Strain Fitness in Pantoea sp. MT58 around IAI47_04645

Experiment: Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_04640 and IAI47_04645 are separated by 15 nucleotidesIAI47_04645 and IAI47_04650 overlap by 8 nucleotides IAI47_04640: IAI47_04640 - ABC transporter permease, at 976,811 to 977,860 _04640 IAI47_04645: IAI47_04645 - ABC transporter permease, at 977,876 to 978,865 _04645 IAI47_04650: IAI47_04650 - sugar ABC transporter ATP-binding protein, at 978,858 to 980,363 _04650 Position (kb) 977 978 979Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 976.897 kb on + strandat 976.898 kb on - strandat 976.907 kb on - strandat 976.928 kb on + strand, within IAI47_04640at 976.929 kb on - strand, within IAI47_04640at 976.929 kb on - strand, within IAI47_04640at 976.929 kb on - strand, within IAI47_04640at 976.994 kb on + strand, within IAI47_04640at 976.994 kb on + strand, within IAI47_04640at 976.994 kb on + strand, within IAI47_04640at 976.994 kb on + strand, within IAI47_04640at 976.995 kb on - strand, within IAI47_04640at 977.081 kb on + strand, within IAI47_04640at 977.081 kb on + strand, within IAI47_04640at 977.081 kb on + strand, within IAI47_04640at 977.082 kb on - strand, within IAI47_04640at 977.082 kb on - strand, within IAI47_04640at 977.082 kb on - strand, within IAI47_04640at 977.091 kb on - strand, within IAI47_04640at 977.097 kb on + strand, within IAI47_04640at 977.097 kb on + strand, within IAI47_04640at 977.097 kb on + strand, within IAI47_04640at 977.097 kb on + strand, within IAI47_04640at 977.097 kb on + strand, within IAI47_04640at 977.097 kb on + strand, within IAI47_04640at 977.097 kb on + strand, within IAI47_04640at 977.097 kb on + strand, within IAI47_04640at 977.097 kb on + strand, within IAI47_04640at 977.098 kb on - strand, within IAI47_04640at 977.098 kb on - strand, within IAI47_04640at 977.098 kb on - strand, within IAI47_04640at 977.098 kb on - strand, within IAI47_04640at 977.098 kb on - strand, within IAI47_04640at 977.098 kb on - strand, within IAI47_04640at 977.098 kb on - strand, within IAI47_04640at 977.098 kb on - strand, within IAI47_04640at 977.098 kb on - strand, within IAI47_04640at 977.098 kb on - strand, within IAI47_04640at 977.098 kb on - strand, within IAI47_04640at 977.098 kb on - strand, within IAI47_04640at 977.098 kb on - strand, within IAI47_04640at 977.098 kb on - strand, within IAI47_04640at 977.129 kb on - strand, within IAI47_04640at 977.143 kb on + strand, within IAI47_04640at 977.143 kb on + strand, within IAI47_04640at 977.143 kb on + strand, within IAI47_04640at 977.143 kb on + strand, within IAI47_04640at 977.143 kb on + strand, within IAI47_04640at 977.144 kb on - strand, within IAI47_04640at 977.184 kb on + strand, within IAI47_04640at 977.184 kb on + strand, within IAI47_04640at 977.184 kb on + strand, within IAI47_04640at 977.185 kb on - strand, within IAI47_04640at 977.185 kb on - strand, within IAI47_04640at 977.185 kb on - strand, within IAI47_04640at 977.185 kb on - strand, within IAI47_04640at 977.185 kb on - strand, within IAI47_04640at 977.209 kb on + strand, within IAI47_04640at 977.210 kb on - strand, within IAI47_04640at 977.240 kb on - strand, within IAI47_04640at 977.256 kb on + strand, within IAI47_04640at 