Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004345 and ABIE53_004346 overlap by 4 nucleotides ABIE53_004346 and ABIE53_004347 are separated by 198 nucleotides ABIE53_004347 and ABIE53_004348 are separated by 32 nucleotides
ABIE53_004345: ABIE53_004345 - peptide/nickel transport system ATP-binding protein, at 521,538 to 522,446
_004345
ABIE53_004346: ABIE53_004346 - peptide/nickel transport system ATP-binding protein, at 522,443 to 523,210
_004346
ABIE53_004347: ABIE53_004347 - branched-chain amino acid transport system substrate-binding protein, at 523,409 to 524,557
_004347
ABIE53_004348: ABIE53_004348 - membrane dipeptidase, at 524,590 to 526,062
_004348
Position (kb) 523
524
525 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 522.581 kb on - strand, within ABIE53_004346 at 522.692 kb on + strand, within ABIE53_004346 at 522.750 kb on + strand, within ABIE53_004346 at 522.751 kb on - strand, within ABIE53_004346 at 522.751 kb on - strand, within ABIE53_004346 at 522.751 kb on - strand, within ABIE53_004346 at 523.256 kb on + strand at 523.370 kb on + strand at 523.370 kb on + strand at 523.370 kb on + strand at 523.370 kb on + strand at 523.747 kb on + strand, within ABIE53_004347 at 523.766 kb on + strand, within ABIE53_004347 at 523.808 kb on - strand, within ABIE53_004347 at 523.892 kb on + strand, within ABIE53_004347 at 523.892 kb on + strand, within ABIE53_004347 at 524.166 kb on - strand, within ABIE53_004347 at 524.246 kb on + strand, within ABIE53_004347 at 524.246 kb on + strand, within ABIE53_004347 at 524.345 kb on + strand, within ABIE53_004347 at 524.505 kb on - strand at 524.635 kb on + strand at 524.636 kb on - strand at 524.636 kb on - strand at 524.636 kb on - strand at 524.696 kb on - strand at 525.022 kb on - strand, within ABIE53_004348 at 525.123 kb on - strand, within ABIE53_004348 at 525.145 kb on + strand, within ABIE53_004348 at 525.145 kb on + strand, within ABIE53_004348 at 525.145 kb on + strand, within ABIE53_004348 at 525.145 kb on + strand, within ABIE53_004348 at 525.145 kb on + strand, within ABIE53_004348 at 525.146 kb on - strand, within ABIE53_004348 at 525.146 kb on - strand, within ABIE53_004348 at 525.161 kb on + strand, within ABIE53_004348 at 525.175 kb on - strand, within ABIE53_004348 at 525.338 kb on + strand, within ABIE53_004348 at 525.339 kb on - strand, within ABIE53_004348 at 525.340 kb on + strand, within ABIE53_004348 at 525.340 kb on + strand, within ABIE53_004348 at 525.340 kb on + strand, within ABIE53_004348 at 525.341 kb on - strand, within ABIE53_004348
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 522,581 - ABIE53_004346 0.18 +1.5 522,692 + ABIE53_004346 0.32 -1.5 522,750 + ABIE53_004346 0.40 +1.9 522,751 - ABIE53_004346 0.40 +4.6 522,751 - ABIE53_004346 0.40 +0.9 522,751 - ABIE53_004346 0.40 -0.8 523,256 + +1.0 523,370 + +0.5 523,370 + -0.1 523,370 + -0.7 523,370 + -1.7 523,747 + ABIE53_004347 0.29 +1.9 523,766 + ABIE53_004347 0.31 +4.1 523,808 - ABIE53_004347 0.35 +1.4 523,892 + ABIE53_004347 0.42 +2.0 523,892 + ABIE53_004347 0.42 +0.4 524,166 - ABIE53_004347 0.66 +2.6 524,246 + ABIE53_004347 0.73 +1.2 524,246 + ABIE53_004347 0.73 +1.3 524,345 + ABIE53_004347 0.81 -2.2 524,505 - -0.1 524,635 + -1.1 524,636 - +0.4 524,636 - +0.8 524,636 - -0.3 524,696 - -2.4 525,022 - ABIE53_004348 0.29 +1.3 525,123 - ABIE53_004348 0.36 -1.7 525,145 + ABIE53_004348 0.38 -1.7 525,145 + ABIE53_004348 0.38 +1.2 525,145 + ABIE53_004348 0.38 -0.0 525,145 + ABIE53_004348 0.38 -2.3 525,145 + ABIE53_004348 0.38 -0.5 525,146 - ABIE53_004348 0.38 -0.3 525,146 - ABIE53_004348 0.38 +1.3 525,161 + ABIE53_004348 0.39 -0.1 525,175 - ABIE53_004348 0.40 -0.7 525,338 + ABIE53_004348 0.51 +0.5 525,339 - ABIE53_004348 0.51 -1.0 525,340 + ABIE53_004348 0.51 -0.0 525,340 + ABIE53_004348 0.51 -1.9 525,340 + ABIE53_004348 0.51 +0.3 525,341 - ABIE53_004348 0.51 -1.7
Or see this region's nucleotide sequence