Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4057

Experiment: LB no stress 24 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4054 and Pf6N2E2_4055 are separated by 150 nucleotidesPf6N2E2_4055 and Pf6N2E2_4056 are separated by 6 nucleotidesPf6N2E2_4056 and Pf6N2E2_4057 are separated by 39 nucleotidesPf6N2E2_4057 and Pf6N2E2_4058 are separated by 130 nucleotides Pf6N2E2_4054 - Osmotically inducible protein C, at 4,733,495 to 4,733,926 _4054 Pf6N2E2_4055 - FIG00955509: hypothetical protein, at 4,734,077 to 4,734,310 _4055 Pf6N2E2_4056 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 4,734,317 to 4,734,742 _4056 Pf6N2E2_4057 - lipoprotein, putative, at 4,734,782 to 4,735,195 _4057 Pf6N2E2_4058 - PUTATIVE ZINC PROTEASE PROTEIN, at 4,735,326 to 4,736,345 _4058 Position (kb) 4734 4735 4736Strain fitness (log2 ratio) -2 -1 0 1 2at 4733.964 kb on - strandat 4733.984 kb on - strandat 4734.012 kb on + strandat 4734.012 kb on + strandat 4734.012 kb on + strandat 4734.013 kb on - strandat 4734.013 kb on - strandat 4734.013 kb on - strandat 4734.191 kb on - strand, within Pf6N2E2_4055at 4734.191 kb on - strand, within Pf6N2E2_4055at 4734.195 kb on + strand, within Pf6N2E2_4055at 4734.195 kb on + strand, within Pf6N2E2_4055at 4734.195 kb on + strand, within Pf6N2E2_4055at 4734.195 kb on + strand, within Pf6N2E2_4055at 4734.196 kb on - strand, within Pf6N2E2_4055at 4734.203 kb on + strand, within Pf6N2E2_4055at 4734.203 kb on + strand, within Pf6N2E2_4055at 4734.204 kb on - strand, within Pf6N2E2_4055at 4734.204 kb on - strand, within Pf6N2E2_4055at 4734.204 kb on - strand, within Pf6N2E2_4055at 4734.204 kb on - strand, within Pf6N2E2_4055at 4734.290 kb on + strandat 4734.290 kb on + strandat 4734.290 kb on + strandat 4734.290 kb on + strandat 4734.291 kb on - strandat 4734.291 kb on - strandat 4734.291 kb on - strandat 4734.308 kb on + strandat 4734.372 kb on + strand, within Pf6N2E2_4056at 4734.372 kb on + strand, within Pf6N2E2_4056at 4734.372 kb on + strand, within Pf6N2E2_4056at 4734.372 kb on + strand, within Pf6N2E2_4056at 4734.373 kb on - strand, within Pf6N2E2_4056at 4734.447 kb on + strand, within Pf6N2E2_4056at 4734.462 kb on + strand, within Pf6N2E2_4056at 4734.462 kb on + strand, within Pf6N2E2_4056at 4734.462 kb on + strand, within Pf6N2E2_4056at 4734.462 kb on + strand, within Pf6N2E2_4056at 4734.462 kb on + strand, within Pf6N2E2_4056at 4734.462 kb on + strand, within Pf6N2E2_4056at 4734.463 kb on - strand, within Pf6N2E2_4056at 4734.463 kb on - strand, within Pf6N2E2_4056at 4734.463 kb on - strand, within Pf6N2E2_4056at 4734.463 kb on - strand, within Pf6N2E2_4056at 4734.463 kb on - strand, within Pf6N2E2_4056at 4734.463 kb on - strand, within Pf6N2E2_4056at 4734.463 kb on - strand, within Pf6N2E2_4056at 4734.463 kb on - strand, within Pf6N2E2_4056at 4734.463 kb on - strand, within Pf6N2E2_4056at 4734.512 kb on - strand, within Pf6N2E2_4056at 4734.722 kb on + strandat 4734.734 kb on + strandat 4734.734 kb on + strandat 4734.734 kb on + strandat 4734.809 kb on - strandat 4734.840 kb on + strand, within Pf6N2E2_4057at 4735.219 kb