Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000326 and ABIE53_000327 are separated by 388 nucleotides ABIE53_000327 and ABIE53_000328 are separated by 64 nucleotides ABIE53_000328 and ABIE53_000329 are separated by 255 nucleotides
ABIE53_000326: ABIE53_000326 - hypothetical protein, at 345,704 to 346,042
_000326
ABIE53_000327: ABIE53_000327 - hypothetical protein, at 346,431 to 346,721
_000327
ABIE53_000328: ABIE53_000328 - histidine triad (HIT) family protein, at 346,786 to 347,211
_000328
ABIE53_000329: ABIE53_000329 - hypothetical protein, at 347,467 to 347,799
_000329
Position (kb) 346
347 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 345.455 kb on + strand at 345.456 kb on - strand at 345.456 kb on - strand at 345.456 kb on - strand at 345.487 kb on + strand at 345.487 kb on + strand at 345.488 kb on - strand at 345.488 kb on - strand at 345.539 kb on - strand at 345.629 kb on - strand at 345.648 kb on - strand at 345.752 kb on - strand, within ABIE53_000326 at 345.752 kb on - strand, within ABIE53_000326 at 345.928 kb on - strand, within ABIE53_000326 at 345.928 kb on - strand, within ABIE53_000326 at 345.928 kb on - strand, within ABIE53_000326 at 345.928 kb on - strand, within ABIE53_000326 at 345.928 kb on - strand, within ABIE53_000326 at 346.042 kb on + strand at 346.042 kb on + strand at 346.042 kb on + strand at 346.042 kb on + strand at 346.042 kb on + strand at 346.042 kb on + strand at 346.042 kb on + strand at 346.042 kb on + strand at 346.042 kb on + strand at 346.042 kb on + strand at 346.042 kb on + strand at 346.042 kb on + strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.075 kb on + strand at 346.075 kb on + strand at 346.075 kb on + strand at 346.075 kb on + strand at 346.075 kb on + strand at 346.075 kb on + strand at 346.075 kb on + strand at 346.075 kb on + strand at 346.076 kb on - strand at 346.076 kb on - strand at 346.076 kb on - strand at 346.076 kb on - strand at 346.079 kb on + strand at 346.079 kb on + strand at 346.079 kb on + strand at 346.079 kb on + strand at 346.079 kb on + strand at 346.079 kb on + strand at 346.079 kb on + strand at 346.079 kb on + strand at 346.079 kb on + strand at 346.079 kb on + strand at 346.079 kb on + strand at 346.079 kb on + strand at 346.080 kb on - strand at 346.080 kb on - strand at 346.080 kb on - strand at 346.080 kb on - strand at 346.080 kb on - strand at 346.080 kb on - strand at 346.080 kb on - strand at 346.080 kb on - strand at 346.080 kb on - strand at 346.080 kb on - strand at 346.080 kb on - strand at 346.080 kb on - strand at 346.080 kb on - strand at 346.080 kb on - strand at 346.080 kb on - strand at 346.080 kb on - strand at 346.080 kb on - strand at 346.087 kb on + strand at 346.087 kb on + strand at 346.087 kb on + strand at 346.088 kb on - strand at 346.101 kb on - strand at 346.119 kb on + strand at 346.119 kb on + strand at 346.119 kb on + strand at 346.119 kb on + strand at 346.120 kb on - strand at 