Strain Fitness in Pantoea sp. MT58 around IAI47_21115

Experiment: Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_21110 and IAI47_21115 are separated by 363 nucleotidesIAI47_21115 and IAI47_21120 are separated by 48 nucleotides IAI47_21110: IAI47_21110 - HAMP domain-containing protein, at 470,080 to 471,740 _21110 IAI47_21115: IAI47_21115 - arsenate reductase (glutaredoxin), at 472,104 to 472,505 _21115 IAI47_21120: IAI47_21120 - arsenic transporter, at 472,554 to 473,837 _21120 Position (kb) 472 473Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 471.152 kb on + strand, within IAI47_21110at 471.191 kb on + strand, within IAI47_21110at 471.192 kb on - strand, within IAI47_21110at 471.214 kb on + strand, within IAI47_21110at 471.214 kb on + strand, within IAI47_21110at 471.215 kb on - strand, within IAI47_21110at 471.324 kb on - strand, within IAI47_21110at 471.335 kb on + strand, within IAI47_21110at 471.336 kb on - strand, within IAI47_21110at 471.336 kb on - strand, within IAI47_21110at 471.386 kb on + strand, within IAI47_21110at 471.420 kb on - strand, within IAI47_21110at 471.420 kb on - strand, within IAI47_21110at 471.511 kb on + strand, within IAI47_21110at 471.511 kb on + strand, within IAI47_21110at 471.511 kb on + strand, within IAI47_21110at 471.511 kb on + strand, within IAI47_21110at 471.512 kb on - strand, within IAI47_21110at 471.512 kb on - strand, within IAI47_21110at 471.587 kb on + strandat 471.602 kb on + strandat 471.602 kb on + strandat 471.603 kb on - strandat 471.603 kb on - strandat 471.603 kb on - strandat 471.655 kb on + strandat 471.656 kb on - strandat 471.656 kb on - strandat 471.754 kb on + strandat 471.754 kb on + strandat 471.755 kb on - strandat 471.764 kb on + strandat 471.765 kb on - strandat 471.767 kb on + strandat 471.771 kb on - strandat 471.846 kb on - strandat 471.861 kb on + strandat 471.861 kb on + strandat 471.861 kb on + strandat 471.861 kb on + strandat 471.862 kb on - strandat 471.862 kb on - strandat 471.896 kb on - strandat 471.902 kb on - strandat 471.902 kb on - strandat 471.902 kb on - strandat 471.933 kb on + strandat 471.934 kb on - strandat 471.946 kb on + strandat 471.947 kb on - strandat 471.957 kb on + strandat 471.958 kb on - strandat 472.010 kb on + strandat 472.010 kb on + strandat 472.086 kb on - strandat 472.113 kb on - strandat 472.134 kb on - strandat 472.230 kb on - strand, within IAI47_21115at 472.309 kb on + strand, within IAI47_21115at 472.309 kb on + strand, within IAI47_21115at 472.309 kb on + strand, within IAI47_21115at 472.310 kb on - strand, within IAI47_21115at 472.332 kb on + strand, within IAI47_21115at 472.347 kb on + strand, within IAI47_21115at 472.355 kb on + strand, within IAI47_21115at 472.417 kb on - strand, within IAI47_21115at 472.457 kb on + strand, within IAI47_21115at 472.486 kb on + strandat 472.487 kb on - strandat 472.487 kb on - strandat 472.490 kb on + strandat 472.490 kb on + strandat 472.490 kb on + strandat 472.490 kb on + strandat 472.490 kb on + strandat 472.490 kb on + strandat 472.490 kb on + strandat 472.491 kb on - strandat 472.491 kb on - strandat 472.491 kb on - strandat 