on + strandat 4735.219 kb on + strandat 4735.219 kb on + strandat 4735.220 kb on - strandat 4735.220 kb on - strandat 4735.220 kb on - strandat 4735.220 kb on - strandat 4735.220 kb on - strandat 4735.220 kb on - strandat 4735.220 kb on - strandat 4735.359 kb on + strandat 4735.359 kb on + strandat 4735.359 kb on + strandat 4735.359 kb on + strandat 4735.360 kb on - strandat 4735.360 kb on - strandat 4735.360 kb on - strandat 4735.360 kb on - strandat 4735.520 kb on + strand, within Pf6N2E2_4058at 4735.521 kb on - strand, within Pf6N2E2_4058at 4735.521 kb on - strand, within Pf6N2E2_4058at 4735.536 kb on + strand, within Pf6N2E2_4058at 4735.537 kb on - strand, within Pf6N2E2_4058at 4735.537 kb on - strand, within Pf6N2E2_4058at 4735.537 kb on - strand, within Pf6N2E2_4058at 4735.561 kb on + strand, within Pf6N2E2_4058at 4735.562 kb on - strand, within Pf6N2E2_4058at 4735.562 kb on - strand, within Pf6N2E2_4058at 4735.650 kb on + strand, within Pf6N2E2_4058at 4735.651 kb on - strand, within Pf6N2E2_4058at 4735.653 kb on + strand, within Pf6N2E2_4058at 4735.653 kb on + strand, within Pf6N2E2_4058at 4735.654 kb on - strand, within Pf6N2E2_4058at 4735.654 kb on - strand, within Pf6N2E2_4058at 4735.654 kb on - strand, within Pf6N2E2_4058at 4735.842 kb on + strand, within Pf6N2E2_4058at 4735.842 kb on + strand, within Pf6N2E2_4058at 4735.842 kb on + strand, within Pf6N2E2_4058at 4735.843 kb on - strand, within Pf6N2E2_4058at 4736.016 kb on + strand, within Pf6N2E2_4058at 4736.016 kb on + strand, within Pf6N2E2_4058at 4736.016 kb on + strand, within Pf6N2E2_4058at 4736.017 kb on - strand, within Pf6N2E2_4058at 4736.088 kb on + strand, within Pf6N2E2_4058at 4736.088 kb on + strand, within Pf6N2E2_4058at 4736.089 kb on - strand, within Pf6N2E2_4058at 4736.089 kb on - strand, within Pf6N2E2_4058at 4736.131 kb on - strand, within Pf6N2E2_4058at 4736.145 kb on + strand, within Pf6N2E2_4058at 4736.145 kb on + strand, within Pf6N2E2_4058at 4736.145 kb on + strand, within Pf6N2E2_4058at 4736.146 kb on - strand, within Pf6N2E2_4058at 4736.146 kb on - strand, within Pf6N2E2_4058at 4736.146 kb on - strand, within Pf6N2E2_4058at 4736.187 kb on + strand, within Pf6N2E2_4058at 4736.187 kb on + strand, within Pf6N2E2_4058at 4736.187 kb on + strand, within Pf6N2E2_4058at 4736.188 kb on - strand, within Pf6N2E2_4058at 4736.188 kb on - strand, within Pf6N2E2_4058at 4736.188 kb on - strand, within Pf6N2E2_4058at 4736.188 kb on - strand, within Pf6N2E2_4058at 4736.188 kb on - strand, within Pf6N2E2_4058

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Per-strain Table

Position Strand Gene LocusTag Fraction LB no stress 24 hours
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4,733,964 - +0.1
4,733,984 - -0.7
4,734,012 + +0.9
4,734,012 + +0.5
4,734,012 + +1.3
4,734,013 - +0.2
4,734,013 - -0.9
4,734,013 - -1.5
4,734,191 - Pf6N2E2_4055 0.49 +1.2
4,734,191 - Pf6N2E2_4055 0.49 +0.5
4,734,195 + Pf6N2E2_4055 0.50 +1.0
4,734,195 + Pf6N2E2_4055 0.50 +0.5
4,734,195 + Pf6N2E2_4055 0.50 +0.5
4,734,195 + Pf6N2E2_4055 0.50 +0.8
4,734,196 - Pf6N2E2_4055 0.51 +0.3
