Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_000629

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_000627 and ABIE53_000628 are separated by 17 nucleotidesABIE53_000628 and ABIE53_000629 are separated by 25 nucleotidesABIE53_000629 and ABIE53_000630 are separated by 98 nucleotidesABIE53_000630 and ABIE53_000631 are separated by 71 nucleotides ABIE53_000627: ABIE53_000627 - D-alanine transaminase, at 685,612 to 686,517 _000627 ABIE53_000628: ABIE53_000628 - putative lipoic acid-binding regulatory protein, at 686,535 to 686,804 _000628 ABIE53_000629: ABIE53_000629 - LysR family glycine cleavage system transcriptional activator, at 686,830 to 687,846 _000629 ABIE53_000630: ABIE53_000630 - hypothetical protein, at 687,945 to 688,271 _000630 ABIE53_000631: ABIE53_000631 - lipoyl(octanoyl) transferase, at 688,343 to 689,068 _000631 Position (kb) 686 687 688Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 685.936 kb on + strand, within ABIE53_000627at 685.936 kb on + strand, within ABIE53_000627at 685.936 kb on + strand, within ABIE53_000627at 685.936 kb on + strand, within ABIE53_000627at 685.936 kb on + strand, within ABIE53_000627at 685.936 kb on + strand, within ABIE53_000627at 685.937 kb on - strand, within ABIE53_000627at 685.937 kb on - strand, within ABIE53_000627at 685.937 kb on - strand, within ABIE53_000627at 686.146 kb on + strand, within ABIE53_000627at 686.146 kb on + strand, within ABIE53_000627at 686.146 kb on + strand, within ABIE53_000627at 686.146 kb on + strand, within ABIE53_000627at 686.146 kb on + strand, within ABIE53_000627at 686.147 kb on - strand, within ABIE53_000627at 686.147 kb on - strand, within ABIE53_000627at 686.147 kb on - strand, within ABIE53_000627at 686.147 kb on - strand, within ABIE53_000627at 686.479 kb on + strandat 686.479 kb on + strandat 686.479 kb on + strandat 686.479 kb on + strandat 686.480 kb on - strandat 686.480 kb on - strandat 686.488 kb on + strandat 686.488 kb on + strandat 686.489 kb on - strandat 686.489 kb on - strandat 686.558 kb on + strandat 686.558 kb on + strandat 686.558 kb on + strandat 686.558 kb on + strandat 686.558 kb on + strandat 686.558 kb on + strandat 686.558 kb on + strandat 686.558 kb on + strandat 686.558 kb on + strandat 686.559 kb on - strandat 686.559 kb on - strandat 686.559 kb on - strandat 686.559 kb on - strandat 686.559 kb on - strandat 686.559 kb on - strandat 686.565 kb on + strand, within ABIE53_000628at 686.566 kb on - strand, within ABIE53_000628at 686.566 kb on - strand, within ABIE53_000628at 686.597 kb on + strand, within ABIE53_000628at 686.597 kb on + strand, within ABIE53_000628at 686.597 kb on + strand, within ABIE53_000628at 686.597 kb on + strand, within ABIE53_000628at 686.597 kb on + strand, within ABIE53_000628at 686.598 kb on - strand, within ABIE53_000628at 686.703 kb on + strand, within ABIE53_000628at 686.703 kb on + strand, within ABIE53_000628at 686.703 kb on + strand, within ABIE53_000628at 686.703 kb on + strand, within