Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_002933

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
3,313,855	-		ABIE53_002931	0.83	-1.5
3,313,881	-				-1.6
3,313,989	+		ABIE53_002932	0.10	-0.5
3,313,989	+		ABIE53_002932	0.10	-0.7
3,313,989	+		ABIE53_002932	0.10	-0.0
3,313,989	+		ABIE53_002932	0.10	-0.5
3,313,989	+		ABIE53_002932	0.10	-1.3
3,313,989	+		ABIE53_002932	0.10	-3.7
3,313,989	+		ABIE53_002932	0.10	-1.8
3,313,989	+		ABIE53_002932	0.10	-2.1
3,313,989	+		ABIE53_002932	0.10	+3.0
3,313,989	+		ABIE53_002932	0.10	+1.0
3,313,989	+		ABIE53_002932	0.10	-1.3
3,313,989	+		ABIE53_002932	0.10	-0.8
3,313,989	+		ABIE53_002932	0.10	+0.0
3,313,989	+		ABIE53_002932	0.10	-2.4
3,313,989	+		ABIE53_002932	0.10	+1.0
3,313,989	+		ABIE53_002932	0.10	+0.3
3,313,990	-		ABIE53_002932	0.10	+0.0
3,313,990	-		ABIE53_002932	0.10	+0.0
3,313,990	-		ABIE53_002932	0.10	-0.5
3,313,990	-		ABIE53_002932	0.10	-0.6
3,313,990	-		ABIE53_002932	0.10	-0.5
3,313,990	-		ABIE53_002932	0.10	-3.2
3,313,990	-		ABIE53_002932	0.10	-1.4
3,313,990	-		ABIE53_002932	0.10	-0.7
3,313,990	-		ABIE53_002932	0.10	-1.3
3,313,990	-		ABIE53_002932	0.10	+0.3
3,313,990	-		ABIE53_002932	0.10	-2.7
3,313,990	-		ABIE53_002932	0.10	-1.9
3,313,990	-		ABIE53_002932	0.10	-1.7
3,313,990	-		ABIE53_002932	0.10	-2.7
3,313,990	-		ABIE53_002932	0.10	-1.8
3,313,990	-		ABIE53_002932	0.10	-1.5
3,314,142	+		ABIE53_002932	0.28	-0.2
3,314,308	-		ABIE53_002932	0.47	+1.0
3,314,308	-		ABIE53_002932	0.47	-1.3
3,314,385	+		ABIE53_002932	0.56	-0.1
3,314,386	-		ABIE53_002932	0.56	-0.6
3,314,386	-		ABIE53_002932	0.56	-1.8
3,314,386	-		ABIE53_002932	0.56	-0.5
3,314,386	-		ABIE53_002932	0.56	-2.3
3,314,386	-		ABIE53_002932	0.56	+1.0
3,314,418	+		ABIE53_002932	0.60	-3.2
3,314,419	-		ABIE53_002932	0.60	+0.6
3,314,419	-		ABIE53_002932	0.60	-1.8
3,314,419	-		ABIE53_002932	0.60	-1.1
3,314,419	-		ABIE53_002932	0.60	-1.5
3,314,475	+		ABIE53_002932	0.67	+1.9
3,314,475	+		ABIE53_002932	0.67	-0.4
3,314,475	+		ABIE53_002932	0.67	-2.5
3,314,475	+		ABIE53_002932	0.67	-1.8
3,314,476	-		ABIE53_002932	0.67	-1.5
3,314,476	-		ABIE53_002932	0.67	-1.3
3,314,476	-		ABIE53_002932	0.67	-0.5
3,314,476	-		ABIE53_002932	0.67	+1.5
3,314,476	-		ABIE53_002932	0.67	-1.0
3,314,481	+		ABIE53_002932	0.67	-2.9
3,314,481	+		ABIE53_002932	0.67	-0.6
3,314,481	+		ABIE53_002932	0.67	-0.5
3,314,482	-		ABIE53_002932	0.67	+1.0
3,314,514	-		ABIE53_002932	0.71	-1.3
3,314,514	-		ABIE53_002932	0.71	+0.7
3,314,592	+		ABIE53_002932	0.80	-4.0
3,314,592	+		ABIE53_002932	0.80	-2.9
3,314,593	-		ABIE53_002932	0.80	+0.5
3,314,593	-		ABIE53_002932	0.80	-0.8
3,314,593	-		ABIE53_002932	0.80	-2.4
3,314,593	-		ABIE53_002932	0.80	-1.3
3,314,593	-		ABIE53_002932	0.80	+1.0
3,314,732	+				-2.4
3,314,732	+				-1.0
3,314,732	+				-1.9
3,314,733	-				-1.5
3,314,733	-				-1.3
3,314,773	+				+1.0
3,314,789	+				+1.0
3,314,789	+				+1.0
3,314,789	+				-0.9
3,314,789	+				+0.5
3,314,789	+				-2.3
3,314,789	+				-2.3
3,314,789	+				+2.6
3,314,789	+				-1.5
3,314,790	-				-1.2
3,314,790	-				-1.0
3,314,790	-				-1.3
3,314,790	-				-0.5
3,314,790	-				-0.6
3,314,790	-				+2.0
3,314,790	-				+1.0
3,314,790	-				-2.0
3,314,791	+				-0.7
3,314,791	+				-2.3
