Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_959

Experiment: LB no stress 24 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_959 and Pf6N2E2_960 are separated by 82 nucleotides Pf6N2E2_959 - putative membrane protein, at 1,130,027 to 1,130,761 _959 Pf6N2E2_960 - Type IV secretory pathway, VirD4 components, at 1,130,844 to 1,132,964 _960 Position (kb) 1130 1131Strain fitness (log2 ratio) -2 -1 0 1 2at 1129.082 kb on + strandat 1129.215 kb on + strandat 1129.797 kb on + strandat 1130.031 kb on - strandat 1130.031 kb on - strandat 1130.137 kb on - strand, within Pf6N2E2_959at 1130.337 kb on + strand, within Pf6N2E2_959at 1130.530 kb on - strand, within Pf6N2E2_959at 1130.582 kb on - strand, within Pf6N2E2_959at 1130.582 kb on - strand, within Pf6N2E2_959at 1130.615 kb on + strand, within Pf6N2E2_959at 1130.615 kb on + strand, within Pf6N2E2_959at 1130.811 kb on + strandat 1130.873 kb on + strandat 1130.873 kb on + strandat 1131.275 kb on + strand, within Pf6N2E2_960at 1131.309 kb on + strand, within Pf6N2E2_960at 1131.309 kb on + strand, within Pf6N2E2_960at 1131.343 kb on + strand, within Pf6N2E2_960at 1131.344 kb on - strand, within Pf6N2E2_960at 1131.503 kb on - strand, within Pf6N2E2_960at 1131.503 kb on - strand, within Pf6N2E2_960at 1131.596 kb on - strand, within Pf6N2E2_960at 1131.665 kb on - strand, within Pf6N2E2_960at 1131.678 kb on + strand, within Pf6N2E2_960at 1131.679 kb on - strand, within Pf6N2E2_960at 1131.748 kb on + strand, within Pf6N2E2_960at 1131.748 kb on + strand, within Pf6N2E2_960at 1131.748 kb on + strand, within Pf6N2E2_960at 1131.752 kb on + strand, within Pf6N2E2_960at 1131.752 kb on + strand, within Pf6N2E2_960

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Per-strain Table

Position Strand Gene LocusTag Fraction LB no stress 24 hours
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1,129,082 + -2.0
1,129,215 + -1.3
1,129,797 + -0.6
1,130,031 - -0.6
1,130,031 - +1.3
1,130,137 - Pf6N2E2_959 0.15 +0.7
1,130,337 + Pf6N2E2_959 0.42 -0.2
1,130,530 - Pf6N2E2_959 0.68 -1.6
1,130,582 - Pf6N2E2_959 0.76 -1.6
1,130,582 - Pf6N2E2_959 0.76 -0.8
1,130,615 + Pf6N2E2_959 0.80 -1.2
1,130,615 + Pf6N2E2_959 0.80 -0.7
1,130,811 + +2.0
1,130,873 + +1.2
1,130,873 + -0.0
1,131,275 + Pf6N2E2_960 0.20 -0.5
1,131,309 + Pf6N2E2_960 0.22 +0.6
1,131,309 + Pf6N2E2_960 0.22 +1.3
1,131,343 + Pf6N2E2_960 0.24 -0.5
1,131,344 - Pf6N2E2_960 0.24 -1.7
1,131,503 - Pf6N2E2_960 0.31 -0.8
1,131,503 - Pf6N2E2_960 0.31 +1.9
1,131,596 - Pf6N2E2_960 0.35 +1.2
1,131,665 - Pf6N2E2_960 0.39 -0.8
1,131,678 + Pf6N2E2_960 0.39 -0.1
1,131,679 - Pf6N2E2_960 0.39 -0.0
1,131,748 + Pf6N2E2_960 0.43 -0.9
1,131,748 + Pf6N2E2_960 0.43 +0.4
1,131,748 + Pf6N2E2_960 0.43 +0.8
1,131,752 + Pf6N2E2_960 0.43 -1.1
1,131,752 + Pf6N2E2_960 0.43 -0.8

Or see this region's nucleotide sequence