Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_001414

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE53_001413 and ABIE53_001414 are separated by 116 nucleotidesABIE53_001414 and ABIE53_001415 are separated by 53 nucleotidesABIE53_001415 and ABIE53_001416 are separated by 284 nucleotides ABIE53_001413: ABIE53_001413 - SSS family solute:Na+ symporter, at 1,578,257 to 1,579,807 _001413 ABIE53_001414: ABIE53_001414 - putative membrane protein YccC, at 1,579,924 to 1,581,105 _001414 ABIE53_001415: ABIE53_001415 - PhnB protein, at 1,581,159 to 1,581,578 _001415 ABIE53_001416: ABIE53_001416 - transaldolase, at 1,581,863 to 1,582,816 _001416 Position (kb) 1579 1580 1581 1582Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1578.971 kb on + strand, within ABIE53_001413at 1578.971 kb on + strand, within ABIE53_001413at 1578.971 kb on + strand, within ABIE53_001413at 1578.971 kb on + strand, within ABIE53_001413at 1578.972 kb on - strand, within ABIE53_001413at 1578.973 kb on + strand, within ABIE53_001413at 1578.974 kb on - strand, within ABIE53_001413at 1579.023 kb on - strand, within ABIE53_001413at 1579.100 kb on + strand, within ABIE53_001413at 1579.184 kb on + strand, within ABIE53_001413at 1579.184 kb on + strand, within ABIE53_001413at 1579.184 kb on + strand, within ABIE53_001413at 1579.185 kb on - strand, within ABIE53_001413at 1579.185 kb on - strand, within ABIE53_001413at 1579.331 kb on + strand, within ABIE53_001413at 1579.332 kb on - strand, within ABIE53_001413at 1579.332 kb on - strand, within ABIE53_001413at 1579.463 kb on + strand, within ABIE53_001413at 1579.463 kb on + strand, within ABIE53_001413at 1579.463 kb on + strand, within ABIE53_001413at 1579.463 kb on + strand, within ABIE53_001413at 1579.492 kb on + strand, within ABIE53_001413at 1579.535 kb on + strand, within ABIE53_001413at 1579.536 kb on - strand, within ABIE53_001413at 1579.536 kb on - strand, within ABIE53_001413at 1579.553 kb on + strand, within ABIE53_001413at 1579.597 kb on + strand, within ABIE53_001413at 1579.597 kb on + strand, within ABIE53_001413at 1579.598 kb on - strand, within ABIE53_001413at 1579.674 kb on - strandat 1579.784 kb on + strandat 1579.784 kb on + strandat 1579.785 kb on - strandat 1579.785 kb on - strandat 1579.785 kb on - strandat 1579.785 kb on - strandat 1579.806 kb on - strandat 1579.806 kb on - strandat 1579.822 kb on + strandat 1579.822 kb on + strandat 1579.823 kb on - strandat 1579.861 kb on + strandat 1579.862 kb on - strandat 1579.888 kb on - strandat 1579.896 kb on + strandat 1579.896 kb on + strandat 1579.896 kb on + strandat 1579.896 kb on + strandat 1579.896 kb on + strandat 1579.896 kb on + strandat 1579.897 kb on - strandat 1579.897 kb on - strandat 1579.897 kb on - strandat 1580.002 kb on + strandat 1580.003 kb on - strandat 1580.003 kb on - strandat 1580.005 kb on + strandat 1580.006 kb on - strandat 1580.006 kb on - strandat 1580.193 kb on + strand, within ABIE53_001414at 1580.266 kb on + strand, within ABIE53_001414at 1580.266 kb on + strand, within ABIE53_001414at 1580.266 kb on + strand, within ABIE53_001414at 1580.266 kb on + strand, within ABIE53_001414at 1580.266 kb on + strand, within ABIE53_001414at 1580.267 kb on - strand, within ABIE53_001414at 1580.267 kb on - strand, within ABIE53_001414at 1580.267 