977.256 kb on + strand, within IAI47_04640at 977.256 kb on + strand, within IAI47_04640at 977.256 kb on + strand, within IAI47_04640at 977.257 kb on - strand, within IAI47_04640at 977.257 kb on - strand, within IAI47_04640at 977.257 kb on - strand, within IAI47_04640at 977.257 kb on - strand, within IAI47_04640at 977.321 kb on + strand, within IAI47_04640at 977.322 kb on - strand, within IAI47_04640at 977.341 kb on + strand, within IAI47_04640at 977.353 kb on + strand, within IAI47_04640at 977.354 kb on - strand, within IAI47_04640at 977.373 kb on - strand, within IAI47_04640at 977.419 kb on + strand, within IAI47_04640at 977.420 kb on - strand, within IAI47_04640at 977.420 kb on - strand, within IAI47_04640at 977.486 kb on + strand, within IAI47_04640at 977.501 kb on + strand, within IAI47_04640at 977.513 kb on + strand, within IAI47_04640at 977.702 kb on + strand, within IAI47_04640at 977.702 kb on + strand, within IAI47_04640at 977.702 kb on + strand, within IAI47_04640at 977.702 kb on + strand, within IAI47_04640at 977.702 kb on + strand, within IAI47_04640at 977.703 kb on - strand, within IAI47_04640at 977.703 kb on - strand, within IAI47_04640at 977.703 kb on - strand, within IAI47_04640at 977.703 kb on - strand, within IAI47_04640at 977.731 kb on + strand, within IAI47_04640at 977.732 kb on - strand, within IAI47_04640at 977.737 kb on + strand, within IAI47_04640at 977.738 kb on - strand, within IAI47_04640at 977.738 kb on - strand, within IAI47_04640at 977.779 kb on + strandat 977.780 kb on - strandat 977.780 kb on - strandat 977.780 kb on - strandat 977.913 kb on + strandat 977.913 kb on + strandat 977.960 kb on - strandat 977.960 kb on - strandat 977.960 kb on - strandat 977.970 kb on + strandat 977.970 kb on + strandat 977.971 kb on - strandat 977.971 kb on - strandat 978.043 kb on + strand, within IAI47_04645at 978.043 kb on + strand, within IAI47_04645at 978.150 kb on + strand, within IAI47_04645at 978.150 kb on + strand, within IAI47_04645at 978.151 kb on - strand, within IAI47_04645at 978.151 kb on - strand, within IAI47_04645at 978.151 kb on - strand, within IAI47_04645at 978.151 kb on - strand, within IAI47_04645at 978.158 kb on + strand, within IAI47_04645at 978.158 kb on + strand, within IAI47_04645at 978.198 kb on + strand, within IAI47_04645at 978.198 kb on + strand, within IAI47_04645at 978.229 kb on + strand, within IAI47_04645at 978.229 kb on + strand, within IAI47_04645at 978.230 kb on - strand, within IAI47_04645at 978.230 kb on - strand, within IAI47_04645at 978.230 kb on - strand, within IAI47_04645at 978.230 kb on - strand, within IAI47_04645at 978.270 kb on + strand, within IAI47_04645at 978.270 kb on + strand, within IAI47_04645at 978.270 kb on + strand, within IAI47_04645at 978.270 kb on + strand, within IAI47_04645at 978.271 kb on - strand, within IAI47_04645at 978.271 kb on - strand, within IAI47_04645at 978.314 kb on + strand, within IAI47_04645at 978.426 kb on + strand, within IAI47_04645at 978.426 kb on + strand, within IAI47_04645at 978.426 kb on + strand, within IAI47_04645at 978.539 kb on + strand, within IAI47_04645at 978.540 kb on - strand, within IAI47_04645at 978.630 kb on + strand, within IAI47_04645at 978.630 kb on + strand, within IAI47_04645at 