Experiment: Cytidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16925 and BWI76_RS16930 are separated by 190 nucleotides BWI76_RS16930 and BWI76_RS16935 are separated by 63 nucleotides BWI76_RS16935 and BWI76_RS16940 are separated by 31 nucleotides
BWI76_RS16925: BWI76_RS16925 - 3-(3-hydroxyphenyl)propionate hydroxylase, at 3,509,200 to 3,510,867
_RS16925
BWI76_RS16930: BWI76_RS16930 - transcriptional regulator, at 3,511,058 to 3,511,864
_RS16930
BWI76_RS16935: BWI76_RS16935 - shikimate dehydrogenase, at 3,511,928 to 3,512,764
_RS16935
BWI76_RS16940: BWI76_RS16940 - MFS transporter, at 3,512,796 to 3,514,115
_RS16940
Position (kb)
3511
3512 Strain fitness (log2 ratio)
-2
-1
0
1 at 3510.070 kb on - strand, within BWI76_RS16925 at 3510.179 kb on - strand, within BWI76_RS16925 at 3510.192 kb on + strand, within BWI76_RS16925 at 3510.497 kb on - strand, within BWI76_RS16925 at 3510.514 kb on - strand, within BWI76_RS16925 at 3510.662 kb on - strand, within BWI76_RS16925 at 3510.824 kb on - strand at 3510.881 kb on + strand at 3510.966 kb on + strand at 3510.966 kb on + strand at 3511.275 kb on + strand, within BWI76_RS16930 at 3511.732 kb on - strand, within BWI76_RS16930 at 3511.754 kb on + strand, within BWI76_RS16930 at 3511.957 kb on + strand at 3512.130 kb on - strand, within BWI76_RS16935 at 3512.708 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (C) remove 3,510,070 - BWI76_RS16925 0.52 -2.0 3,510,179 - BWI76_RS16925 0.59 +0.1 3,510,192 + BWI76_RS16925 0.59 -0.4 3,510,497 - BWI76_RS16925 0.78 -0.3 3,510,514 - BWI76_RS16925 0.79 +0.2 3,510,662 - BWI76_RS16925 0.88 +0.4 3,510,824 - +0.1 3,510,881 + +0.7 3,510,966 + +0.4 3,510,966 + -0.3 3,511,275 + BWI76_RS16930 0.27 +0.5 3,511,732 - BWI76_RS16930 0.84 +0.5 3,511,754 + BWI76_RS16930 0.86 +0.5 3,511,957 + -0.8 3,512,130 - BWI76_RS16935 0.24 +0.8 3,512,708 - -1.5
Or see this region's nucleotide sequence