 - ABIE53_005048 0.10 +3.0 1,290,786 + ABIE53_005048 0.23 -3.9 1,290,786 + ABIE53_005048 0.23 -0.9 1,290,786 + ABIE53_005048 0.23 +0.1 1,290,786 + ABIE53_005048 0.23 -0.2 1,290,843 + ABIE53_005048 0.26 +1.3
Or see this region's nucleotide sequence