4,734,203 + Pf6N2E2_4055 0.54 -0.1
4,734,203 + Pf6N2E2_4055 0.54 -0.4
4,734,204 - Pf6N2E2_4055 0.54 +0.6
4,734,204 - Pf6N2E2_4055 0.54 +0.7
4,734,204 - Pf6N2E2_4055 0.54 -0.3
4,734,204 - Pf6N2E2_4055 0.54 -0.1
4,734,290 + +1.2
4,734,290 + -0.4
4,734,290 + -0.8
4,734,290 + -1.9
4,734,291 - +0.1
4,734,291 - +0.8
4,734,291 - -0.8
4,734,308 + +0.6
4,734,372 + Pf6N2E2_4056 0.13 +0.4
4,734,372 + Pf6N2E2_4056 0.13 -0.7
4,734,372 + Pf6N2E2_4056 0.13 +1.7
4,734,372 + Pf6N2E2_4056 0.13 -0.4
4,734,373 - Pf6N2E2_4056 0.13 -0.1
4,734,447 + Pf6N2E2_4056 0.31 -0.4
4,734,462 + Pf6N2E2_4056 0.34 -0.6
4,734,462 + Pf6N2E2_4056 0.34 +0.1
4,734,462 + Pf6N2E2_4056 0.34 -0.3
4,734,462 + Pf6N2E2_4056 0.34 -0.4
4,734,462 + Pf6N2E2_4056 0.34 +1.0
4,734,462 + Pf6N2E2_4056 0.34 +0.4
4,734,463 - Pf6N2E2_4056 0.34 +0.7
4,734,463 - Pf6N2E2_4056 0.34 -0.9
4,734,463 - Pf6N2E2_4056 0.34 +1.5
4,734,463 - Pf6N2E2_4056 0.34 -0.1
4,734,463 - Pf6N2E2_4056 0.34 +1.8
4,734,463 - Pf6N2E2_4056 0.34 +0.6
4,734,463 - Pf6N2E2_4056 0.34 -0.4
4,734,463 - Pf6N2E2_4056 0.34 +0.6
4,734,463 - Pf6N2E2_4056 0.34 -1.9
4,734,512 - Pf6N2E2_4056 0.46 +1.2
4,734,722 + +0.0
4,734,734 + -0.2
4,734,734 + +0.1
4,734,734 + -0.0
4,734,809 - +0.1
4,734,840 + Pf6N2E2_4057 0.14 -0.0
4,735,219 + -0.0
4,735,219 + -0.1
4,735,219 + -0.0
4,735,220 - -1.2
4,735,220 - +0.4
4,735,220 - -0.3
4,735,220 - -1.7
4,735,220 - +0.8
4,735,220 - +0.1
4,735,220 - +1.8
4,735,359 + +0.4
4,735,359 + -1.2
4,735,359 + -0.2
4,735,359 + -0.2
4,735,360 - +0.3
4,735,360 - +0.7
4,735,360 - +1.0
4,735,360 - -0.5
4,735,520 + Pf6N2E2_4058 0.19 +0.4
4,735,521 - Pf6N2E2_4058 0.19 +0.5
4,735,521 - Pf6N2E2_4058 0.19 +0.8
4,735,536 + Pf6N2E2_4058 0.21 -0.2
4,735,537 - Pf6N2E2_4058 0.21 +1.0
4,735,537 - Pf6N2E2_4058 0.21 -0.6
4,735,537 - Pf6N2E2_4058 0.21 +0.2
4,735,561 + Pf6N2E2_4058 0.23 +0.6
4,735,562 - Pf6N2E2_4058 0.23 +0.3
4,735,562 - Pf6N2E2_4058 0.23 +0.0
4,735,650 + Pf6N2E2_4058 0.32 -0.8
4,735,651 - Pf6N2E2_4058 0.32 -0.2
4,735,653 + Pf6N2E2_4058 0.32 +1.0
4,735,653 + Pf6N2E2_4058 0.32 -0.1
4,735,654 - Pf6N2E2_4058 0.32 -0.6
4,735,654 - Pf6N2E2_4058 0.32 -0.3
4,735,654 - Pf6N2E2_4058 0.32 +0.3
4,735,842 + Pf6N2E2_4058 0.51 +0.5
4,735,842 + Pf6N2E2_4058 0.51 +0.8
4,735,842 + Pf6N2E2_4058 0.51 -0.2
4,735,843 - Pf6N2E2_4058 0.51 +0.4
4,736,016 + Pf6N2E2_4058 0.68 -1.0
4,736,016 + Pf6N2E2_4058 0.68 +0.5
4,736,016 + Pf6N2E2_4058 0.68 +1.1
4,736,017 - Pf6N2E2_4058 0.68 +0.7
4,736,088 + Pf6N2E2_4058 0.75 -0.9
4,736,088 + Pf6N2E2_4058 0.75 +1.1
4,736,089 - Pf6N2E2_4058 0.75 -0.9
4,736,089 - Pf6N2E2_4058 0.75 -0.5
4,736,131 - Pf6N2E2_4058 0.79 +0.1
4,736,145 + Pf6N2E2_4058 0.80 +0.8
4,736,145 + Pf6N2E2_4058 0.80 +0.5
4,736,145 + Pf6N2E2_4058 0.80 -0.5
4,736,146 - Pf6N2E2_4058 0.80 +1.1
4,736,146 - Pf6N2E2_4058 0.80 -0.2
4,736,146 - Pf6N2E2_4058 0.80 +0.5
4,736,187 + Pf6N2E2_4058 0.84 -1.7
4,736,187 + Pf6N2E2_4058 0.84 +1.5
4,736,187 + Pf6N2E2_4058 0.84 -0.1
4,736,188 - Pf6N2E2_4058 0.85 +0.4
4,736,188 - Pf6N2E2_4058 0.85 +0.3
4,736,188 - Pf6N2E2_4058 0.85 +0.2
4,736,188 - Pf6N2E2_4058 0.85 -0.9
4,736,188 - Pf6N2E2_4058 0.85 -0.5

Or see this region's nucleotide sequence