Experiment: LB no stress 24 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_113 and Pf6N2E2_114 are separated by 104 nucleotides Pf6N2E2_114 and Pf6N2E2_115 overlap by 4 nucleotides
Pf6N2E2_113 - FIG00963512: hypothetical protein, at 158,312 to 160,225
_113
Pf6N2E2_114 - Polysaccharide biosynthesis protein, at 160,330 to 161,634
_114
Pf6N2E2_115 - FIG00958408: hypothetical protein, at 161,631 to 162,635
_115
Position (kb) 160
161
162 Strain fitness (log2 ratio) -1
0
1
2 at 159.441 kb on + strand, within Pf6N2E2_113 at 159.441 kb on + strand, within Pf6N2E2_113 at 159.441 kb on + strand, within Pf6N2E2_113 at 159.444 kb on + strand, within Pf6N2E2_113 at 159.444 kb on + strand, within Pf6N2E2_113 at 159.444 kb on + strand, within Pf6N2E2_113 at 159.444 kb on + strand, within Pf6N2E2_113 at 159.445 kb on - strand, within Pf6N2E2_113 at 159.445 kb on - strand, within Pf6N2E2_113 at 159.445 kb on - strand, within Pf6N2E2_113 at 159.507 kb on + strand, within Pf6N2E2_113 at 159.521 kb on - strand, within Pf6N2E2_113 at 159.735 kb on + strand, within Pf6N2E2_113 at 159.864 kb on + strand, within Pf6N2E2_113 at 159.864 kb on + strand, within Pf6N2E2_113 at 159.865 kb on - strand, within Pf6N2E2_113 at 159.865 kb on - strand, within Pf6N2E2_113 at 159.865 kb on - strand, within Pf6N2E2_113 at 159.865 kb on - strand, within Pf6N2E2_113 at 159.955 kb on - strand, within Pf6N2E2_113 at 160.093 kb on - strand at 160.150 kb on - strand at 160.173 kb on + strand at 160.173 kb on + strand at 160.173 kb on + strand at 160.297 kb on + strand at 160.387 kb on - strand at 160.427 kb on + strand at 160.428 kb on - strand at 160.460 kb on + strand at 160.461 kb on - strand, within Pf6N2E2_114 at 160.461 kb on - strand, within Pf6N2E2_114 at 161.390 kb on - strand, within Pf6N2E2_114 at 161.618 kb on + strand at 161.741 kb on - strand, within Pf6N2E2_115 at 161.828 kb on - strand, within Pf6N2E2_115 at 161.833 kb on + strand, within Pf6N2E2_115 at 161.833 kb on + strand, within Pf6N2E2_115 at 161.833 kb on + strand, within Pf6N2E2_115 at 161.833 kb on + strand, within Pf6N2E2_115 at 161.834 kb on - strand, within Pf6N2E2_115 at 161.834 kb on - strand, within Pf6N2E2_115 at 161.834 kb on - strand, within Pf6N2E2_115 at 161.834 kb on - strand, within Pf6N2E2_115 at 161.834 kb on - strand, within Pf6N2E2_115 at 161.834 kb on - strand, within Pf6N2E2_115 at 161.834 kb on - strand, within Pf6N2E2_115 at 161.834 kb on - strand, within Pf6N2E2_115 at 161.834 kb on - strand, within Pf6N2E2_115 at 162.085 kb on + strand, within Pf6N2E2_115 at 162.086 kb on - strand, within Pf6N2E2_115 at 162.086 kb on - strand at 162.278 kb on + strand, within Pf6N2E2_115
Per-strain Table
Position Strand Gene LocusTag Fraction LB no stress 24 hours remove 159,441 + Pf6N2E2_113 0.59 -0.6 159,441 + Pf6N2E2_113 0.59 -0.2 159,441 + Pf6N2E2_113 0.59 -0.9 159,444 + Pf6N2E2_113 0.59 -0.2 159,444 + Pf6N2E2_113 0.59 -1.3 159,444 + Pf6N2E2_113 0.59 -0.2 159,444 + Pf6N2E2_113 0.59 +0.0 159,445 - Pf6N2E2_113 0.59 +0.2 159,445 - Pf6N2E2_113 0.59 +0.0 159,445 - Pf6N2E2_113 0.59 -1.2 159,507 + Pf6N2E2_113 0.62 -0.2 159,521 - Pf6N2E2_113 0.63 +0.2 159,735 + Pf6N2E2_113 0.74 +0.9 159,864 + Pf6N2E2_113 0.81 -0.0 159,864 + Pf6N2E2_113 0.81 -0.1 159,865 - Pf6N2E2_113 0.81 -0.8 159,865 - Pf6N2E2_113 0.81 -0.3 159,865 - Pf6N2E2_113 0.81 +0.7 159,865 - Pf6N2E2_113 0.81 -0.8 159,955 - Pf6N2E2_113 0.86 +0.6 160,093 - -0.2 160,150 - +0.5 160,173 + +1.8 160,173 + -1.3 160,173 + +0.3 160,297 + +0.3 160,387 - -0.2 160,427 + +1.4 160,428 - +1.0 160,460 + -0.2 160,461 - Pf6N2E2_114 0.10 -0.1 160,461 - Pf6N2E2_114 0.10 -1.2 161,390 - Pf6N2E2_114 0.81 -1.0 161,618 + +0.3 161,741 - Pf6N2E2_115 0.11 -0.7 161,828 - Pf6N2E2_115 0.20 +0.5 161,833 + Pf6N2E2_115 0.20 -1.1 161,833 + Pf6N2E2_115 0.20 -0.2 161,833 + Pf6N2E2_115 0.20 +1.2 161,833 + Pf6N2E2_115 0.20 +1.8 161,834 - Pf6N2E2_115 0.20 +1.0 161,834 - Pf6N2E2_115 0.20 +0.7 161,834 - Pf6N2E2_115 0.20 +1.0 161,834 - Pf6N2E2_115 0.20 -0.0 161,834 - Pf6N2E2_115 0.20 -1.3 161,834 - Pf6N2E2_115 0.20 +0.9 161,834 - Pf6N2E2_115 0.20 +0.6 161,834 - Pf6N2E2_115 0.20 -0.3 161,834 - Pf6N2E2_115 0.20 +0.1 162,085 + Pf6N2E2_115 0.45 -0.3 162,086 - Pf6N2E2_115 0.45 -0.2 162,086 - +2.4 162,278 + Pf6N2E2_115 0.64 +1.2
Or see this region's nucleotide sequence