472.491 kb on - strandat 472.491 kb on - strandat 472.491 kb on - strandat 472.494 kb on + strandat 472.494 kb on + strandat 472.494 kb on + strandat 472.495 kb on - strandat 472.495 kb on - strandat 472.495 kb on - strandat 472.495 kb on - strandat 472.549 kb on + strandat 472.550 kb on - strandat 472.555 kb on + strandat 472.616 kb on + strandat 472.616 kb on + strandat 472.616 kb on + strandat 472.617 kb on - strandat 472.633 kb on + strandat 472.634 kb on - strandat 472.634 kb on - strandat 472.634 kb on - strandat 472.636 kb on + strandat 472.636 kb on + strandat 472.750 kb on + strand, within IAI47_21120at 472.750 kb on + strand, within IAI47_21120at 472.750 kb on + strand, within IAI47_21120at 472.750 kb on + strand, within IAI47_21120at 472.750 kb on + strandat 472.750 kb on + strand, within IAI47_21120at 472.750 kb on + strand, within IAI47_21120at 472.750 kb on + strand, within IAI47_21120at 472.751 kb on - strand, within IAI47_21120at 472.751 kb on - strand, within IAI47_21120at 472.751 kb on - strand, within IAI47_21120at 472.752 kb on + strand, within IAI47_21120at 472.752 kb on + strand, within IAI47_21120at 472.752 kb on + strand, within IAI47_21120at 472.753 kb on - strand, within IAI47_21120at 472.753 kb on - strand, within IAI47_21120at 472.753 kb on - strand, within IAI47_21120at 472.753 kb on - strand, within IAI47_21120at 472.753 kb on - strand, within IAI47_21120at 472.753 kb on - strand, within IAI47_21120at 472.923 kb on + strand, within IAI47_21120at 472.927 kb on + strand, within IAI47_21120at 472.927 kb on + strand, within IAI47_21120at 472.928 kb on - strand, within IAI47_21120at 472.957 kb on + strand, within IAI47_21120at 472.958 kb on - strand, within IAI47_21120at 472.969 kb on + strand, within IAI47_21120at 472.969 kb on + strand, within IAI47_21120at 472.969 kb on + strand, within IAI47_21120at 472.969 kb on + strand, within IAI47_21120at 472.969 kb on + strand, within IAI47_21120at 472.969 kb on + strand, within IAI47_21120at 472.970 kb on - strand, within IAI47_21120at 472.970 kb on - strand, within IAI47_21120at 472.970 kb on - strand, within IAI47_21120at 472.992 kb on + strand, within IAI47_21120at 472.992 kb on + strand, within IAI47_21120at 472.992 kb on + strand, within IAI47_21120at 472.993 kb on - strand, within IAI47_21120at 472.993 kb on - strand, within IAI47_21120at 472.993 kb on - strand, within IAI47_21120at 473.033 kb on + strand, within IAI47_21120at 473.034 kb on - strand, within IAI47_21120at 473.034 kb on - strand, within IAI47_21120at 473.066 kb on + strand, within IAI47_21120at 473.066 kb on + strand, within IAI47_21120at 473.066 kb on + strand, within IAI47_21120at 473.066 kb on + strand, within IAI47_21120at 473.067 kb on - strand, within IAI47_21120at 473.067 kb on - strand, within IAI47_21120at 473.067 kb on - strand, within IAI47_21120at 473.165 kb on + strand, within IAI47_21120at 473.166 kb on - strand, within IAI47_21120at 473.166 kb on - strand, within IAI47_21120at 473.186 kb on + strand, within IAI47_21120at 473.221 kb on + strand, within IAI47_21120at 473.221 kb on + strand, within IAI47_21120at 473.221 kb on + strand, within IAI47_21120at 473.222 kb on - strand, within IAI47_21120at 473.222 kb on - strand, within IAI47_21120at 473.222 kb on - strand, within IAI47_21120at 473.288 kb on + strand, within IAI47_21120at 473.314 kb on + strand, within IAI47_21120at 473.314 kb on + strand, within IAI47_21120at 473.315 kb on - strand, within IAI47_21120at 473.315 kb on - strand, within IAI47_21120at 473.315 kb on - strand, within IAI47_21120at 473.321 kb on + strand, within IAI47_21120at 473.321 kb on + strand, within IAI47_21120at 473.322 kb on - strand, within IAI47_21120at 473.322 kb on - strand, within IAI47_21120at 473.322 kb on - strand, within IAI47_21120at 473.322 kb on - strand, within IAI47_21120at 473.334 kb on - strand, within IAI47_21120at 473.375 kb on + strand, within IAI47_21120at 473.376 kb on - strand, within IAI47_21120at 473.416 kb on - strand, within IAI47_21120at 473.465 kb on + strand, within IAI47_21120at 473.465 kb on + strand, within IAI47_21120at 473.465 kb on + strand, within IAI47_21120at 473.465 kb on + strand, within IAI47_21120at 473.466 kb on - strand, within IAI47_21120at 473.489 kb on + strand, within IAI47_21120at 473.489 kb on + strand, within IAI47_21120at 473.489 kb on + strand, within IAI47_21120at 473.490 kb on - strand, within IAI47_21120at 473.490 kb on - strand, within IAI47_21120

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
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471,152 + IAI47_21110 0.65 -1.7
471,191 + IAI47_21110 0.67 -1.7
471,192 - IAI47_21110 0.67 -1.2
471,214 + IAI47_21110 0.68 +0.4
471,214 + IAI47_21110 0.68 -0.2
471,215 - IAI47_21110 0.68 +0.4
471,324 - IAI47_21110 0.75 -1.7
471,335 + IAI47_21110 0.76 +0.2
471,336 - IAI47_21110 0.76 +1.9
471,336 - IAI47_21110 0.76 -0.4
471,386 + IAI47_21110 0.79 -0.8
471,420 - IAI47_21110 0.81 +1.4
471,420 - IAI47_21110 0.81 +1.1
471,511 + IAI47_21110 0.86 +2.4
471,511 + IAI47_21110 0.86 +1.2
471,511 + IAI47_21110 0.86 -2.3
471,511 + IAI47_21110 0.86 +1.4
471,512 - IAI47_21110 0.86 +2.4
471,512 - IAI47_21110 0.86 +1.1
471,587 + +0.7
471,602 + +0.2
471,602 + -0.2
471,603 - +0.7
471,603 - -0.0
471,603 - -1.9
471,655 + +1.5
471,656 - -0.4
471,656 - +0.4
471,754 + +0.3
471,754 + +2.0
471,755 - +0.7
471,764 + -0.2
471,765 - -0.3
471,767 + -1.9
471,771 - -0.0
471,846 - +0.2
471,861 + +0.7
471,861 + -1.6
471,861 + +1.6
471,861 + -0.2
471,862 - +0.4
471,862 - -1.1
471,896 - -0.1
471,902 - -0.7
471,902 - +0.8
471,902 - +0.1
471,933 + -0.4
471,934 - +1.9
471,946 + +0.4
471,947 - +1.6
471,957 + -0.0
471,958 - -2.4
472,010 + -0.6
472,010 + -0.9
472,086 - -0.4
472,113 - +2.2
472,134 - -3.1
472,230 - IAI47_21115 0.31 -2.5
472,309 + IAI47_21115 0.51 -3.6
472,309 + IAI47_21115 0.51 -0.6
472,309 + IAI47_21115 0.51 +1.6
472,310 - IAI47_21115 0.51 -1.6
472,332 + IAI47_21115 0.57 +1.4
472,347 + IAI47_21115 0.60 -2.9
472,355 + IAI47_21115 0.62 -0.5
472,417 - IAI47_21115 0.78 +1.4
472,457 + IAI47_21115 0.88 -0.8
472,486 + -1.1
472,487 - +2.1
472,487 - +0.4
472,490 + -2.1
472,490 + +0.4
472,490 + +2.6
472,490 + +0.1
472,490 + +0.7
472,490 + +0.5
472,490 + +0.1
472,491 - -0.6
472,491 - -0.7
472,491 - -1.9
472,491 - -0.6
