Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS23665

Experiment: Cytidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS23660 and BWI76_RS23665 are separated by 53 nucleotidesBWI76_RS23665 and BWI76_RS23670 are separated by 363 nucleotides BWI76_RS23660: BWI76_RS23660 - pentose kinase, at 4,937,909 to 4,939,414 _RS23660 BWI76_RS23665: BWI76_RS23665 - 2-deoxyribose-5-phosphate aldolase, at 4,939,468 to 4,940,217 _RS23665 BWI76_RS23670: BWI76_RS23670 - alkaline phosphatase, at 4,940,581 to 4,941,381 _RS23670 Position (kb) 4939 4940 4941Strain fitness (log2 ratio) -2 -1 0 1 2at 4938.529 kb on + strand, within BWI76_RS23660at 4938.669 kb on - strand, within BWI76_RS23660at 4938.781 kb on + strand, within BWI76_RS23660at 4939.262 kb on + strand, within BWI76_RS23660at 4939.279 kb on + strandat 4939.279 kb on + strandat 4939.287 kb on - strandat 4939.287 kb on - strandat 4939.828 kb on + strand, within BWI76_RS23665at 4939.857 kb on - strand, within BWI76_RS23665at 4939.879 kb on + strand, within BWI76_RS23665at 4940.000 kb on + strand, within BWI76_RS23665at 4940.042 kb on + strand, within BWI76_RS23665at 4940.088 kb on + strand, within BWI76_RS23665at 4940.093 kb on + strand, within BWI76_RS23665at 4940.133 kb on - strand, within BWI76_RS23665at 4940.133 kb on - strand, within BWI76_RS23665at 4940.331 kb on - strandat 4940.466 kb on - strandat 4940.473 kb on + strandat 4940.566 kb on + strandat 4940.566 kb on + strandat 4940.571 kb on + strandat 4940.576 kb on + strandat 4940.579 kb on - strandat 4940.623 kb on + strandat 4941.022 kb on - strand, within BWI76_RS23670at 4941.207 kb on - strand, within BWI76_RS23670

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine (C)
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4,938,529 + BWI76_RS23660 0.41 -0.5
4,938,669 - BWI76_RS23660 0.50 +0.1
4,938,781 + BWI76_RS23660 0.58 -0.0
4,939,262 + BWI76_RS23660 0.90 +1.6
4,939,279 + -0.0
4,939,279 + +1.8
4,939,287 - +0.1
4,939,287 - +0.2
4,939,828 + BWI76_RS23665 0.48 +0.4
4,939,857 - BWI76_RS23665 0.52 +1.6
4,939,879 + BWI76_RS23665 0.55 -0.5
4,940,000 + BWI76_RS23665 0.71 +0.0
4,940,042 + BWI76_RS23665 0.77 +0.4
4,940,088 + BWI76_RS23665 0.83 +0.6
4,940,093 + BWI76_RS23665 0.83 -0.8
4,940,133 - BWI76_RS23665 0.89 +0.5
4,940,133 - BWI76_RS23665 0.89 -2.0
4,940,331 - -0.6
4,940,466 - -0.2
4,940,473 + -0.1
4,940,566 + +1.2
4,940,566 + -0.6
4,940,571 + +1.0
4,940,576 + -0.3
4,940,579 - -0.4
4,940,623 + -0.5
4,941,022 - BWI76_RS23670 0.55 -1.0
4,941,207 - BWI76_RS23670 0.78 -0.1

Or see this region's nucleotide sequence