Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_001644

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
1,831,284	-		ABIE53_001643	0.28	-0.5
1,831,322	+		ABIE53_001643	0.31	+1.0
1,831,322	+		ABIE53_001643	0.31	-0.4
1,831,323	-		ABIE53_001643	0.31	+1.2
1,831,440	+		ABIE53_001643	0.41	+0.4
1,831,440	+		ABIE53_001643	0.41	+1.7
1,831,440	+		ABIE53_001643	0.41	-3.0
1,831,440	+		ABIE53_001643	0.41	+0.9
1,831,440	+		ABIE53_001643	0.41	-1.5
1,831,440	+		ABIE53_001643	0.41	-0.9
1,831,440	+		ABIE53_001643	0.41	-0.0
1,831,440	+		ABIE53_001643	0.41	-0.2
1,831,441	-		ABIE53_001643	0.41	-2.1
1,831,441	-		ABIE53_001643	0.41	+0.2
1,831,441	-		ABIE53_001643	0.41	+0.1
1,831,441	-		ABIE53_001643	0.41	-0.9
1,831,441	-		ABIE53_001643	0.41	+0.1
1,831,441	-		ABIE53_001643	0.41	-0.3
1,831,441	-		ABIE53_001643	0.41	-0.8
1,831,441	-		ABIE53_001643	0.41	-0.5
1,831,443	+		ABIE53_001643	0.41	-1.9
1,831,443	+		ABIE53_001643	0.41	+2.2
1,831,444	-		ABIE53_001643	0.41	-1.5
1,831,444	-		ABIE53_001643	0.41	+0.6
1,831,444	-		ABIE53_001643	0.41	+1.4
1,831,571	+		ABIE53_001643	0.51	-1.2
1,831,571	+		ABIE53_001643	0.51	-1.9
1,831,571	+		ABIE53_001643	0.51	+1.9
1,831,571	+		ABIE53_001643	0.51	+1.1
1,831,571	+		ABIE53_001643	0.51	+0.8
1,831,571	+		ABIE53_001643	0.51	+0.8
1,831,571	+		ABIE53_001643	0.51	-1.9
1,831,572	-		ABIE53_001643	0.52	+1.1
1,831,572	-		ABIE53_001643	0.52	+3.3
1,831,572	-		ABIE53_001643	0.52	-1.9
1,831,572	-		ABIE53_001643	0.52	+2.3
1,831,656	+		ABIE53_001643	0.58	-2.2
1,831,656	+		ABIE53_001643	0.58	-2.1
1,831,656	+		ABIE53_001643	0.58	+1.2
1,831,656	+		ABIE53_001643	0.58	+2.3
1,831,657	-		ABIE53_001643	0.58	-0.5
1,831,657	-		ABIE53_001643	0.58	-0.5
1,831,660	-		ABIE53_001643	0.59	-1.8
1,831,660	-		ABIE53_001643	0.59	+1.1
1,831,660	-		ABIE53_001643	0.59	+0.5
1,831,660	-		ABIE53_001643	0.59	-0.0
1,831,660	-		ABIE53_001643	0.59	+2.7
1,831,685	+		ABIE53_001643	0.61	-2.5
1,831,686	-		ABIE53_001643	0.61	-0.3
1,831,686	-		ABIE53_001643	0.61	-0.5
1,831,686	-		ABIE53_001643	0.61	+0.1
1,831,686	-		ABIE53_001643	0.61	-0.5
1,831,686	-		ABIE53_001643	0.61	-0.3
1,831,695	+		ABIE53_001643	0.62	+1.1
1,831,696	-		ABIE53_001643	0.62	+0.2
1,831,696	-		ABIE53_001643	0.62	+1.1
1,831,696	-		ABIE53_001643	0.62	+4.7
1,831,696	-		ABIE53_001643	0.62	-0.5
1,831,818	+		ABIE53_001643	0.71	+0.1
1,831,818	+		ABIE53_001643	0.71	+1.1
1,831,818	+		ABIE53_001643	0.71	+1.9
1,831,819	-		ABIE53_001643	0.72	-0.9
1,831,819	-		ABIE53_001643	0.72	+0.8
1,831,951	+		ABIE53_001643	0.82	-2.6
1,831,951	+		ABIE53_001643	0.82	-0.1
1,831,951	+		ABIE53_001643	0.82	+1.6
1,831,951	+		ABIE53_001643	0.82	-1.5
1,831,951	+		ABIE53_001643	0.82	+3.1
