Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_26645

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_26640 and AO353_26645 are separated by 0 nucleotidesAO353_26645 and AO353_26650 are separated by 6 nucleotides AO353_26640: AO353_26640 - 2-oxoisovalerate dehydrogenase, at 5,832,774 to 5,833,832 _26640 AO353_26645: AO353_26645 - branched-chain alpha-keto acid dehydrogenase subunit E2, at 5,833,833 to 5,835,110 _26645 AO353_26650: AO353_26650 - dihydrolipoamide dehydrogenase, at 5,835,117 to 5,836,502 _26650 Position (kb) 5833 5834 5835 5836Strain fitness (log2 ratio) -2 -1 0 1 2at 5832.960 kb on + strand, within AO353_26640at 5832.961 kb on - strand, within AO353_26640at 5833.043 kb on - strand, within AO353_26640at 5833.074 kb on + strand, within AO353_26640at 5833.074 kb on + strand, within AO353_26640at 5833.075 kb on - strand, within AO353_26640at 5833.188 kb on + strand, within AO353_26640at 5833.189 kb on - strand, within AO353_26640at 5833.347 kb on + strand, within AO353_26640at 5833.431 kb on + strand, within AO353_26640at 5833.431 kb on + strand, within AO353_26640at 5833.431 kb on + strand, within AO353_26640at 5833.431 kb on + strand, within AO353_26640at 5833.431 kb on + strand, within AO353_26640at 5833.432 kb on - strand, within AO353_26640at 5833.432 kb on - strand, within AO353_26640at 5833.432 kb on - strand, within AO353_26640at 5833.432 kb on - strand, within AO353_26640at 5833.495 kb on - strand, within AO353_26640at 5833.495 kb on - strand, within AO353_26640at 5833.495 kb on - strand, within AO353_26640at 5833.509 kb on + strand, within AO353_26640at 5833.509 kb on + strand, within AO353_26640at 5833.509 kb on + strand, within AO353_26640at 5833.509 kb on + strand, within AO353_26640at 5833.510 kb on - strand, within AO353_26640at 5833.510 kb on - strand, within AO353_26640at 5833.510 kb on - strand, within AO353_26640at 5833.745 kb on + strandat 5833.777 kb on - strandat 5833.777 kb on - strandat 5833.851 kb on - strandat 5834.061 kb on - strand, within AO353_26645at 5834.355 kb on + strand, within AO353_26645at 5834.355 kb on + strand, within AO353_26645at 5834.356 kb on - strand, within AO353_26645at 5834.356 kb on - strand, within AO353_26645at 5834.502 kb on + strand, within AO353_26645at 5834.503 kb on - strand, within AO353_26645at 5834.503 kb on - strand, within AO353_26645at 5835.108 kb on + strandat 5835.108 kb on + strandat 5835.109 kb on - strandat 5835.109 kb on - strandat 5835.109 kb on - strandat 5835.109 kb on - strandat 5835.109 kb on - strandat 5835.109 kb on - strandat 5835.109 kb on - strandat 5835.111 kb on + strandat 5835.111 kb on + strandat 5835.111 kb on + strandat 5835.111 kb on + strandat 5835.111 kb on + strandat 5835.111 kb on + strandat 5835.112 kb on - strandat 5835.112 kb on - strandat 5835.171 kb on + strandat 5835.660 kb on + strand, within AO353_26650at 5835.747 kb on + strand, within AO353_26650at 5835.747 kb on + strand, within AO353_26650at 5835.748 kb on - strand, within AO353_26650at 5835.748 kb on - strand, within AO353_26650at 5835.748 kb on - strand, within AO353_26650at 5835.807 kb on + strand, within AO353_26650at 5835.807 kb on + strand, within AO353_26650at 5835.808 kb on - strand, within AO353_26650at 5835.808 kb on - strand, within AO353_26650at 5835.848 kb on + strand, within AO353_26650at 5835.924 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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5,832,960 + AO353_26640 0.18 -1.8
5,832,961 - AO353_26640 0.18 +0.1
5,833,043 - AO353_26640 0.25 +0.7
5,833,074 + AO353_26640 0.28 +1.2
5,833,074 + AO353_26640 0.28 -1.8
5,833,075 - AO353_26640 0.28 -1.4
5,833,188 + AO353_26640 0.39 -0.1
5,833,189 - AO353_26640 0.39 +1.2
5,833,347 + AO353_26640 0.54 +0.6
5,833,431 + AO353_26640 0.62 -0.5
5,833,431 + AO353_26640 0.62 +1.5
5,833,431 + AO353_26640 0.62 -0.4
5,833,431 + AO353_26640 0.62 -1.2
5,833,431 + AO353_26640 0.62 +0.0
5,833,432 - AO353_26640 0.62 +0.5
5,833,432 - AO353_26640 0.62 -0.7
5,833,432 - AO353_26640 0.62 -0.8
5,833,432 - AO353_26640 0.62 +0.2
5,833,495 - AO353_26640 0.68 -0.3
5,833,495 - AO353_26640 0.68 +0.2
5,833,495 - AO353_26640 0.68 -0.9
5,833,509 + AO353_26640 0.69 -0.1
5,833,509 + AO353_26640 0.69 +0.8
5,833,509 + AO353_26640 0.69 +2.2
5,833,509 + AO353_26640 0.69 -0.7
5,833,510 - AO353_26640 0.69 +1.8
5,833,510 - AO353_26640 0.69 -1.3
5,833,510 - AO353_26640 0.69 -0.0
5,833,745 + -0.9
5,833,777 - +1.3
5,833,777 - +0.9
5,833,851 - -0.2
5,834,061 - AO353_26645 0.18 -0.9
5,834,355 + AO353_26645 0.41 -0.1
5,834,355 + AO353_26645 0.41 -1.9
5,834,356 - AO353_26645 0.41 -1.5
5,834,356 - AO353_26645 0.41 -0.0
5,834,502 + AO353_26645 0.52 +0.0
5,834,503 - AO353_26645 0.52 +0.5
5,834,503 - AO353_26645 0.52 -1.4
5,835,108 + +0.0
5,835,108 + -0.1
5,835,109 - +0.6
5,835,109 - +0.6
5,835,109 - -1.8
5,835,109 - -2.3
5,835,109 - -0.7
5,835,109 - +0.7
5,835,109 - -1.0
5,835,111 + +0.9
5,835,111 + +0.6
5,835,111 + +0.0
5,835,111 + -0.1
5,835,111 + +0.7
5,835,111 + -0.2
5,835,112 - -0.8
5,835,112 - -0.4
5,835,171 + +0.5
5,835,660 + AO353_26650 0.39 -1.1
5,835,747 + AO353_26650 0.45 -1.5
5,835,747 + AO353_26650 0.45 -0.3
5,835,748 - AO353_26650 0.46 -0.9
5,835,748 - AO353_26650 0.46 +1.2
5,835,748 - AO353_26650 0.46 +0.4
5,835,807 + AO353_26650 0.50 -1.2
5,835,807 + AO353_26650 0.50 -0.5
5,835,808 - AO353_26650 0.50 -0.8
5,835,808 - AO353_26650 0.50 +0.5
5,835,848 + AO353_26650 0.53 -2.3
5,835,924 - +1.5

Or see this region's nucleotide sequence