kb on - strand, within ABIE53_001414at 1580.267 kb on - strand, within ABIE53_001414at 1580.267 kb on - strand, within ABIE53_001414at 1580.267 kb on - strand, within ABIE53_001414at 1580.267 kb on - strand, within ABIE53_001414at 1580.326 kb on + strand, within ABIE53_001414at 1580.326 kb on + strand, within ABIE53_001414at 1580.326 kb on + strand, within ABIE53_001414at 1580.326 kb on + strand, within ABIE53_001414at 1580.326 kb on + strand, within ABIE53_001414at 1580.327 kb on - strand, within ABIE53_001414at 1580.327 kb on - strand, within ABIE53_001414at 1580.327 kb on - strand, within ABIE53_001414at 1580.327 kb on - strand, within ABIE53_001414at 1580.328 kb on + strand, within ABIE53_001414at 1580.328 kb on + strand, within ABIE53_001414at 1580.328 kb on + strand, within ABIE53_001414at 1580.328 kb on + strand, within ABIE53_001414at 1580.328 kb on + strand, within ABIE53_001414at 1580.328 kb on + strand, within ABIE53_001414at 1580.328 kb on + strand, within ABIE53_001414at 1580.328 kb on + strand, within ABIE53_001414at 1580.329 kb on - strand, within ABIE53_001414at 1580.329 kb on - strand, within ABIE53_001414at 1580.329 kb on - strand, within ABIE53_001414at 1580.329 kb on - strand, within ABIE53_001414at 1580.329 kb on - strand, within ABIE53_001414at 1580.329 kb on - strand, within ABIE53_001414at 1580.329 kb on - strand, within ABIE53_001414at 1580.329 kb on - strand, within ABIE53_001414at 1580.476 kb on + strand, within ABIE53_001414at 1580.476 kb on + strand, within ABIE53_001414at 1580.476 kb on + strand, within ABIE53_001414at 1580.477 kb on - strand, within ABIE53_001414at 1580.477 kb on - strand, within ABIE53_001414at 1580.477 kb on - strand, within ABIE53_001414at 1580.527 kb on + strand, within ABIE53_001414at 1580.527 kb on + strand, within ABIE53_001414at 1580.527 kb on + strand, within ABIE53_001414at 1580.527 kb on + strand, within ABIE53_001414at 1580.527 kb on + strand, within ABIE53_001414at 1580.527 kb on + strand, within ABIE53_001414at 1580.527 kb on + strand, within ABIE53_001414at 1580.528 kb on - strand, within ABIE53_001414at 1580.528 kb on - strand, within ABIE53_001414at 1580.528 kb on - strand, within ABIE53_001414at 1580.528 kb on - strand, within ABIE53_001414at 1580.528 kb on - strand, within ABIE53_001414at 1580.528 kb on - strand, within ABIE53_001414at 1580.530 kb on - strand, within ABIE53_001414at 1580.802 kb on + strand, within ABIE53_001414at 1580.803 kb on - strand, within ABIE53_001414at 1580.803 kb on - strand, within ABIE53_001414at 1580.874 kb on + strand, within ABIE53_001414at 1580.874 kb on + strand, within ABIE53_001414at 1580.875 kb on - strand, within ABIE53_001414at 1580.904 kb on + strand, within ABIE53_001414at 1580.905 kb on - strand, within ABIE53_001414at 1580.992 kb on + strandat 1580.993 kb on - strandat 1581.033 kb on - strandat 1581.104 kb on - strandat 1581.104 kb on - strandat 1581.150 kb on + strandat 1581.151 kb on - strandat 1581.289 kb on + strand, within ABIE53_001415at 1581.290 kb on - strand, within ABIE53_001415at 1581.290 kb on - strand, within ABIE53_001415at 1581.290 kb on - strand, within ABIE53_001415at 1581.290 kb on - strand, within ABIE53_001415at 1581.520 kb on + strand, within ABIE53_001415at 1581.521 kb on - strand, within ABIE53_001415at 1581.523 