Strain Fitness in Pantoea sp. MT58 around IAI47_17455

Experiment: Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,698,446	+		IAI47_17445	0.88	-0.9
3,698,446	+		IAI47_17445	0.88	-3.3
3,698,446	+		IAI47_17445	0.88	+0.8
3,698,446	+		IAI47_17445	0.88	+1.8
3,698,447	-		IAI47_17445	0.88	+0.4
3,698,447	-		IAI47_17445	0.88	-1.7
3,698,447	-		IAI47_17445	0.88	+1.8
3,698,447	-		IAI47_17445	0.88	-0.2
3,698,447	-		IAI47_17445	0.88	+0.8
3,698,447	-		IAI47_17445	0.88	+1.3
3,698,573	-				-0.2
3,698,573	-				-0.2
3,698,583	+				-0.8
3,698,583	+				-0.1
3,698,583	+				-0.1
3,698,715	+				+0.3
3,698,715	+				+0.4
3,698,715	+				+0.6
3,698,715	+				-0.0
3,698,716	-				+0.5
3,698,716	-				+0.7
3,698,716	-				+2.3
3,698,716	-				-0.3
3,698,755	+				+0.4
3,698,812	-				-0.7
3,698,930	-				+0.8
3,698,983	+		IAI47_17450	0.11	+1.8
3,698,983	+		IAI47_17450	0.11	-1.2
3,698,983	+		IAI47_17450	0.11	+1.3
3,698,983	+		IAI47_17450	0.11	-2.1
3,698,984	-		IAI47_17450	0.11	+1.5
3,698,984	-		IAI47_17450	0.11	-0.0
3,699,043	+		IAI47_17450	0.23	+0.8
3,699,043	+		IAI47_17450	0.23	-1.3
3,699,044	-		IAI47_17450	0.24	+1.3
3,699,044	-		IAI47_17450	0.24	+1.3
3,699,044	-		IAI47_17450	0.24	-0.6
3,699,064	+		IAI47_17450	0.28	+0.8
3,699,064	+		IAI47_17450	0.28	-2.4
3,699,064	+		IAI47_17450	0.28	+1.6
3,699,064	+		IAI47_17450	0.28	+0.9
3,699,064	+		IAI47_17450	0.28	-0.9
3,699,064	+		IAI47_17450	0.28	+0.5
3,699,064	+		IAI47_17450	0.28	-0.0
3,699,065	-		IAI47_17450	0.28	-2.1
3,699,065	-		IAI47_17450	0.28	+1.4
3,699,118	+		IAI47_17450	0.39	+2.2
3,699,118	+		IAI47_17450	0.39	-0.7
3,699,119	-				+1.8
3,699,119	-		IAI47_17450	0.39	+0.3
3,699,119	-		IAI47_17450	0.39	+0.3
3,699,119	-		IAI47_17450	0.39	-0.2
3,699,151	+		IAI47_17450	0.45	+0.2
3,699,151	+		IAI47_17450	0.45	+1.6
3,699,202	+		IAI47_17450	0.56	+0.4
3,699,202	+		IAI47_17450	0.56	+2.4
3,699,202	+		IAI47_17450	0.56	-1.2
3,699,202	+		IAI47_17450	0.56	+1.0
3,699,202	+		IAI47_17450	0.56	+1.8
3,699,202	+		IAI47_17450	0.56	+0.2
3,699,203	-		IAI47_17450	0.56	-0.1
3,699,203	-		IAI47_17450	0.56	+1.8
3,699,203	-		IAI47_17450	0.56	-1.9
3,699,203	-		IAI47_17450	0.56	+1.2
3,699,208	+		IAI47_17450	0.57	+1.8
3,699,209	-		IAI47_17450	0.57	-1.4
3,699,236	+		IAI47_17450	0.63	-0.6
3,699,237	-		IAI47_17450	0.63	-1.6
3,699,301	+		IAI47_17450	0.76	+0.3
3,699,301	+		IAI47_17450	0.76	+0.6
3,699,301	+		IAI47_17450	0.76	+0.1
3,699,301	+		IAI47_17450	0.76	-1.2
3,699,301	+		IAI47_17450	0.76	-1.1
3,699,301	+		IAI47_17450	0.76	-0.7
3,699,302	-		IAI47_17450	0.76	-1.2
3,699,302	-		IAI47_17450	0.76	-1.6
3,699,302	-		IAI47_17450	0.76	-1.9