1,831,951	+		ABIE53_001643	0.82	-1.5
1,831,951	+		ABIE53_001643	0.82	+3.0
1,831,951	+		ABIE53_001643	0.82	-0.4
1,831,951	+		ABIE53_001643	0.82	+1.1
1,831,951	+		ABIE53_001643	0.82	-2.1
1,831,951	+		ABIE53_001643	0.82	+0.4
1,831,952	-		ABIE53_001643	0.82	-2.5
1,831,952	-		ABIE53_001643	0.82	-1.2
1,831,952	-		ABIE53_001643	0.82	-1.9
1,831,952	-		ABIE53_001643	0.82	+1.1
1,831,952	-		ABIE53_001643	0.82	+0.2
1,831,952	-		ABIE53_001643	0.82	-1.9
1,831,952	-		ABIE53_001643	0.82	-0.0
1,831,952	-		ABIE53_001643	0.82	-1.2
1,831,952	-		ABIE53_001643	0.82	-1.9
1,831,952	-		ABIE53_001643	0.82	+0.0
1,831,952	-		ABIE53_001643	0.82	+1.9
1,831,968	+		ABIE53_001643	0.84	+3.6
1,831,968	+		ABIE53_001643	0.84	+1.1
1,831,969	-		ABIE53_001643	0.84	-1.2
1,831,990	-		ABIE53_001643	0.85	-0.9
1,831,990	-		ABIE53_001643	0.85	+0.1
1,832,004	+		ABIE53_001643	0.86	-1.9
1,832,005	-		ABIE53_001643	0.87	-4.0
1,832,005	-		ABIE53_001643	0.87	-1.7
1,832,005	-		ABIE53_001643	0.87	-2.8
1,832,005	-		ABIE53_001643	0.87	+1.3
1,832,016	+		ABIE53_001643	0.87	-3.5
1,832,016	+		ABIE53_001643	0.87	-0.2
1,832,016	+		ABIE53_001643	0.87	-1.5
1,832,016	+		ABIE53_001643	0.87	-2.2
1,832,016	+		ABIE53_001643	0.87	-0.9
1,832,016	+		ABIE53_001643	0.87	-0.8
1,832,016	+		ABIE53_001643	0.87	+3.4
1,832,016	+		ABIE53_001643	0.87	+1.1
1,832,016	+		ABIE53_001643	0.87	+1.1
1,832,016	+		ABIE53_001643	0.87	+1.1
1,832,016	+		ABIE53_001643	0.87	-2.1
1,832,017	-		ABIE53_001643	0.87	+2.3
1,832,017	-		ABIE53_001643	0.87	-0.3
1,832,017	-		ABIE53_001643	0.87	-0.1
1,832,017	-		ABIE53_001643	0.87	-1.4
1,832,017	-		ABIE53_001643	0.87	-2.2
1,832,017	-		ABIE53_001643	0.87	+0.6
1,832,235	+				-1.2
1,832,235	+				+0.8
1,832,236	-				+0.4
1,832,236	-				-3.2
1,832,249	-				-0.9
1,832,249	-				+2.1
1,832,249	-				+1.1
1,832,249	-				-0.5
1,832,260	+				+1.1
1,832,260	+				-0.9
1,832,260	+				-2.7
1,832,260	+				+0.3
1,832,260	+				+1.1
1,832,260	+				-1.5
1,832,260	+				-3.0
1,832,260	+				+2.9
1,832,260	+				+0.1
1,832,260	+				-1.7
1,832,260	+				-3.2
1,832,261	-				+1.3
1,832,261	-				-1.9
1,832,261	-				+0.1
1,832,283	+				-1.9
1,832,283	+				+0.6
1,832,283	+				-2.2
1,832,284	-				-1.9
1,832,284	-				+1.1
1,832,373	+				-2.4
1,832,374	-				-1.2
1,832,374	-				-1.9
1,832,374	-				-1.7
1,832,428	-		ABIE53_001644	0.12	-2.2
1,832,437	+		ABIE53_001644	0.13	-0.5
1,832,438	-		ABIE53_001644	0.13	-1.5
1,832,628	+		ABIE53_001644	0.29	-3.3
1,832,628	+		ABIE53_001644	0.29	-1.2
1,832,714	-		ABIE53_001644	0.36	-1.9
1,832,725	-		ABIE53_001644	0.37	-2.2
1,832,725	-		ABIE53_001644	0.37	-2.7
1,832,970	+		ABIE53_001644	0.57	-4.4
1,832,970	+		ABIE53_001644	0.57	-1.5