472,491 - -0.8
472,491 - -1.9
472,494 + -0.1
472,494 + +2.2
472,494 + -1.6
472,495 - +0.1
472,495 - -0.7
472,495 - -0.2
472,495 - -0.4
472,549 + +0.4
472,550 - -2.0
472,555 + -0.4
472,616 + -0.2
472,616 + -1.8
472,616 + -1.2
472,617 - +2.7
472,633 + +0.0
472,634 - -0.8
472,634 - +1.1
472,634 - +1.5
472,636 + +1.4
472,636 + -0.4
472,750 + IAI47_21120 0.15 -1.2
472,750 + IAI47_21120 0.15 +0.3
472,750 + IAI47_21120 0.15 -1.1
472,750 + IAI47_21120 0.15 +1.4
472,750 + +1.4
472,750 + IAI47_21120 0.15 +1.2
472,750 + IAI47_21120 0.15 +0.6
472,750 + IAI47_21120 0.15 -0.6
472,751 - IAI47_21120 0.15 +0.7
472,751 - IAI47_21120 0.15 +2.1
472,751 - IAI47_21120 0.15 +0.4
472,752 + IAI47_21120 0.15 +0.0
472,752 + IAI47_21120 0.15 +1.0
472,752 + IAI47_21120 0.15 +1.1
472,753 - IAI47_21120 0.15 +0.8
472,753 - IAI47_21120 0.15 -0.0
472,753 - IAI47_21120 0.15 -0.4
472,753 - IAI47_21120 0.15 -0.0
472,753 - IAI47_21120 0.15 +0.1
472,753 - IAI47_21120 0.15 -0.4
472,923 + IAI47_21120 0.29 -2.0
472,927 + IAI47_21120 0.29 -0.6
472,927 + IAI47_21120 0.29 -1.9
472,928 - IAI47_21120 0.29 -0.2
472,957 + IAI47_21120 0.31 -0.2
472,958 - IAI47_21120 0.31 +0.8
472,969 + IAI47_21120 0.32 +0.8
472,969 + IAI47_21120 0.32 -0.5
472,969 + IAI47_21120 0.32 -1.8
472,969 + IAI47_21120 0.32 -0.2
472,969 + IAI47_21120 0.32 -0.2
472,969 + IAI47_21120 0.32 +0.8
472,970 - IAI47_21120 0.32 +1.4
472,970 - IAI47_21120 0.32 -1.7
472,970 - IAI47_21120 0.32 -0.6
472,992 + IAI47_21120 0.34 -1.3
472,992 + IAI47_21120 0.34 +2.5
472,992 + IAI47_21120 0.34 -1.4
472,993 - IAI47_21120 0.34 -1.3
472,993 - IAI47_21120 0.34 -1.2
472,993 - IAI47_21120 0.34 -0.6
473,033 + IAI47_21120 0.37 -0.6
473,034 - IAI47_21120 0.37 -2.4
473,034 - IAI47_21120 0.37 +0.1
473,066 + IAI47_21120 0.40 +0.4
473,066 + IAI47_21120 0.40 -0.8
473,066 + IAI47_21120 0.40 +1.7
473,066 + IAI47_21120 0.40 +0.4
473,067 - IAI47_21120 0.40 +1.6
473,067 - IAI47_21120 0.40 +1.6
473,067 - IAI47_21120 0.40 -1.0
473,165 + IAI47_21120 0.48 +1.5
473,166 - IAI47_21120 0.48 -0.0
473,166 - IAI47_21120 0.48 +0.5
473,186 + IAI47_21120 0.49 -0.3
473,221 + IAI47_21120 0.52 +1.0
473,221 + IAI47_21120 0.52 +1.9
473,221 + IAI47_21120 0.52 +2.0
473,222 - IAI47_21120 0.52 -1.2
473,222 - IAI47_21120 0.52 +0.6
473,222 - IAI47_21120 0.52 -0.6
473,288 + IAI47_21120 0.57 +3.2
473,314 + IAI47_21120 0.59 +2.4
473,314 + IAI47_21120 0.59 -1.2
473,315 - IAI47_21120 0.59 +1.7
473,315 - IAI47_21120 0.59 +0.1
473,315 - IAI47_21120 0.59 -0.6
473,321 + IAI47_21120 0.60 +1.4
473,321 + IAI47_21120 0.60 -1.9
473,322 - IAI47_21120 0.60 -0.6
473,322 - IAI47_21120 0.60 +1.9
473,322 - IAI47_21120 0.60 +0.6
473,322 - IAI47_21120 0.60 -2.5
473,334 - IAI47_21120 0.61 -1.3
473,375 + IAI47_21120 0.64 +1.4
473,376 - IAI47_21120 0.64 -1.4
473,416 - IAI47_21120 0.67 -0.2
473,465 + IAI47_21120 0.71 +3.2
473,465 + IAI47_21120 0.71 -0.9
473,465 + IAI47_21120 0.71 +0.6
473,465 + IAI47_21120 0.71 -0.0
473,466 - IAI47_21120 0.71 +0.1
473,489 + IAI47_21120 0.73 +1.5
473,489 + IAI47_21120 0.73 -1.0
473,489 + IAI47_21120 0.73 +1.0
473,490 - IAI47_21120 0.73 -0.6
473,490 - IAI47_21120 0.73 +0.4

Or see this region's nucleotide sequence