3,699,302	-		IAI47_17450	0.76	-1.2
3,699,302	-		IAI47_17450	0.76	-1.2
3,699,302	-		IAI47_17450	0.76	-0.6
3,699,302	-		IAI47_17450	0.76	-0.3
3,699,302	-		IAI47_17450	0.76	-2.2
3,699,302	-		IAI47_17450	0.76	-0.2
3,699,308	+		IAI47_17450	0.77	-1.1
3,699,308	+		IAI47_17450	0.77	-0.3
3,699,308	+		IAI47_17450	0.77	+1.6
3,699,309	-		IAI47_17450	0.77	+1.3
3,699,309	-		IAI47_17450	0.77	-0.3
3,699,368	+		IAI47_17450	0.89	+1.1
3,699,368	+		IAI47_17450	0.89	+1.8
3,699,369	-		IAI47_17450	0.90	+2.7
3,699,369	-		IAI47_17450	0.90	-2.2
3,699,369	-		IAI47_17450	0.90	-2.0
3,699,403	+				+1.2
3,699,403	+				+0.5
3,699,403	+				+2.8
3,699,404	-				+0.5
3,699,425	+				+1.3
3,699,425	+				+0.4
3,699,425	+				+1.5
3,699,425	+				-0.3
3,699,425	+				-0.7
3,699,425	+				-1.7
3,699,426	-				-0.2
3,699,426	-				+0.7
3,699,426	-				+0.7
3,699,426	-				+0.7
3,699,426	-				-2.7
3,699,445	+				-0.3
3,699,445	+				-0.6
3,699,445	+				+0.0
3,699,445	+				+1.1
3,699,445	+				-0.7
3,699,445	+				-0.6
3,699,445	+				+0.5
3,699,445	+				+0.6
3,699,445	+				-0.0
3,699,445	+				+0.3
3,699,446	-				-0.4
3,699,446	-				-2.2
3,699,446	-				-0.2
3,699,446	-				-0.2
3,699,446	-				+0.3
3,699,446	-				-1.0
3,699,485	-				-0.6
3,699,587	+				+1.1
3,699,709	-		IAI47_17455	0.17	+4.6
3,699,709	-		IAI47_17455	0.17	+0.9
3,699,748	-		IAI47_17455	0.19	+0.8
3,699,825	+		IAI47_17455	0.23	+1.2
3,699,825	+		IAI47_17455	0.23	+1.7
3,699,825	+		IAI47_17455	0.23	+1.3
3,699,825	+		IAI47_17455	0.23	+0.3
3,699,825	+		IAI47_17455	0.23	+1.1
3,699,825	+		IAI47_17455	0.23	-0.3
3,699,826	-		IAI47_17455	0.23	-1.4
3,699,826	-		IAI47_17455	0.23	-0.3
3,699,899	+		IAI47_17455	0.28	+1.8
3,699,899	+		IAI47_17455	0.28	-0.1
3,699,900	-		IAI47_17455	0.28	-0.6
3,699,900	-		IAI47_17455	0.28	+1.2
3,699,900	-		IAI47_17455	0.28	-1.2
3,699,947	+		IAI47_17455	0.31	-1.2
3,699,948	-		IAI47_17455	0.31	-0.9
3,700,065	+		IAI47_17455	0.37	+2.3
3,700,066	-		IAI47_17455	0.37	-0.3
3,700,073	+		IAI47_17455	0.38	-0.7
3,700,073	+		IAI47_17455	0.38	+0.6
3,700,074	-		IAI47_17455	0.38	-0.3
3,700,074	-		IAI47_17455	0.38	-1.4
3,700,074	-		IAI47_17455	0.38	+1.5
3,700,131	+		IAI47_17455	0.41	+1.7
3,700,132	-		IAI47_17455	0.41	-0.6
3,700,132	-		IAI47_17455	0.41	+2.1
3,700,132	-		IAI47_17455	0.41	+1.1
3,700,164	+		IAI47_17455	0.43	-0.5
3,700,164	+		IAI47_17455	0.43	+2.3
3,700,260	+		IAI47_17455	0.49	+0.4
3,700,260	+		IAI47_17455	0.49	+1.9
3,700,260	+		IAI47_17455	0.49	+2.5
3,700,378	+		IAI47_17455	0.56	+0.3
3,700,378	+		IAI47_17455	0.56	+0.3
3,700,426	-		IAI47_17455	0.58	+1.1
3,700,426	-		IAI47_17455	0.58	+0.6
3,700,576	+		IAI47_17455	0.67	-0.5
