Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2371

Experiment: LB no stress 24 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2370 and Pf6N2E2_2371 overlap by 4 nucleotidesPf6N2E2_2371 and Pf6N2E2_2372 overlap by 4 nucleotides Pf6N2E2_2370 - Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV), at 2,803,616 to 2,805,673 _2370 Pf6N2E2_2371 - Type III secretion outermembrane contact sensing protein (YopN,Yop4b,LcrE), at 2,805,670 to 2,806,773 _2371 Pf6N2E2_2372 - Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG), at 2,806,770 to 2,808,425 _2372 Position (kb) 2805 2806 2807Strain fitness (log2 ratio) -1 0 1at 2804.729 kb on + strand, within Pf6N2E2_2370at 2804.730 kb on - strand, within Pf6N2E2_2370at 2804.980 kb on - strand, within Pf6N2E2_2370at 2805.059 kb on - strand, within Pf6N2E2_2370at 2805.059 kb on - strand, within Pf6N2E2_2370at 2805.120 kb on + strand, within Pf6N2E2_2370at 2805.121 kb on - strand, within Pf6N2E2_2370at 2805.499 kb on - strandat 2805.499 kb on - strandat 2805.717 kb on - strandat 2805.908 kb on + strand, within Pf6N2E2_2371at 2806.119 kb on + strand, within Pf6N2E2_2371at 2806.120 kb on - strand, within Pf6N2E2_2371at 2806.792 kb on + strandat 2806.792 kb on + strandat 2806.830 kb on + strandat 2806.830 kb on + strandat 2806.830 kb on + strandat 2806.831 kb on - strandat 2806.831 kb on - strandat 2807.061 kb on - strand, within Pf6N2E2_2372at 2807.190 kb on + strand, within Pf6N2E2_2372at 2807.190 kb on + strand, within Pf6N2E2_2372at 2807.191 kb on - strand, within Pf6N2E2_2372at 2807.191 kb on - strand, within Pf6N2E2_2372at 2807.209 kb on + strand, within Pf6N2E2_2372at 2807.209 kb on + strand, within Pf6N2E2_2372at 2807.210 kb on - strand, within Pf6N2E2_2372at 2807.257 kb on + strand, within Pf6N2E2_2372at 2807.258 kb on - strand, within Pf6N2E2_2372at 2807.258 kb on - strand, within Pf6N2E2_2372at 2807.258 kb on - strand, within Pf6N2E2_2372at 2807.258 kb on - strand, within Pf6N2E2_2372at 2807.258 kb on - strand, within Pf6N2E2_2372at 2807.258 kb on - strand, within Pf6N2E2_2372at 2807.258 kb on - strand, within Pf6N2E2_2372at 2807.258 kb on - strand, within Pf6N2E2_2372

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Per-strain Table

Position Strand Gene LocusTag Fraction LB no stress 24 hours
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2,804,729 + Pf6N2E2_2370 0.54 +0.6
2,804,730 - Pf6N2E2_2370 0.54 -0.6
2,804,980 - Pf6N2E2_2370 0.66 +0.5
2,805,059 - Pf6N2E2_2370 0.70 +1.2
2,805,059 - Pf6N2E2_2370 0.70 +0.5
2,805,120 + Pf6N2E2_2370 0.73 +0.1
2,805,121 - Pf6N2E2_2370 0.73 -0.1
2,805,499 - +0.2
2,805,499 - +0.2
2,805,717 - -0.5
2,805,908 + Pf6N2E2_2371 0.22 -0.5
2,806,119 + Pf6N2E2_2371 0.41 -0.4
2,806,120 - Pf6N2E2_2371 0.41 -0.9
2,806,792 + -0.9
2,806,792 + +0.3
2,806,830 + +0.6
2,806,830 + +1.0
2,806,830 + +0.1
2,806,831 - +0.1
2,806,831 - +0.3
2,807,061 - Pf6N2E2_2372 0.18 +1.5
2,807,190 + Pf6N2E2_2372 0.25 +0.8
2,807,190 + Pf6N2E2_2372 0.25 -0.6
2,807,191 - Pf6N2E2_2372 0.25 +0.4
2,807,191 - Pf6N2E2_2372 0.25 -0.5
2,807,209 + Pf6N2E2_2372 0.27 +0.1
2,807,209 + Pf6N2E2_2372 0.27 -1.5
2,807,210 - Pf6N2E2_2372 0.27 +0.4
2,807,257 + Pf6N2E2_2372 0.29 +0.7
2,807,258 - Pf6N2E2_2372 0.29 +0.6
2,807,258 - Pf6N2E2_2372 0.29 +0.3
2,807,258 - Pf6N2E2_2372 0.29 -0.2
2,807,258 - Pf6N2E2_2372 0.29 +0.8
2,807,258 - Pf6N2E2_2372 0.29 +0.3
2,807,258 - Pf6N2E2_2372 0.29 -0.4
2,807,258 - Pf6N2E2_2372 0.29 -0.9
2,807,258 - Pf6N2E2_2372 0.29 +0.1

Or see this region's nucleotide sequence