346.120 kb on - strand at 346.120 kb on - strand at 346.202 kb on + strand at 346.202 kb on + strand at 346.202 kb on + strand at 346.203 kb on - strand at 346.203 kb on - strand at 346.209 kb on + strand at 346.210 kb on - strand at 346.236 kb on - strand at 346.245 kb on - strand at 346.245 kb on - strand at 346.249 kb on - strand at 346.249 kb on - strand at 346.249 kb on - strand at 346.257 kb on + strand at 346.257 kb on + strand at 346.257 kb on + strand at 346.257 kb on + strand at 346.257 kb on + strand at 346.257 kb on + strand at 346.258 kb on - strand at 346.258 kb on - strand at 346.258 kb on - strand at 346.258 kb on - strand at 346.258 kb on - strand at 346.258 kb on - strand at 346.259 kb on + strand at 346.259 kb on + strand at 346.259 kb on + strand at 346.259 kb on + strand at 346.259 kb on + strand at 346.260 kb on - strand at 346.260 kb on - strand at 346.260 kb on - strand at 346.260 kb on - strand at 346.334 kb on + strand at 346.335 kb on - strand at 346.338 kb on - strand at 346.375 kb on - strand at 346.426 kb on - strand at 346.465 kb on + strand, within ABIE53_000327 at 346.465 kb on + strand, within ABIE53_000327 at 346.491 kb on + strand, within ABIE53_000327 at 346.492 kb on - strand, within ABIE53_000327 at 346.492 kb on - strand, within ABIE53_000327 at 346.492 kb on - strand, within ABIE53_000327 at 346.492 kb on - strand, within ABIE53_000327 at 346.506 kb on - strand, within ABIE53_000327 at 346.506 kb on - strand, within ABIE53_000327 at 346.558 kb on + strand, within ABIE53_000327 at 346.558 kb on + strand, within ABIE53_000327 at 346.558 kb on + strand, within ABIE53_000327 at 346.559 kb on - strand, within ABIE53_000327 at 346.559 kb on - strand, within ABIE53_000327 at 346.559 kb on - strand, within ABIE53_000327 at 346.717 kb on + strand at 346.717 kb on + strand at 346.718 kb on - strand at 346.718 kb on - strand at 346.719 kb on + strand at 346.719 kb on + strand at 346.719 kb on + strand at 346.720 kb on - strand at 346.720 kb on - strand at 346.720 kb on - strand at 346.720 kb on - strand at 346.720 kb on - strand at 346.720 kb on - strand at 346.720 kb on - strand at 346.761 kb on + strand at 346.762 kb on - strand at 346.762 kb on - strand at 346.762 kb on - strand at 346.960 kb on + strand, within ABIE53_000328 at 346.960 kb on + strand, within ABIE53_000328 at 346.960 kb on + strand, within ABIE53_000328 at 346.960 kb on + strand, within ABIE53_000328 at 346.961 kb on - strand, within ABIE53_000328 at 346.961 kb on - strand, within ABIE53_000328 at 346.961 kb on - strand, within ABIE53_000328 at 346.961 kb on - strand, within ABIE53_000328 at 346.961 kb on - strand, within ABIE53_000328 at 347.161 kb on + strand, within ABIE53_000328 at 347.161 kb on + strand, within ABIE53_000328 at 347.161 kb on + strand, within ABIE53_000328 at 347.161 kb on + strand, within ABIE53_000328 at 347.161 kb on + strand, within ABIE53_000328 at 347.161 kb on + strand, within ABIE53_000328 