kb on + strand, within ABIE53_001415at 1581.523 kb on + strand, within ABIE53_001415at 1581.523 kb on + strand, within ABIE53_001415at 1581.523 kb on + strand, within ABIE53_001415at 1581.523 kb on + strand, within ABIE53_001415at 1581.524 kb on - strand, within ABIE53_001415at 1581.524 kb on - strand, within ABIE53_001415at 1581.524 kb on - strand, within ABIE53_001415at 1581.558 kb on + strandat 1581.558 kb on + strandat 1581.558 kb on + strandat 1581.558 kb on + strandat 1581.558 kb on + strandat 1581.558 kb on + strandat 1581.559 kb on - strandat 1581.559 kb on - strandat 1581.559 kb on - strandat 1581.559 kb on - strandat 1581.559 kb on - strandat 1581.562 kb on + strandat 1581.562 kb on + strandat 1581.562 kb on + strandat 1581.562 kb on + strandat 1581.562 kb on + strandat 1581.563 kb on - strandat 1581.563 kb on - strandat 1581.563 kb on - strandat 1581.563 kb on - strandat 1581.594 kb on + strandat 1581.595 kb on - strandat 1581.595 kb on - strandat 1581.595 kb on - strandat 1581.595 kb on - strandat 1581.595 kb on - strandat 1581.595 kb on - strandat 1581.595 kb on - strandat 1581.664 kb on + strandat 1581.664 kb on + strandat 1581.664 kb on + strandat 1581.664 kb on + strandat 1581.665 kb on - strandat 1581.865 kb on - strandat 1582.006 kb on + strand, within ABIE53_001416

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
remove
1,578,971 + ABIE53_001413 0.46 +1.2
1,578,971 + ABIE53_001413 0.46 +0.5
1,578,971 + ABIE53_001413 0.46 -0.5
1,578,971 + ABIE53_001413 0.46 +0.1
1,578,972 - ABIE53_001413 0.46 -0.9
1,578,973 + ABIE53_001413 0.46 -2.8
1,578,974 - ABIE53_001413 0.46 +0.5
1,579,023 - ABIE53_001413 0.49 +0.6
1,579,100 + ABIE53_001413 0.54 -0.2
1,579,184 + ABIE53_001413 0.60 -3.1
1,579,184 + ABIE53_001413 0.60 -0.1
1,579,184 + ABIE53_001413 0.60 -0.5
1,579,185 - ABIE53_001413 0.60 +0.8
1,579,185 - ABIE53_001413 0.60 -0.9
1,579,331 + ABIE53_001413 0.69 +1.1
1,579,332 - ABIE53_001413 0.69 +0.1
1,579,332 - ABIE53_001413 0.69 -0.5
1,579,463 + ABIE53_001413 0.78 -0.3
1,579,463 + ABIE53_001413 0.78 +0.9
1,579,463 + ABIE53_001413 0.78 +0.2
1,579,463 + ABIE53_001413 0.78 -0.8
1,579,492 + ABIE53_001413 0.80 -3.3
1,579,535 + ABIE53_001413 0.82 +1.6
1,579,536 - ABIE53_001413 0.82 +0.8
1,579,536 - ABIE53_001413 0.82 -2.9
1,579,553 + ABIE53_001413 0.84 -2.6
1,579,597 + ABIE53_001413 0.86 +0.1
1,579,597 + ABIE53_001413 0.86 +1.9
1,579,598 - ABIE53_001413 0.86 -2.4
1,579,674 - +1.5
1,579,784 + -0.1
1,579,784 + -1.5
1,579,785 - +0.4
1,579,785 - +1.7
1,579,785 - +1.1
1,579,785 - -0.5
1,579,806 - -1.3
1,579,806 - -0.4
1,579,822 + -0.5
1,579,822 + -0.3
1,579,823 - +0.1
1,579,861 + -1.4
1,579,862 - -1.8
1,579,888 - -3.4
1,579,896 + +1.6
1,579,896 + +1.1
1,579,896 + -0.3
1,579,896 + +1.3
1,579,896 + +1.5
1,579,896 + +0.1
1,579,897 - -1.3
1,579,897 - +0.8
1,579,897 - -1.8
1,580,002 + -2.5
1,580,003 - -1.5
1,580,003 - -3.3
1,580,005 + +3.1
1,580,006 - -1.9
1,580,006 - +0.1
1,580,193 + ABIE53_001414 0.23 +0.9
1,580,266 + ABIE53_001414 0.29 -1.5
1,580,266 + ABIE53_001414 0.29 +0.7
1,580,266 + ABIE53_001414 0.29 -3.6
1,580,266 + ABIE53_001414 0.29 +2.5
1,580,266 + ABIE53_001414 0.29 +0.2
1,580,267 - ABIE53_001414 0.29 +0.1
1,580,267 - ABIE53_001414 0.29 -2.1
1,580,267 - ABIE53_001414 0.29 +1.6
1,580,267 - ABIE53_001414 0.29 +0.1
1,580,267 - ABIE53_001414 0.29 -0.7