1,832,970	+		ABIE53_001644	0.57	-1.9
1,832,970	+		ABIE53_001644	0.57	-1.7
1,832,970	+		ABIE53_001644	0.57	-0.9
1,832,971	-		ABIE53_001644	0.57	-1.7
1,832,971	-		ABIE53_001644	0.57	-1.2
1,832,971	-		ABIE53_001644	0.57	-1.9
1,832,971	-		ABIE53_001644	0.57	-0.5
1,833,017	-		ABIE53_001644	0.61	-2.6
1,833,017	-		ABIE53_001644	0.61	-2.7
1,833,027	+		ABIE53_001644	0.62	-2.4
1,833,028	-		ABIE53_001644	0.62	-2.5
1,833,028	-		ABIE53_001644	0.62	-2.9
1,833,028	-		ABIE53_001644	0.62	-2.7
1,833,031	-		ABIE53_001644	0.62	-1.5
1,833,031	-		ABIE53_001644	0.62	+1.1
1,833,037	-		ABIE53_001644	0.63	-2.8
1,833,266	-		ABIE53_001644	0.82	-2.7
1,833,369	+				-3.0
1,833,369	+				-0.5
1,833,370	-				-1.2
1,833,499	-				+1.0
1,833,499	-				+1.1
1,833,516	+				+0.1
1,833,517	-				+0.7
1,833,616	-				+1.8
1,833,779	+				+0.5
1,833,785	-				-0.2
1,833,785	-				-0.5
1,833,845	+				+0.1
1,833,845	+				+1.0
1,833,845	+				-1.2
1,833,845	+				+0.6
1,833,846	-				-0.2
1,833,846	-				+0.5
1,833,897	+				-0.9
1,834,028	+		ABIE53_001645	0.10	-3.2
1,834,028	+		ABIE53_001645	0.10	+3.7
1,834,029	-		ABIE53_001645	0.10	+1.8
1,834,029	-		ABIE53_001645	0.10	+0.9
1,834,029	-		ABIE53_001645	0.10	+1.1
1,834,029	-		ABIE53_001645	0.10	-0.5
1,834,029	-		ABIE53_001645	0.10	-0.3
1,834,029	-		ABIE53_001645	0.10	-1.9
1,834,095	+		ABIE53_001645	0.13	-0.9
1,834,095	+		ABIE53_001645	0.13	-2.6
1,834,095	+		ABIE53_001645	0.13	-2.2
1,834,095	+		ABIE53_001645	0.13	+0.1
1,834,096	-		ABIE53_001645	0.14	+1.9
1,834,137	+		ABIE53_001645	0.15	+1.1
1,834,138	-		ABIE53_001645	0.16	+2.6
1,834,138	-		ABIE53_001645	0.16	-0.5
1,834,138	-		ABIE53_001645	0.16	-1.7
1,834,138	-		ABIE53_001645	0.16	-1.2
1,834,150	-		ABIE53_001645	0.16	-2.9
1,834,150	-		ABIE53_001645	0.16	-1.2
1,834,152	+		ABIE53_001645	0.16	-0.8
1,834,152	+		ABIE53_001645	0.16	-0.7
1,834,152	+		ABIE53_001645	0.16	-1.5
1,834,152	+		ABIE53_001645	0.16	+0.1
1,834,152	+		ABIE53_001645	0.16	+1.0
1,834,152	+		ABIE53_001645	0.16	-1.2
1,834,152	+		ABIE53_001645	0.16	+1.4
1,834,152	+		ABIE53_001645	0.16	-1.2
1,834,152	+		ABIE53_001645	0.16	+1.1
1,834,153	-		ABIE53_001645	0.16	-1.9
1,834,153	-		ABIE53_001645	0.16	+0.5
1,834,153	-		ABIE53_001645	0.16	+0.1
1,834,153	-		ABIE53_001645	0.16	+0.7
1,834,153	-		ABIE53_001645	0.16	+0.2
1,834,153	-		ABIE53_001645	0.16	-0.9
1,834,158	+		ABIE53_001645	0.16	+2.1
1,834,158	+		ABIE53_001645	0.16	+0.3
1,834,158	+		ABIE53_001645	0.16	-0.9
1,834,158	+		ABIE53_001645	0.16	-2.2
1,834,158	+		ABIE53_001645	0.16	+0.8
1,834,158	+		ABIE53_001645	0.16	-1.2
1,834,158	+		ABIE53_001645	0.16	+1.1
1,834,159	-		ABIE53_001645	0.17	+2.0
1,834,159	-		ABIE53_001645	0.17	-0.5