at 347.161 kb on + strand, within ABIE53_000328 at 347.162 kb on - strand, within ABIE53_000328 at 347.162 kb on - strand, within ABIE53_000328 at 347.162 kb on - strand, within ABIE53_000328 at 347.162 kb on - strand, within ABIE53_000328 at 347.162 kb on - strand, within ABIE53_000328 at 347.162 kb on - strand, within ABIE53_000328 at 347.162 kb on - strand, within ABIE53_000328 at 347.204 kb on + strand at 347.204 kb on + strand at 347.204 kb on + strand at 347.205 kb on - strand at 347.205 kb on - strand at 347.205 kb on - strand at 347.205 kb on - strand at 347.205 kb on - strand at 347.268 kb on + strand at 347.269 kb on - strand at 347.269 kb on - strand at 347.269 kb on - strand at 347.269 kb on - strand at 347.269 kb on - strand at 347.269 kb on - strand at 347.354 kb on + strand at 347.355 kb on - strand at 347.355 kb on - strand at 347.358 kb on + strand at 347.358 kb on + strand at 347.358 kb on + strand at 347.358 kb on + strand at 347.359 kb on - strand at 347.359 kb on - strand at 347.376 kb on + strand at 347.376 kb on + strand at 347.376 kb on + strand at 347.376 kb on + strand at 347.377 kb on - strand at 347.377 kb on - strand at 347.377 kb on - strand at 347.377 kb on - strand at 347.377 kb on - strand at 347.384 kb on + strand at 347.384 kb on + strand at 347.384 kb on + strand at 347.384 kb on + strand at 347.384 kb on + strand at 347.384 kb on + strand at 347.384 kb on + strand at 347.384 kb on + strand at 347.384 kb on + strand at 347.384 kb on + strand at 347.384 kb on + strand at 347.385 kb on - strand at 347.385 kb on - strand at 347.385 kb on - strand at 347.385 kb on - strand at 347.385 kb on - strand at 347.385 kb on - strand at 347.385 kb on - strand at 347.385 kb on - strand at 347.385 kb on - strand at 347.396 kb on - strand at 347.411 kb on + strand at 347.412 kb on - strand at 347.412 kb on - strand at 347.412 kb on - strand at 347.412 kb on - strand at 347.412 kb on - strand at 347.412 kb on - strand at 347.412 kb on - strand at 347.477 kb on + strand at 347.478 kb on - strand at 347.478 kb on - strand at 347.478 kb on - strand at 347.606 kb on + strand, within ABIE53_000329 at 347.632 kb on + strand, within ABIE53_000329 at 347.632 kb on + strand, within ABIE53_000329 at 347.632 kb on + strand, within ABIE53_000329 at 347.632 kb on + strand, within ABIE53_000329 at 347.632 kb on + strand, within ABIE53_000329 at 347.633 kb on - strand, within ABIE53_000329 at 347.633 kb on - strand, within ABIE53_000329 at 347.633 kb on - strand, within ABIE53_000329 at 347.647 kb on + strand, within ABIE53_000329 at 347.648 kb on - strand, within ABIE53_000329 at 347.648 kb on - strand, within ABIE53_000329 at 347.677 kb on + strand, within ABIE53_000329 at 347.677 kb on + strand, within ABIE53_000329 at 347.677 kb on + strand, within ABIE53_000329 at 347.678 kb on - strand, within ABIE53_000329 at 347.678 kb on - strand, within ABIE53_000329 at 347.678 kb on - strand, within ABIE53_000329 at 347.678 kb on - strand, within ABIE53_000329 at 347.695 kb on + strand, within ABIE53_000329 at 347.716 kb on + strand, within ABIE53_000329 at 347.717 kb on - strand, within ABIE53_000329 at 347.717 kb on - strand, within ABIE53_000329 at 347.717 kb on - strand, within ABIE53_000329 at 347.717 kb on - strand, within ABIE53_000329