3,700,663	-		IAI47_17455	0.72	+1.1
3,700,746	+		IAI47_17455	0.77	-1.3
3,700,746	+		IAI47_17455	0.77	-0.3
3,700,746	+		IAI47_17455	0.77	-3.0
3,700,746	+		IAI47_17455	0.77	+0.3
3,700,746	+		IAI47_17455	0.77	+1.8
3,700,747	-		IAI47_17455	0.77	+0.1
3,700,792	+		IAI47_17455	0.80	-0.9
3,700,792	+		IAI47_17455	0.80	+1.9
3,700,793	-		IAI47_17455	0.80	-0.6
3,701,025	+				-2.6
3,701,182	+				-0.9
3,701,182	+				+1.1
3,701,183	-				+2.3
3,701,218	-		IAI47_17460	0.12	-0.2
3,701,218	-		IAI47_17460	0.12	+0.4
3,701,218	-		IAI47_17460	0.12	-2.3
3,701,218	-		IAI47_17460	0.12	+0.0
3,701,231	+		IAI47_17460	0.14	-0.5
3,701,231	+		IAI47_17460	0.14	+0.5
3,701,232	-		IAI47_17460	0.14	-0.5
3,701,536	+		IAI47_17460	0.58	+0.0
3,701,537	-		IAI47_17460	0.59	-0.7
3,701,537	-		IAI47_17460	0.59	+0.6
3,701,615	+		IAI47_17460	0.70	+0.3
3,701,615	+		IAI47_17460	0.70	+2.1
3,701,615	+		IAI47_17460	0.70	-0.5
3,701,615	+		IAI47_17460	0.70	+0.6
3,701,615	+		IAI47_17460	0.70	-1.3
3,701,616	-		IAI47_17460	0.70	-2.9
3,701,690	-		IAI47_17460	0.81	-2.0
3,701,744	+		IAI47_17460	0.89	+0.7
3,701,745	-		IAI47_17460	0.89	-0.9
3,701,762	+				-0.5
3,701,762	+				-0.0
3,701,762	+				-0.4
3,701,763	-				+0.2
3,701,783	+				+0.1
3,701,784	-				-0.8
3,701,810	+				+1.8
3,701,811	-				-0.7
3,701,816	+				+0.7
3,701,816	+				-1.5
3,701,816	+				+0.7
3,701,816	+				+1.1
3,701,817	-				+0.0
3,701,817	-				-0.1
3,701,817	-				-1.2
3,701,817	-				+0.6
3,701,817	-				+1.2
3,701,817	-				-0.2
3,701,877	+				-3.8
3,701,878	-				-0.1
3,701,878	-				+2.2
3,701,944	-				-1.5
3,702,003	-		IAI47_17465	0.14	-1.5
3,702,028	+		IAI47_17465	0.16	-0.1
3,702,028	+		IAI47_17465	0.16	+0.3
3,702,029	-		IAI47_17465	0.16	+1.3
3,702,029	-		IAI47_17465	0.16	-0.3
3,702,120	+		IAI47_17465	0.22	+1.8
3,702,120	+		IAI47_17465	0.22	+2.4
3,702,120	+		IAI47_17465	0.22	-0.2
3,702,120	+		IAI47_17465	0.22	+0.5
3,702,120	+		IAI47_17465	0.22	-1.5
3,702,120	+		IAI47_17465	0.22	-0.3
3,702,121	-		IAI47_17465	0.23	+0.5
3,702,121	-		IAI47_17465	0.23	-0.0
3,702,121	-		IAI47_17465	0.23	+2.7
3,702,121	-		IAI47_17465	0.23	-1.7
3,702,121	-		IAI47_17465	0.23	+0.5
3,702,121	-		IAI47_17465	0.23	+0.0
3,702,121	-		IAI47_17465	0.23	-2.0
3,702,121	-		IAI47_17465	0.23	+2.2
3,702,121	-		IAI47_17465	0.23	-0.5
3,702,121	-		IAI47_17465	0.23	+0.3
3,702,123	+		IAI47_17465	0.23	+3.4
3,702,123	+		IAI47_17465	0.23	-0.5
3,702,124	-		IAI47_17465	0.23	+0.1
3,702,124	-		IAI47_17465	0.23	+0.7
3,702,124	-		IAI47_17465	0.23	+1.3
3,702,124	-		IAI47_17465	0.23	+0.3
3,702,124	-		IAI47_17465	0.23	-0.5
3,702,124	-		IAI47_17465	0.23	-0.5