1,580,267 - ABIE53_001414 0.29 -0.7
1,580,267 - ABIE53_001414 0.29 -0.5
1,580,326 + ABIE53_001414 0.34 +0.5
1,580,326 + ABIE53_001414 0.34 -0.4
1,580,326 + ABIE53_001414 0.34 +0.8
1,580,326 + ABIE53_001414 0.34 -1.8
1,580,326 + ABIE53_001414 0.34 +0.7
1,580,327 - ABIE53_001414 0.34 +2.1
1,580,327 - ABIE53_001414 0.34 +0.2
1,580,327 - ABIE53_001414 0.34 -0.5
1,580,327 - ABIE53_001414 0.34 -1.9
1,580,328 + ABIE53_001414 0.34 +2.1
1,580,328 + ABIE53_001414 0.34 +1.1
1,580,328 + ABIE53_001414 0.34 +1.5
1,580,328 + ABIE53_001414 0.34 -1.2
1,580,328 + ABIE53_001414 0.34 +1.1
1,580,328 + ABIE53_001414 0.34 -0.9
1,580,328 + ABIE53_001414 0.34 -0.1
1,580,328 + ABIE53_001414 0.34 +0.3
1,580,329 - ABIE53_001414 0.34 +0.1
1,580,329 - ABIE53_001414 0.34 +0.2
1,580,329 - ABIE53_001414 0.34 -2.6
1,580,329 - ABIE53_001414 0.34 -3.5
1,580,329 - ABIE53_001414 0.34 +0.3
1,580,329 - ABIE53_001414 0.34 -1.3
1,580,329 - ABIE53_001414 0.34 -2.5
1,580,329 - ABIE53_001414 0.34 -2.4
1,580,476 + ABIE53_001414 0.47 -1.3
1,580,476 + ABIE53_001414 0.47 -1.1
1,580,476 + ABIE53_001414 0.47 +0.1
1,580,477 - ABIE53_001414 0.47 +0.4
1,580,477 - ABIE53_001414 0.47 -0.9
1,580,477 - ABIE53_001414 0.47 +4.4
1,580,527 + ABIE53_001414 0.51 -2.9
1,580,527 + ABIE53_001414 0.51 -0.9
1,580,527 + ABIE53_001414 0.51 -1.3
1,580,527 + ABIE53_001414 0.51 -2.4
1,580,527 + ABIE53_001414 0.51 +0.6
1,580,527 + ABIE53_001414 0.51 -0.9
1,580,527 + ABIE53_001414 0.51 +0.1
1,580,528 - ABIE53_001414 0.51 -0.1
1,580,528 - ABIE53_001414 0.51 -0.1
1,580,528 - ABIE53_001414 0.51 -0.9
1,580,528 - ABIE53_001414 0.51 -0.3
1,580,528 - ABIE53_001414 0.51 -0.7
1,580,528 - ABIE53_001414 0.51 +1.4
1,580,530 - ABIE53_001414 0.51 -2.6
1,580,802 + ABIE53_001414 0.74 -1.8
1,580,803 - ABIE53_001414 0.74 -1.8
1,580,803 - ABIE53_001414 0.74 -0.9
1,580,874 + ABIE53_001414 0.80 -3.3
1,580,874 + ABIE53_001414 0.80 +0.7
1,580,875 - ABIE53_001414 0.80 +1.1
1,580,904 + ABIE53_001414 0.83 -0.5
1,580,905 - ABIE53_001414 0.83 +1.2
1,580,992 + -1.3
1,580,993 - +1.3
1,581,033 - -0.5
1,581,104 - -2.6
1,581,104 - +3.4
1,581,150 + -1.3
1,581,151 - -0.3
1,581,289 + ABIE53_001415 0.31 -2.8
1,581,290 - ABIE53_001415 0.31 +1.2
1,581,290 - ABIE53_001415 0.31 -1.3
1,581,290 - ABIE53_001415 0.31 -2.9
1,581,290 - ABIE53_001415 0.31 +0.4
1,581,520 + ABIE53_001415 0.86 +0.1
1,581,521 - ABIE53_001415 0.86 +3.7
1,581,523 + ABIE53_001415 0.87 -0.9
1,581,523 + ABIE53_001415 0.87 -2.5
1,581,523 + ABIE53_001415 0.87 +1.4
1,581,523 + ABIE53_001415 0.87 -0.5
1,581,523 + ABIE53_001415 0.87 -1.9
1,581,524 - ABIE53_001415 0.87 -0.9
1,581,524 - ABIE53_001415 0.87 -0.8
1,581,524 - ABIE53_001415 0.87 +0.1
1,581,558 + +0.8
1,581,558 + -1.5
1,581,558 + -1.0
1,581,558 + +0.1
1,581,558 + -2.4
1,581,558 + -1.3
1,581,559 - -1.6
1,581,559 - -0.5
1,581,559 - +0.6
1,581,559 - +0.8
1,581,559 - -1.9
1,581,562 + +1.1
1,581,562 + -1.5
1,581,562 + -1.8
1,581,562 + -1.8
1,581,562 + +2.2
1,581,563 - +1.1
1,581,563 - -0.8
1,581,563 - -1.9
1,581,563 - -1.7
1,581,594 + -1.8
1,581,595 - -0.5
1,581,595 - -2.5
1,581,595 - +0.1
1,581,595 - +0.8
1,581,595 - +0.3
1,581,595 - -1.3
1,581,595 - +0.1
1,581,664 + +1.1
1,581,664 + -2.6
1,581,664 + -0.9
1,581,664 + -3.0
1,581,665 - +1.1
1,581,865 - +1.1
1,582,006 + ABIE53_001416 0.15 -4.0

Or see this region's nucleotide sequence