978.630 kb on + strand, within IAI47_04645at 978.630 kb on + strand, within IAI47_04645at 978.631 kb on - strand, within IAI47_04645at 978.726 kb on + strand, within IAI47_04645at 978.726 kb on + strand, within IAI47_04645at 978.726 kb on + strand, within IAI47_04645at 978.726 kb on + strand, within IAI47_04645at 978.726 kb on + strand, within IAI47_04645at 978.726 kb on + strand, within IAI47_04645at 978.726 kb on + strand, within IAI47_04645at 978.726 kb on + strand, within IAI47_04645at 978.727 kb on - strand, within IAI47_04645at 978.727 kb on - strand, within IAI47_04645at 978.727 kb on - strand, within IAI47_04645at 978.727 kb on - strand, within IAI47_04645at 978.727 kb on - strand, within IAI47_04645at 978.910 kb on + strandat 978.910 kb on + strandat 978.961 kb on + strandat 978.962 kb on - strandat 978.962 kb on - strandat 978.962 kb on - strandat 979.036 kb on + strand, within IAI47_04650at 979.036 kb on + strand, within IAI47_04650at 979.036 kb on + strand, within IAI47_04650at 979.037 kb on - strand, within IAI47_04650at 979.037 kb on - strand, within IAI47_04650at 979.062 kb on + strand, within IAI47_04650at 979.063 kb on - strand, within IAI47_04650at 979.073 kb on + strand, within IAI47_04650at 979.074 kb on - strand, within IAI47_04650at 979.157 kb on + strand, within IAI47_04650at 979.157 kb on + strand, within IAI47_04650at 979.158 kb on - strand, within IAI47_04650at 979.348 kb on + strand, within IAI47_04650at 979.348 kb on + strand, within IAI47_04650at 979.349 kb on - strand, within IAI47_04650at 979.349 kb on - strandat 979.400 kb on + strand, within IAI47_04650at 979.418 kb on + strand, within IAI47_04650at 979.447 kb on - strand, within IAI47_04650at 979.447 kb on - strand, within IAI47_04650at 979.513 kb on + strand, within IAI47_04650at 979.513 kb on + strand, within IAI47_04650at 979.514 kb on - strand, within IAI47_04650at 979.538 kb on - strand, within IAI47_04650at 979.538 kb on - strand, within IAI47_04650at 979.538 kb on - strand, within IAI47_04650at 979.555 kb on - strand, within IAI47_04650at 979.563 kb on + strand, within IAI47_04650at 979.563 kb on + strand, within IAI47_04650at 979.612 kb on + strand, within IAI47_04650at 979.612 kb on + strand, within IAI47_04650at 979.704 kb on + strand, within IAI47_04650at 979.705 kb on - strand, within IAI47_04650at 979.710 kb on - strand, within IAI47_04650at 979.770 kb on - strand, within IAI47_04650at 979.770 kb on - strand, within IAI47_04650at 979.786 kb on + strand, within IAI47_04650at 979.787 kb on - strand, within IAI47_04650at 979.787 kb on - strand, within IAI47_04650at 979.791 kb on + strand, within IAI47_04650at 979.791 kb on + strand, within IAI47_04650at 979.791 kb on + strand, within IAI47_04650at 979.791 kb on + strand, within IAI47_04650at 979.791 kb on + strand, within IAI47_04650at 979.791 kb on + strand, within IAI47_04650at 979.792 kb on - strand, within IAI47_04650at 979.792 kb on - strand, within IAI47_04650at 979.792 kb on - strand, within IAI47_04650at 979.792 kb on - strand, within IAI47_04650at 979.792 kb on - strand, within IAI47_04650at 979.792 kb on - strand, within IAI47_04650at 979.812 kb on + strand, within IAI47_04650

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