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 345,455 + -0.9 345,456 - -1.3 345,456 - +0.4 345,456 - -1.9 345,487 + -1.4 345,487 + -0.7 345,488 - +2.1 345,488 - -0.7 345,539 - -1.2 345,629 - +1.5 345,648 - -0.1 345,752 - ABIE53_000326 0.14 +0.9 345,752 - ABIE53_000326 0.14 +0.6 345,928 - ABIE53_000326 0.66 +1.0 345,928 - ABIE53_000326 0.66 -2.3 345,928 - ABIE53_000326 0.66 +0.7 345,928 - ABIE53_000326 0.66 -0.3 345,928 - ABIE53_000326 0.66 -2.2 346,042 + +0.1 346,042 + +1.1 346,042 + -2.3 346,042 + -1.2 346,042 + -3.2 346,042 + -0.8 346,042 + -0.0 346,042 + -2.3 346,042 + +1.5 346,042 + -1.7 346,042 + -1.0 346,042 + +4.8 346,043 - +1.5 346,043 - +1.4 346,043 - -0.9 346,043 - -0.7 346,043 - -0.3 346,043 - +2.5 346,043 - -0.5 346,043 - -0.3 346,043 - +2.3 346,075 + -3.5 346,075 + +0.5 346,075 + +0.2 346,075 + +0.8 346,075 + -0.2 346,075 + +1.1 346,075 + -3.7 346,075 + +0.9 346,076 - +1.2 346,076 - -2.6 346,076 - -0.8 346,076 - -0.5 346,079 + +2.0 346,079 + -1.2 346,079 + -0.3 346,079 + +1.8 346,079 + -0.4 346,079 + -2.4 346,079 + -0.7 346,079 + -0.6 346,079 + -1.4 346,079 + +1.1 346,079 + -0.9 346,079 + +2.0 346,080 - +2.7 346,080 - -0.1 346,080 - -0.3 346,080 - -0.1 346,080 - -2.2 346,080 - -0.9 346,080 - +1.3 346,080 - +1.7 346,080 - +0.7 346,080 - +2.4 346,080 - -4.0 346,080 - +0.2 346,080 - +5.9 346,080 - -2.2 346,080 - -2.7 346,080 - +0.6 346,080 - +0.8 346,087 + -0.2 346,087 + +0.1 346,087 + -0.9 346,088 - +2.5 346,101 - -1.9 346,119 + -0.2 346,119 + -1.7 346,119 + -0.5 346,119 + +0.8 346,120 - -1.7 346,120 - +1.4 346,120 - -1.3 346,202 + -1.1 346,202 + +1.1 346,202 + +1.1 346,203 - -3.0 346,203 - -2.2 346,209 + -0.0 346,210 - -0.9 346,236 - +1.5 346,245 - +0.4 346,245 - +0.1 346,249 - +0.6 346,249 - -2.0 346,249 - +0.1 346,257 + +2.3 346,257 + -0.5 346,257 + -0.2 346,257 + -1.2 346,257 + -2.0 346,257 + -0.5 346,258 - +2.4 346,258 - -0.5 346,258 - -3.7 346,258 - -0.5 346,258 - -1.7 346,258 - -0.9 346,259 + +1.1 346,259 + -1.9 346,259 + +0.5 346,259 + -1.9 346,259 + +0.1 346,260 - +1.7 346,260 - -2.7 346,260 - -0.3 346,260 - -1.0 346,334 + -1.5 346,335 - +1.5 346,338 - -0.0 346,375 - +0.9 346,426 - +1.1 346,465 + ABIE53_000327 0.12 -0.6 346,465 + ABIE53_000327 0.12 -1.0 346,491 + ABIE53_000327 0.21 -0.4 346,492 - ABIE53_000327 0.21 -1.7 346,492 - ABIE53_000327 0.21 -0.8 346,492 - ABIE53_000327 0.21 +0.4 346,492 - ABIE53_000327 0.21 -0.6 346,506 - ABIE53_000327 0.26 -0.5 346,506 - ABIE53_000327 0.26 +3.4 346,558 + ABIE53_000327 0.44 -2.7 346,558 + ABIE53_000327 0.44 -1.2 346,558 + ABIE53_000327 0.44 -1.5 346,559 - ABIE53_000327 0.44 +0.1 346,559 - ABIE53_000327 0.44 -2.0 