ABIE53_000628at 686.704 kb on - strand, within ABIE53_000628at 686.704 kb on - strand, within ABIE53_000628at 686.704 kb on - strand, within ABIE53_000628at 686.704 kb on - strand, within ABIE53_000628at 686.704 kb on - strand, within ABIE53_000628at 686.704 kb on - strand, within ABIE53_000628at 686.704 kb on - strand, within ABIE53_000628at 686.704 kb on - strand, within ABIE53_000628at 686.704 kb on - strand, within ABIE53_000628at 686.704 kb on - strand, within ABIE53_000628at 686.760 kb on + strand, within ABIE53_000628at 686.760 kb on + strand, within ABIE53_000628at 686.761 kb on - strand, within ABIE53_000628at 686.802 kb on + strandat 686.802 kb on + strandat 686.802 kb on + strandat 686.802 kb on + strandat 686.802 kb on + strandat 686.802 kb on + strandat 686.803 kb on - strandat 686.803 kb on - strandat 686.803 kb on - strandat 686.832 kb on - strandat 687.044 kb on + strand, within ABIE53_000629at 687.044 kb on + strand, within ABIE53_000629at 687.044 kb on + strand, within ABIE53_000629at 687.044 kb on + strand, within ABIE53_000629at 687.044 kb on + strand, within ABIE53_000629at 687.044 kb on + strand, within ABIE53_000629at 687.044 kb on + strand, within ABIE53_000629at 687.044 kb on + strand, within ABIE53_000629at 687.045 kb on - strand, within ABIE53_000629at 687.045 kb on - strand, within ABIE53_000629at 687.045 kb on - strand, within ABIE53_000629at 687.045 kb on - strand, within ABIE53_000629at 687.045 kb on - strand, within ABIE53_000629at 687.045 kb on - strand, within ABIE53_000629at 687.045 kb on - strand, within ABIE53_000629at 687.047 kb on + strand, within ABIE53_000629at 687.047 kb on + strand, within ABIE53_000629at 687.047 kb on + strand, within ABIE53_000629at 687.047 kb on + strand, within ABIE53_000629at 687.047 kb on + strand, within ABIE53_000629at 687.047 kb on + strand, within ABIE53_000629at 687.047 kb on + strand, within ABIE53_000629at 687.047 kb on + strand, within ABIE53_000629at 687.048 kb on - strand, within ABIE53_000629at 687.048 kb on - strand, within ABIE53_000629at 687.048 kb on - strand, within ABIE53_000629at 687.048 kb on - strand, within ABIE53_000629at 687.048 kb on - strand, within ABIE53_000629at 687.188 kb on + strand, within ABIE53_000629at 687.188 kb on + strand, within ABIE53_000629at 687.188 kb on + strand, within ABIE53_000629at 687.189 kb on - strand, within ABIE53_000629at 687.189 kb on - strand, within ABIE53_000629at 687.189 kb on - strand, within ABIE53_000629at 687.377 kb on + strand, within ABIE53_000629at 687.377 kb on + strand, within ABIE53_000629at 687.378 kb on - strand, within ABIE53_000629at 687.389 kb on + strand, within ABIE53_000629at 687.389 kb on + strand, within ABIE53_000629at 687.389 kb on + strand, within ABIE53_000629at 687.389 kb on + strand, within ABIE53_000629at 687.389 kb on + strand, within ABIE53_000629at 687.389 kb on + strand, within ABIE53_000629at 687.390 kb on - strand, within ABIE53_000629at 687.390 kb on - strand, within ABIE53_000629at 