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976,897 + -0.6
976,898 - -0.3
976,907 - -2.4
976,928 + IAI47_04640 0.11 -0.9
976,929 - IAI47_04640 0.11 +1.4
976,929 - IAI47_04640 0.11 -2.7
976,929 - IAI47_04640 0.11 -0.7
976,994 + IAI47_04640 0.17 -0.4
976,994 + IAI47_04640 0.17 -0.7
976,994 + IAI47_04640 0.17 +1.3
976,994 + IAI47_04640 0.17 -0.8
976,995 - IAI47_04640 0.18 +0.1
977,081 + IAI47_04640 0.26 -1.0
977,081 + IAI47_04640 0.26 -0.4
977,081 + IAI47_04640 0.26 -1.9
977,082 - IAI47_04640 0.26 -0.2
977,082 - IAI47_04640 0.26 -1.7
977,082 - IAI47_04640 0.26 +0.9
977,091 - IAI47_04640 0.27 -3.8
977,097 + IAI47_04640 0.27 +1.2
977,097 + IAI47_04640 0.27 -0.3
977,097 + IAI47_04640 0.27 -1.3
977,097 + IAI47_04640 0.27 -0.7
977,097 + IAI47_04640 0.27 -0.7
977,097 + IAI47_04640 0.27 +0.0
977,097 + IAI47_04640 0.27 -0.4
977,097 + IAI47_04640 0.27 -1.0
977,097 + IAI47_04640 0.27 -0.7
977,098 - IAI47_04640 0.27 -0.4
977,098 - IAI47_04640 0.27 +1.7
977,098 - IAI47_04640 0.27 -0.8
977,098 - IAI47_04640 0.27 -0.2
977,098 - IAI47_04640 0.27 +0.7
977,098 - IAI47_04640 0.27 -0.9
977,098 - IAI47_04640 0.27 -0.3
977,098 - IAI47_04640 0.27 +0.6
977,098 - IAI47_04640 0.27 -1.0
977,098 - IAI47_04640 0.27 +0.2
977,098 - IAI47_04640 0.27 -1.2
977,098 - IAI47_04640 0.27 -0.3
977,098 - IAI47_04640 0.27 +0.1
977,098 - IAI47_04640 0.27 -2.5
977,129 - IAI47_04640 0.30 -1.1
977,143 + IAI47_04640 0.32 +0.7
977,143 + IAI47_04640 0.32 -0.5
977,143 + IAI47_04640 0.32 +1.5
977,143 + IAI47_04640 0.32 -0.3
977,143 + IAI47_04640 0.32 -0.5
977,144 - IAI47_04640 0.32 -0.3
977,184 + IAI47_04640 0.36 +1.0
977,184 + IAI47_04640 0.36 +0.8
977,184 + IAI47_04640 0.36 -0.4
977,185 - IAI47_04640 0.36 -0.5
977,185 - IAI47_04640 0.36 +1.7
977,185 - IAI47_04640 0.36 -2.6
977,185 - IAI47_04640 0.36 +2.7
977,185 - IAI47_04640 0.36 -0.1
977,209 + IAI47_04640 0.38 -0.5
977,210 - IAI47_04640 0.38 +0.2
977,240 - IAI47_04640 0.41 +1.1
977,256 + IAI47_04640 0.42 -1.5
977,256 + IAI47_04640 0.42 +1.3
977,256 + IAI47_04640 0.42 +0.1
977,256 + IAI47_04640 0.42 -0.1
977,257 - IAI47_04640 0.42 -1.0
977,257 - IAI47_04640 0.42 -0.8
977,257 - IAI47_04640 0.42 -1.6
977,257 - IAI47_04640 0.42 +0.8
977,321 + IAI47_04640 0.49 -0.9
977,322 - IAI47_04640 0.49 -2.3
977,341 + IAI47_04640 0.50 +0.3
977,353 + IAI47_04640 0.52 +0.1
977,354 - IAI47_04640 0.52 +1.7
977,373 - IAI47_04640 0.54 +0.1
977,419 + IAI47_04640 0.58 -0.5
977,420 - IAI47_04640 0.58 +3.0
977,420 - IAI47_04640 0.58 -0.4
977,486 + IAI47_04640 0.64 +0.5
977,501 + IAI47_04640 0.66 +1.7
977,513 + IAI47_04640 0.67 +0.5
977,702 + IAI47_04640 0.85 +0.7
977,702 + IAI47_04640 0.85 -1.6
977,702 + IAI47_04640 0.85 +3.8
977,702 + IAI47_04640 0.85 -0.5
977,702 + IAI47_04640 0.85 +0.0
977,703 - IAI47_04640 0.85 +0.2
977,703 - IAI47_04640 0.85 -1.8
977,703 - IAI47_04640 0.85 -0.6
977,703 - IAI47_04640 0.85 -1.0
977,731 + IAI47_04640 0.88 -0.4
977,732 - IAI47_04640 0.88 -1.0
977,737 + IAI47_04640 0.88 +1.1
977,738 - IAI47_04640 0.88 -1.3
977,738 - IAI47_04640 0.88 -0.2
977,779 + +1.4
977,780 - -0.5
977,780 - -2.1
977,780 - +0.6
977,913 + +1.9
977,913 + +0.3
977,960 - +0.7
977,960 - -0.1
977,960 - -0.8
977,970 + -2.1
977,970 + -2.1
977,971 - -0.9
977,971 - -1.2
978,043 + IAI47_04645 0.17 +0.3
978,043 + IAI47_04645 0.17 -1.2