3,314,791	+				+0.0
3,314,791	+				-0.5
3,314,791	+				-2.1
3,314,791	+				-0.8
3,314,791	+				-2.5
3,314,791	+				-0.2
3,314,791	+				+0.6
3,314,791	+				+1.2
3,314,792	-				+1.6
3,314,792	-				-1.1
3,314,792	-				-1.3
3,314,792	-				-0.9
3,314,792	-				-0.5
3,314,792	-				+1.0
3,314,792	-				-0.2
3,314,792	-				+2.0
3,314,800	+				-1.2
3,314,800	+				-0.4
3,314,800	+				-0.1
3,314,800	+				+1.0
3,314,800	+				+0.7
3,314,800	+				-0.3
3,314,800	+				-0.8
3,314,800	+				+0.4
3,314,801	-				-1.0
3,314,801	-				+3.0
3,315,224	+		ABIE53_002933	0.67	-3.8
3,315,224	+		ABIE53_002933	0.67	-1.3
3,315,224	+		ABIE53_002933	0.67	+0.0
3,315,224	+		ABIE53_002933	0.67	+1.8
3,315,224	+		ABIE53_002933	0.67	-2.0
3,315,360	-				-1.4
3,315,360	-				-1.1
3,315,546	+		ABIE53_002934	0.16	+0.0
3,315,593	+		ABIE53_002934	0.20	-2.8
3,315,593	+		ABIE53_002934	0.20	+1.0
3,315,593	+		ABIE53_002934	0.20	-2.8
3,315,615	+		ABIE53_002934	0.22	+3.3
3,315,615	+		ABIE53_002934	0.22	-2.4
3,315,616	-		ABIE53_002934	0.22	-1.3
3,315,616	-		ABIE53_002934	0.22	-1.5
3,315,616	-		ABIE53_002934	0.22	+0.4
3,315,616	-		ABIE53_002934	0.22	-0.7
3,315,616	-		ABIE53_002934	0.22	+1.0
3,315,680	+		ABIE53_002934	0.27	-2.8
3,315,681	-		ABIE53_002934	0.27	-0.5
3,315,797	+		ABIE53_002934	0.37	-2.3
3,315,797	+		ABIE53_002934	0.37	-3.8
3,315,797	+		ABIE53_002934	0.37	-0.5
3,315,798	-		ABIE53_002934	0.37	-4.3
3,315,798	-		ABIE53_002934	0.37	+1.2
3,315,798	-		ABIE53_002934	0.37	-0.2
3,315,798	-		ABIE53_002934	0.37	+1.4
3,315,798	-		ABIE53_002934	0.37	-1.3
3,315,798	-		ABIE53_002934	0.37	+0.0
3,315,798	-		ABIE53_002934	0.37	-0.5
3,315,798	-		ABIE53_002934	0.37	+0.0
3,316,058	+		ABIE53_002934	0.59	+2.3
3,316,058	+		ABIE53_002934	0.59	-1.8
3,316,058	+		ABIE53_002934	0.59	+0.1
3,316,058	+		ABIE53_002934	0.59	-1.1
3,316,058	+		ABIE53_002934	0.59	+0.4
3,316,058	+		ABIE53_002934	0.59	-1.1
3,316,059	-		ABIE53_002934	0.59	+0.4
3,316,059	-		ABIE53_002934	0.59	-0.3
3,316,059	-		ABIE53_002934	0.59	+0.9
3,316,059	-		ABIE53_002934	0.59	-2.0
3,316,059	-		ABIE53_002934	0.59	+3.4
3,316,059	-		ABIE53_002934	0.59	+4.2
3,316,059	-		ABIE53_002934	0.59	+1.2
3,316,059	-		ABIE53_002934	0.59	-2.9
3,316,059	-		ABIE53_002934	0.59	+2.0
3,316,059	-		ABIE53_002934	0.59	+0.5
3,316,107	-		ABIE53_002934	0.63	+2.6
3,316,188	+		ABIE53_002934	0.70	-2.6
3,316,188	+		ABIE53_002934	0.70	+2.9
3,316,188	+		ABIE53_002934	0.70	-0.3
3,316,188	+		ABIE53_002934	0.70	-1.5
3,316,189	-		ABIE53_002934	0.70	+0.7
3,316,189	-		ABIE53_002934	0.70	+1.7
3,316,189	-		ABIE53_002934	0.70	+0.7
3,316,189	-		ABIE53_002934	0.70	-0.5
3,316,189	-		ABIE53_002934	0.70	+0.6
3,316,189	-		ABIE53_002934	0.70	-1.8
3,316,189	-		ABIE53_002934	0.70	+0.7
3,316,237	+		ABIE53_002934	0.74	-0.8
3,316,238	+		ABIE53_002934	0.74	+0.2
3,316,238	+		ABIE53_002934	0.74	-1.4
3,316,238	+		ABIE53_002934	0.74	-0.3
3,316,238	+		ABIE53_002934	0.74	-0.5
3,316,238	+		ABIE53_002934	0.74	-1.5
3,316,238	+		ABIE53_002934	0.74	+0.0
3,316,238	+		ABIE53_002934	0.74	+1.8
3,316,238	+		ABIE53_002934	0.74	-0.4
3,316,239	-		ABIE53_002934	0.74	-1.0
3,316,239	-		ABIE53_002934	0.74	-2.0
3,316,239	-		ABIE53_002934	0.74	+3.0
3,316,239	-		ABIE53_002934	0.74	+0.1
3,316,239	-		ABIE53_002934	0.74	+2.9