Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_26640 and AO353_26645 are separated by 0 nucleotides AO353_26645 and AO353_26650 are separated by 6 nucleotides
AO353_26640: AO353_26640 - 2-oxoisovalerate dehydrogenase, at 5,832,774 to 5,833,832
_26640
AO353_26645: AO353_26645 - branched-chain alpha-keto acid dehydrogenase subunit E2, at 5,833,833 to 5,835,110
_26645
AO353_26650: AO353_26650 - dihydrolipoamide dehydrogenase, at 5,835,117 to 5,836,502
_26650
Position (kb) 5833
5834
5835
5836 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5832.960 kb on + strand, within AO353_26640 at 5832.961 kb on - strand, within AO353_26640 at 5833.043 kb on - strand, within AO353_26640 at 5833.074 kb on + strand, within AO353_26640 at 5833.074 kb on + strand, within AO353_26640 at 5833.075 kb on - strand, within AO353_26640 at 5833.188 kb on + strand, within AO353_26640 at 5833.189 kb on - strand, within AO353_26640 at 5833.347 kb on + strand, within AO353_26640 at 5833.431 kb on + strand, within AO353_26640 at 5833.431 kb on + strand, within AO353_26640 at 5833.431 kb on + strand, within AO353_26640 at 5833.431 kb on + strand, within AO353_26640 at 5833.431 kb on + strand, within AO353_26640 at 5833.432 kb on - strand, within AO353_26640 at 5833.432 kb on - strand, within AO353_26640 at 5833.432 kb on - strand, within AO353_26640 at 5833.432 kb on - strand, within AO353_26640 at 5833.495 kb on - strand, within AO353_26640 at 5833.495 kb on - strand, within AO353_26640 at 5833.495 kb on - strand, within AO353_26640 at 5833.509 kb on + strand, within AO353_26640 at 5833.509 kb on + strand, within AO353_26640 at 5833.509 kb on + strand, within AO353_26640 at 5833.509 kb on + strand, within AO353_26640 at 5833.510 kb on - strand, within AO353_26640 at 5833.510 kb on - strand, within AO353_26640 at 5833.510 kb on - strand, within AO353_26640 at 5833.745 kb on + strand at 5833.777 kb on - strand at 5833.777 kb on - strand at 5833.851 kb on - strand at 5834.061 kb on - strand, within AO353_26645 at 5834.355 kb on + strand, within AO353_26645 at 5834.355 kb on + strand, within AO353_26645 at 5834.356 kb on - strand, within AO353_26645 at 5834.356 kb on - strand, within AO353_26645 at 5834.502 kb on + strand, within AO353_26645 at 5834.503 kb on - strand, within AO353_26645 at 5834.503 kb on - strand, within AO353_26645 at 5835.108 kb on + strand at 5835.108 kb on + strand at 5835.109 kb on - strand at 5835.109 kb on - strand at 5835.109 kb on - strand at 5835.109 kb on - strand at 5835.109 kb on - strand at 5835.109 kb on - strand at 5835.109 kb on - strand at 5835.111 kb on + strand at 5835.111 kb on + strand at 5835.111 kb on + strand at 5835.111 kb on + strand at 5835.111 kb on + strand at 5835.111 kb on + strand at 5835.112 kb on - strand at 5835.112 kb on - strand at 5835.171 kb on + strand at 5835.660 kb on + strand, within AO353_26650 at 5835.747 kb on + strand, within AO353_26650 at 5835.747 kb on + strand, within AO353_26650 at 5835.748 kb on - strand, within AO353_26650 at 5835.748 kb on - strand, within AO353_26650 at 5835.748 kb on - strand, within AO353_26650 at 5835.807 kb on + strand, within AO353_26650 at 5835.807 kb on + strand, within AO353_26650 at 5835.808 kb on - strand, within AO353_26650 at 5835.808 kb on - strand, within AO353_26650 at 5835.848 kb on + strand, within AO353_26650 at 5835.924 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 5,832,960 + AO353_26640 0.18 -1.8 5,832,961 - AO353_26640 0.18 +0.1 5,833,043 - AO353_26640 0.25 +0.7 5,833,074 + AO353_26640 0.28 +1.2 5,833,074 + AO353_26640 0.28 -1.8 5,833,075 - AO353_26640 0.28 -1.4 5,833,188 + AO353_26640 0.39 -0.1 5,833,189 - AO353_26640 0.39 +1.2 5,833,347 + AO353_26640 0.54 +0.6 5,833,431 + AO353_26640 0.62 -0.5 5,833,431 + AO353_26640 0.62 +1.5 5,833,431 + AO353_26640 0.62 -0.4 5,833,431 + AO353_26640 0.62 -1.2 5,833,431 + AO353_26640 0.62 +0.0 5,833,432 - AO353_26640 0.62 +0.5 5,833,432 - AO353_26640 0.62 -0.7 5,833,432 - AO353_26640 0.62 -0.8 5,833,432 - AO353_26640 0.62 +0.2 5,833,495 - AO353_26640 0.68 -0.3 5,833,495 - AO353_26640 0.68 +0.2 5,833,495 - AO353_26640 0.68 -0.9 5,833,509 + AO353_26640 0.69 -0.1 5,833,509 + AO353_26640 0.69 +0.8 5,833,509 + AO353_26640 0.69 +2.2 5,833,509 + AO353_26640 0.69 -0.7 5,833,510 - AO353_26640 0.69 +1.8 5,833,510 - AO353_26640 0.69 -1.3 5,833,510 - AO353_26640 0.69 -0.0 5,833,745 + -0.9 5,833,777 - +1.3 5,833,777 - +0.9 5,833,851 - -0.2 5,834,061 - AO353_26645 0.18 -0.9 5,834,355 + AO353_26645 0.41 -0.1 5,834,355 + AO353_26645 0.41 -1.9 5,834,356 - AO353_26645 0.41 -1.5 5,834,356 - AO353_26645 0.41 -0.0 5,834,502 + AO353_26645 0.52 +0.0 5,834,503 - AO353_26645 0.52 +0.5 5,834,503 - AO353_26645 0.52 -1.4 5,835,108 + +0.0 5,835,108 + -0.1 5,835,109 - +0.6 5,835,109 - +0.6 5,835,109 - -1.8 5,835,109 - -2.3 5,835,109 - -0.7 5,835,109 - +0.7 5,835,109 - -1.0 5,835,111 + +0.9 5,835,111 + +0.6 5,835,111 + +0.0 5,835,111 + -0.1 5,835,111 + +0.7 5,835,111 + -0.2 5,835,112 - -0.8 5,835,112 - -0.4 5,835,171 + +0.5 5,835,660 + AO353_26650 0.39 -1.1 5,835,747 + AO353_26650 0.45 -1.5 5,835,747 + AO353_26650 0.45 -0.3 5,835,748 - AO353_26650 0.46 -0.9 5,835,748 - AO353_26650 0.46 +1.2 5,835,748 - AO353_26650 0.46 +0.4 5,835,807 + AO353_26650 0.50 -1.2 5,835,807 + AO353_26650 0.50 -0.5 5,835,808 - AO353_26650 0.50 -0.8 5,835,808 - AO353_26650 0.50 +0.5 5,835,848 + AO353_26650 0.53 -2.3 5,835,924 - +1.5
Or see this region's nucleotide sequence