978,150 + IAI47_04645 0.28 +0.9
978,150 + IAI47_04645 0.28 +0.5
978,151 - IAI47_04645 0.28 -0.1
978,151 - IAI47_04645 0.28 -0.2
978,151 - IAI47_04645 0.28 +0.7
978,151 - IAI47_04645 0.28 +0.8
978,158 + IAI47_04645 0.28 -1.1
978,158 + IAI47_04645 0.28 -0.8
978,198 + IAI47_04645 0.33 +1.5
978,198 + IAI47_04645 0.33 +0.1
978,229 + IAI47_04645 0.36 -0.0
978,229 + IAI47_04645 0.36 +1.3
978,230 - IAI47_04645 0.36 -0.7
978,230 - IAI47_04645 0.36 -0.0
978,230 - IAI47_04645 0.36 -2.3
978,230 - IAI47_04645 0.36 +0.7
978,270 + IAI47_04645 0.40 +0.0
978,270 + IAI47_04645 0.40 +0.3
978,270 + IAI47_04645 0.40 -0.3
978,270 + IAI47_04645 0.40 +1.6
978,271 - IAI47_04645 0.40 +3.4
978,271 - IAI47_04645 0.40 -1.3
978,314 + IAI47_04645 0.44 -0.7
978,426 + IAI47_04645 0.56 +0.8
978,426 + IAI47_04645 0.56 +0.2
978,426 + IAI47_04645 0.56 +0.2
978,539 + IAI47_04645 0.67 -1.1
978,540 - IAI47_04645 0.67 +2.5
978,630 + IAI47_04645 0.76 -0.6
978,630 + IAI47_04645 0.76 +0.4
978,630 + IAI47_04645 0.76 +0.1
978,630 + IAI47_04645 0.76 -0.8
978,631 - IAI47_04645 0.76 +0.1
978,726 + IAI47_04645 0.86 +1.7
978,726 + IAI47_04645 0.86 -0.5
978,726 + IAI47_04645 0.86 -0.2
978,726 + IAI47_04645 0.86 +1.7
978,726 + IAI47_04645 0.86 +1.3
978,726 + IAI47_04645 0.86 +1.0
978,726 + IAI47_04645 0.86 +3.7
978,726 + IAI47_04645 0.86 +1.2
978,727 - IAI47_04645 0.86 +0.4
978,727 - IAI47_04645 0.86 -0.5
978,727 - IAI47_04645 0.86 -0.8
978,727 - IAI47_04645 0.86 -0.9
978,727 - IAI47_04645 0.86 -1.5
978,910 + +2.3
978,910 + -1.9
978,961 + -1.7
978,962 - +0.6
978,962 - -0.4
978,962 - +0.1
979,036 + IAI47_04650 0.12 -2.0
979,036 + IAI47_04650 0.12 -0.3
979,036 + IAI47_04650 0.12 -1.0
979,037 - IAI47_04650 0.12 +2.0
979,037 - IAI47_04650 0.12 -0.1
979,062 + IAI47_04650 0.14 +0.7
979,063 - IAI47_04650 0.14 -0.7
979,073 + IAI47_04650 0.14 +0.5
979,074 - IAI47_04650 0.14 -1.0
979,157 + IAI47_04650 0.20 -1.3
979,157 + IAI47_04650 0.20 -1.1
979,158 - IAI47_04650 0.20 -1.9
979,348 + IAI47_04650 0.33 +2.3
979,348 + IAI47_04650 0.33 -0.3
979,349 - IAI47_04650 0.33 -1.1
979,349 - +1.7
979,400 + IAI47_04650 0.36 +0.9
979,418 + IAI47_04650 0.37 +0.7
979,447 - IAI47_04650 0.39 +1.7
979,447 - IAI47_04650 0.39 +1.3
979,513 + IAI47_04650 0.43 +1.7
979,513 + IAI47_04650 0.43 +0.2
979,514 - IAI47_04650 0.44 +1.4
979,538 - IAI47_04650 0.45 +0.1
979,538 - IAI47_04650 0.45 -1.3
979,538 - IAI47_04650 0.45 +0.3
979,555 - IAI47_04650 0.46 -2.1
979,563 + IAI47_04650 0.47 -1.2
979,563 + IAI47_04650 0.47 -3.4
979,612 + IAI47_04650 0.50 -0.3
979,612 + IAI47_04650 0.50 +2.1
979,704 + IAI47_04650 0.56 +1.1
979,705 - IAI47_04650 0.56 -1.5
979,710 - IAI47_04650 0.57 -1.9
979,770 - IAI47_04650 0.61 +1.9
979,770 - IAI47_04650 0.61 -0.1
979,786 + IAI47_04650 0.62 -0.1
979,787 - IAI47_04650 0.62 -1.2
979,787 - IAI47_04650 0.62 -1.5
979,791 + IAI47_04650 0.62 -0.0
979,791 + IAI47_04650 0.62 +0.7
979,791 + IAI47_04650 0.62 -0.3
979,791 + IAI47_04650 0.62 +2.2
979,791 + IAI47_04650 0.62 -1.4
979,791 + IAI47_04650 0.62 -0.9
979,792 - IAI47_04650 0.62 +1.1
979,792 - IAI47_04650 0.62 +0.1
979,792 - IAI47_04650 0.62 -2.2
979,792 - IAI47_04650 0.62 +0.5
979,792 - IAI47_04650 0.62 -0.6
979,792 - IAI47_04650 0.62 +1.1
979,812 + IAI47_04650 0.63 +0.1

Or see this region's nucleotide sequence