687.390 kb on - strand, within ABIE53_000629at 687.390 kb on - strand, within ABIE53_000629at 687.390 kb on - strand, within ABIE53_000629at 687.390 kb on - strand, within ABIE53_000629at 687.398 kb on + strand, within ABIE53_000629at 687.496 kb on - strand, within ABIE53_000629at 687.863 kb on + strandat 687.863 kb on + strandat 687.864 kb on - strandat 687.889 kb on + strandat 687.900 kb on + strandat 687.906 kb on + strandat 687.914 kb on + strandat 687.955 kb on + strandat 687.956 kb on - strandat 687.962 kb on + strandat 687.962 kb on + strandat 687.963 kb on - strandat 687.983 kb on + strand, within ABIE53_000630at 688.080 kb on + strand, within ABIE53_000630at 688.080 kb on + strand, within ABIE53_000630at 688.080 kb on + strand, within ABIE53_000630at 688.080 kb on + strand, within ABIE53_000630at 688.080 kb on + strand, within ABIE53_000630at 688.080 kb on + strand, within ABIE53_000630at 688.081 kb on - strand, within ABIE53_000630at 688.081 kb on - strand, within ABIE53_000630at 688.081 kb on - strand, within ABIE53_000630at 688.081 kb on - strand, within ABIE53_000630at 688.081 kb on - strand, within ABIE53_000630at 688.081 kb on - strand, within ABIE53_000630at 688.320 kb on + strandat 688.321 kb on - strandat 688.321 kb on - strandat 688.321 kb on - strandat 688.371 kb on + strandat 688.371 kb on + strandat 688.371 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
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685,936 + ABIE53_000627 0.36 -2.6
685,936 + ABIE53_000627 0.36 -1.4
685,936 + ABIE53_000627 0.36 +3.7
685,936 + ABIE53_000627 0.36 -2.8
685,936 + ABIE53_000627 0.36 +2.1
685,936 + ABIE53_000627 0.36 -2.4
685,937 - ABIE53_000627 0.36 -0.5
685,937 - ABIE53_000627 0.36 +0.4
685,937 - ABIE53_000627 0.36 +3.8
686,146 + ABIE53_000627 0.59 -2.1
686,146 + ABIE53_000627 0.59 +0.0
686,146 + ABIE53_000627 0.59 +0.2
686,146 + ABIE53_000627 0.59 +1.6
686,146 + ABIE53_000627 0.59 +1.7
686,147 - ABIE53_000627 0.59 -1.4
686,147 - ABIE53_000627 0.59 +0.6
686,147 - ABIE53_000627 0.59 -1.3
686,147 - ABIE53_000627 0.59 -1.9
686,479 + -2.3
686,479 + -1.5
686,479 + +0.8
686,479 + -0.4
686,480 - +1.0
686,480 - +1.2
686,488 + +3.4
686,488 + +1.1
686,489 - +0.4
686,489 - -1.5
686,558 + +3.1
686,558 + -2.8
686,558 + -1.3
686,558 + +1.1
686,558 + +0.8
686,558 + +1.1
686,558 + -2.4
686,558 + +0.2
686,558 + -0.9
686,559 - -2.5
686,559 - -1.7
686,559 - +0.8
686,559 - -1.3
686,559 - -1.5
686,559 - +0.1
686,565 + ABIE53_000628 0.11 -1.1
686,566 - ABIE53_000628 0.11 +1.1
686,566 - ABIE53_000628 0.11 -0.0
686,597 + ABIE53_000628 0.23 -2.6
686,597 + ABIE53_000628 0.23 +3.6
686,597 + ABIE53_000628 0.23 +1.1
686,597 + ABIE53_000628 0.23 -2.7
686,597 + ABIE53_000628 0.23 -2.3
686,598 - ABIE53_000628 0.23 -2.4
686,703 + ABIE53_000628 0.62 -1.3
686,703 + ABIE53_000628 0.62 +1.3
686,703 + ABIE53_000628 0.62 +0.1
686,703 + ABIE53_000628 0.62 -0.3
686,704 - ABIE53_000628 0.63 +0.3
686,704 - ABIE53_000628 0.63 +0.1
686,704 - ABIE53_000628 0.63 -0.7