346,559 - ABIE53_000327 0.44 -2.5 346,717 + -0.7 346,717 + -2.9 346,718 - -0.1 346,718 - -0.6 346,719 + +1.7 346,719 + -4.6 346,719 + +0.1 346,720 - -1.7 346,720 - -0.2 346,720 - -2.5 346,720 - -2.6 346,720 - -2.9 346,720 - -3.0 346,720 - -1.5 346,761 + +1.4 346,762 - -0.9 346,762 - -2.5 346,762 - +1.2 346,960 + ABIE53_000328 0.41 +1.4 346,960 + ABIE53_000328 0.41 -3.0 346,960 + ABIE53_000328 0.41 -3.3 346,960 + ABIE53_000328 0.41 -0.5 346,961 - ABIE53_000328 0.41 -0.3 346,961 - ABIE53_000328 0.41 -1.5 346,961 - ABIE53_000328 0.41 -2.9 346,961 - ABIE53_000328 0.41 +0.1 346,961 - ABIE53_000328 0.41 +2.7 347,161 + ABIE53_000328 0.88 -2.3 347,161 + ABIE53_000328 0.88 +1.1 347,161 + ABIE53_000328 0.88 -1.9 347,161 + ABIE53_000328 0.88 -1.3 347,161 + ABIE53_000328 0.88 -1.4 347,161 + ABIE53_000328 0.88 -2.9 347,161 + ABIE53_000328 0.88 +1.1 347,162 - ABIE53_000328 0.88 -0.7 347,162 - ABIE53_000328 0.88 -0.4 347,162 - ABIE53_000328 0.88 -1.7 347,162 - ABIE53_000328 0.88 +1.1 347,162 - ABIE53_000328 0.88 -0.4 347,162 - ABIE53_000328 0.88 +2.1 347,162 - ABIE53_000328 0.88 +1.1 347,204 + -1.7 347,204 + +0.1 347,204 + -0.3 347,205 - -0.1 347,205 - -2.0 347,205 - +0.0 347,205 - -0.1 347,205 - +0.4 347,268 + -3.4 347,269 - +1.5 347,269 - +3.1 347,269 - +0.7 347,269 - -1.4 347,269 - +1.3 347,269 - +2.2 347,354 + -0.3 347,355 - +0.5 347,355 - -2.5 347,358 + +0.7 347,358 + +1.2 347,358 + -0.4 347,358 + -1.5 347,359 - -3.3 347,359 - +0.2 347,376 + -0.9 347,376 + +1.7 347,376 + +0.1 347,376 + +1.1 347,377 - -1.5 347,377 - +1.3 347,377 - +0.4 347,377 - -0.5 347,377 - -1.5 347,384 + -1.2 347,384 + +1.8 347,384 + -0.5 347,384 + -1.5 347,384 + +0.8 347,384 + -2.5 347,384 + +0.9 347,384 + -0.1 347,384 + -1.5 347,384 + -1.2 347,384 + +1.1 347,385 - -0.5 347,385 - -1.4 347,385 - -1.3 347,385 - +0.8 347,385 - -1.5 347,385 - -1.9 347,385 - +1.1 347,385 - -0.9 347,385 - +0.1 347,396 - +0.1 347,411 + -0.1 347,412 - +2.7 347,412 - +1.1 347,412 - -1.2 347,412 - -3.0 347,412 - -1.1 347,412 - +1.6 347,412 - -1.2 347,477 + +0.4 347,478 - +1.5 347,478 - +1.1 347,478 - +0.0 347,606 + ABIE53_000329 0.42 +0.0 347,632 + ABIE53_000329 0.50 -0.5 347,632 + ABIE53_000329 0.50 +1.1 347,632 + ABIE53_000329 0.50 +0.7 347,632 + ABIE53_000329 0.50 +0.1 347,632 + ABIE53_000329 0.50 -1.2 347,633 - ABIE53_000329 0.50 -0.9 347,633 - ABIE53_000329 0.50 +0.5 347,633 - ABIE53_000329 0.50 -0.5 347,647 + ABIE53_000329 0.54 -0.3 347,648 - ABIE53_000329 0.54 +0.3 347,648 - ABIE53_000329 0.54 -0.4 347,677 + ABIE53_000329 0.63 +0.4 347,677 + ABIE53_000329 0.63 +3.4 347,677 + ABIE53_000329 0.63 +0.5 347,678 - ABIE53_000329 0.63 +0.1 347,678 - ABIE53_000329 0.63 +0.3 347,678 - ABIE53_000329 0.63 +4.4 347,678 - ABIE53_000329 0.63 -0.9 347,695 + ABIE53_000329 0.68 +0.2 347,716 + ABIE53_000329 0.75 -2.5 347,717 - ABIE53_000329 0.75 -0.0 347,717 - ABIE53_000329 0.75 +0.4 347,717 - ABIE53_000329 0.75 -0.6 347,717 - ABIE53_000329 0.75 -1.5
Or see this region's nucleotide sequence