1,834,159	-		ABIE53_001645	0.17	-2.9
1,834,161	+		ABIE53_001645	0.17	+2.7
1,834,161	+		ABIE53_001645	0.17	+1.4
1,834,161	+		ABIE53_001645	0.17	+1.4
1,834,161	+		ABIE53_001645	0.17	+1.1
1,834,161	+		ABIE53_001645	0.17	+1.0
1,834,161	+		ABIE53_001645	0.17	-0.5
1,834,161	+		ABIE53_001645	0.17	-1.2
1,834,161	+		ABIE53_001645	0.17	+1.3
1,834,161	+		ABIE53_001645	0.17	-1.2
1,834,161	+		ABIE53_001645	0.17	+1.9
1,834,161	+		ABIE53_001645	0.17	+0.1
1,834,161	+		ABIE53_001645	0.17	+0.4
1,834,162	-		ABIE53_001645	0.17	+1.1
1,834,162	-		ABIE53_001645	0.17	+2.7
1,834,162	-		ABIE53_001645	0.17	-0.9
1,834,176	+		ABIE53_001645	0.17	-1.2
1,834,176	+		ABIE53_001645	0.17	-1.6
1,834,176	+		ABIE53_001645	0.17	-0.3
1,834,176	+		ABIE53_001645	0.17	+4.7
1,834,176	+		ABIE53_001645	0.17	-2.2
1,834,176	+		ABIE53_001645	0.17	+0.4
1,834,176	+		ABIE53_001645	0.17	+4.5
1,834,177	-		ABIE53_001645	0.17	-1.0
1,834,177	-		ABIE53_001645	0.17	-1.1
1,834,177	-		ABIE53_001645	0.17	+0.1
1,834,177	-		ABIE53_001645	0.17	-1.5
1,834,177	-		ABIE53_001645	0.17	-0.2
1,834,177	-		ABIE53_001645	0.17	+1.9
1,834,229	+		ABIE53_001645	0.20	-1.9
1,834,230	-		ABIE53_001645	0.20	-1.1
1,834,311	+		ABIE53_001645	0.24	-0.5
1,834,311	+		ABIE53_001645	0.24	-1.9
1,834,311	+		ABIE53_001645	0.24	+1.8
1,834,311	+		ABIE53_001645	0.24	-1.2
1,834,311	+		ABIE53_001645	0.24	-0.9
1,834,311	+		ABIE53_001645	0.24	-0.1
1,834,311	+		ABIE53_001645	0.24	+1.6
1,834,311	+		ABIE53_001645	0.24	+0.1
1,834,311	+		ABIE53_001645	0.24	+0.5
1,834,311	+		ABIE53_001645	0.24	+0.8
1,834,311	+		ABIE53_001645	0.24	-1.7
1,834,312	-		ABIE53_001645	0.24	+1.9
1,834,312	-		ABIE53_001645	0.24	-1.3
1,834,312	-		ABIE53_001645	0.24	+1.1
1,834,312	-		ABIE53_001645	0.24	-0.4
1,834,312	-		ABIE53_001645	0.24	-0.3
1,834,312	-		ABIE53_001645	0.24	+1.1
1,834,312	-		ABIE53_001645	0.24	+0.1
1,834,312	-		ABIE53_001645	0.24	-1.2
1,834,312	-		ABIE53_001645	0.24	+1.0
1,834,312	-		ABIE53_001645	0.24	-1.9
1,834,312	-		ABIE53_001645	0.24	-1.9
1,834,312	-		ABIE53_001645	0.24	-1.5
1,834,312	-		ABIE53_001645	0.24	-0.9
1,834,323	-		ABIE53_001645	0.24	+0.8
1,834,335	+		ABIE53_001645	0.25	-1.2
1,834,335	+		ABIE53_001645	0.25	-0.2
1,834,336	-		ABIE53_001645	0.25	+4.1
1,834,416	+		ABIE53_001645	0.29	-0.5
1,834,416	+		ABIE53_001645	0.29	-0.1
1,834,416	+		ABIE53_001645	0.29	-1.2
1,834,416	+		ABIE53_001645	0.29	+0.1
1,834,416	+		ABIE53_001645	0.29	-1.2
1,834,416	+		ABIE53_001645	0.29	-0.9
1,834,416	+		ABIE53_001645	0.29	+0.2
1,834,417	-		ABIE53_001645	0.29	+1.1
1,834,417	-		ABIE53_001645	0.29	-0.8
1,834,417	-		ABIE53_001645	0.29	-1.7
1,834,417	-		ABIE53_001645	0.29	-0.9
1,834,417	-		ABIE53_001645	0.29	+0.1