686,704 - ABIE53_000628 0.63 -1.3
686,704 - ABIE53_000628 0.63 -0.2
686,704 - ABIE53_000628 0.63 -2.3
686,704 - ABIE53_000628 0.63 -1.7
686,704 - ABIE53_000628 0.63 -0.7
686,704 - ABIE53_000628 0.63 -1.9
686,704 - ABIE53_000628 0.63 +0.1
686,760 + ABIE53_000628 0.83 -0.1
686,760 + ABIE53_000628 0.83 -1.5
686,761 - ABIE53_000628 0.84 -1.7
686,802 + +1.4
686,802 + -0.2
686,802 + -0.1
686,802 + -0.8
686,802 + -0.2
686,802 + -1.4
686,803 - +0.7
686,803 - +0.6
686,803 - -0.3
686,832 - -1.9
687,044 + ABIE53_000629 0.21 -0.5
687,044 + ABIE53_000629 0.21 -0.2
687,044 + ABIE53_000629 0.21 -0.4
687,044 + ABIE53_000629 0.21 +1.6
687,044 + ABIE53_000629 0.21 -0.3
687,044 + ABIE53_000629 0.21 -0.5
687,044 + ABIE53_000629 0.21 +0.3
687,044 + ABIE53_000629 0.21 +2.5
687,045 - ABIE53_000629 0.21 -0.5
687,045 - ABIE53_000629 0.21 +0.3
687,045 - ABIE53_000629 0.21 -1.3
687,045 - ABIE53_000629 0.21 +1.2
687,045 - ABIE53_000629 0.21 -0.9
687,045 - ABIE53_000629 0.21 -1.8
687,045 - ABIE53_000629 0.21 -2.1
687,047 + ABIE53_000629 0.21 +1.1
687,047 + ABIE53_000629 0.21 -2.3
687,047 + ABIE53_000629 0.21 -1.3
687,047 + ABIE53_000629 0.21 -2.6
687,047 + ABIE53_000629 0.21 -1.3
687,047 + ABIE53_000629 0.21 -2.0
687,047 + ABIE53_000629 0.21 -2.1
687,047 + ABIE53_000629 0.21 -1.3
687,048 - ABIE53_000629 0.21 -0.2
687,048 - ABIE53_000629 0.21 -0.4
687,048 - ABIE53_000629 0.21 +1.3
687,048 - ABIE53_000629 0.21 -0.5
687,048 - ABIE53_000629 0.21 +0.2
687,188 + ABIE53_000629 0.35 +1.5
687,188 + ABIE53_000629 0.35 -1.3
687,188 + ABIE53_000629 0.35 -0.4
687,189 - ABIE53_000629 0.35 -2.3
687,189 - ABIE53_000629 0.35 +1.4
687,189 - ABIE53_000629 0.35 -0.5
687,377 + ABIE53_000629 0.54 -2.8
687,377 + ABIE53_000629 0.54 -0.0
687,378 - ABIE53_000629 0.54 -1.3
687,389 + ABIE53_000629 0.55 +0.6
687,389 + ABIE53_000629 0.55 +0.2
687,389 + ABIE53_000629 0.55 +1.1
687,389 + ABIE53_000629 0.55 +1.1
687,389 + ABIE53_000629 0.55 -0.9
687,389 + ABIE53_000629 0.55 -1.3
687,390 - ABIE53_000629 0.55 +1.1
687,390 - ABIE53_000629 0.55 -1.5
687,390 - ABIE53_000629 0.55 +1.9
687,390 - ABIE53_000629 0.55 +1.1
687,390 - ABIE53_000629 0.55 +0.7
687,390 - ABIE53_000629 0.55 +1.1
687,398 + ABIE53_000629 0.56 -0.2
687,496 - ABIE53_000629 0.65 -3.6
687,863 + -1.3
687,863 + -2.1
687,864 - +0.4
687,889 + -3.1
687,900 + -1.3
687,906 + -1.4
687,914 + +1.2
687,955 + -2.4
687,956 - +1.1
687,962 + -0.5
687,962 + -3.5
687,963 - -2.1
687,983 + ABIE53_000630 0.12 -0.2
688,080 + ABIE53_000630 0.41 +0.8
688,080 + ABIE53_000630 0.41 +0.1
688,080 + ABIE53_000630 0.41 -0.7
688,080 + ABIE53_000630 0.41 -0.8
688,080 + ABIE53_000630 0.41 +0.1
688,080 + ABIE53_000630 0.41 +0.7
688,081 - ABIE53_000630 0.42 +1.6
688,081 - ABIE53_000630 0.42 +0.7
688,081 - ABIE53_000630 0.42 -0.6
688,081 - ABIE53_000630 0.42 -1.1
688,081 - ABIE53_000630 0.42 +2.1
688,081 - ABIE53_000630 0.42 +0.8
688,320 + -0.5
688,321 - +0.2
688,321 - +1.8
688,321 - +0.1
688,371 + -0.1
688,371 + -0.0
688,371 + -2.6

Or see this region's nucleotide sequence