Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_24440

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_24435 and AO353_24440 are separated by 102 nucleotides AO353_24435: AO353_24435 - flavoprotein, at 5,371,345 to 5,372,847 _24435 AO353_24440: AO353_24440 - reactive intermediate/imine deaminase, at 5,372,950 to 5,373,327 _24440 Position (kb) 5372 5373 5374Strain fitness (log2 ratio) -2 -1 0 1 2at 5372.049 kb on - strand, within AO353_24435at 5372.114 kb on + strand, within AO353_24435at 5372.154 kb on + strand, within AO353_24435at 5372.158 kb on - strand, within AO353_24435at 5372.233 kb on + strand, within AO353_24435at 5372.234 kb on - strand, within AO353_24435at 5372.245 kb on - strand, within AO353_24435at 5372.254 kb on + strand, within AO353_24435at 5372.255 kb on - strand, within AO353_24435at 5372.281 kb on + strand, within AO353_24435at 5372.300 kb on + strand, within AO353_24435at 5372.352 kb on - strand, within AO353_24435at 5372.417 kb on - strand, within AO353_24435at 5372.484 kb on + strand, within AO353_24435at 5372.485 kb on - strand, within AO353_24435at 5372.509 kb on + strand, within AO353_24435at 5372.635 kb on + strand, within AO353_24435at 5372.636 kb on - strand, within AO353_24435at 5372.851 kb on - strandat 5372.851 kb on - strandat 5372.897 kb on + strandat 5373.176 kb on + strand, within AO353_24440at 5373.192 kb on - strand, within AO353_24440at 5373.221 kb on - strand, within AO353_24440at 5373.221 kb on - strand, within AO353_24440at 5373.359 kb on - strandat 5373.359 kb on - strandat 5373.446 kb on - strandat 5373.512 kb on - strandat 5373.512 kb on - strandat 5373.521 kb on - strandat 5373.595 kb on + strandat 5373.601 kb on - strandat 5373.730 kb on - strandat 5373.767 kb on - strandat 5373.767 kb on - strandat 5373.767 kb on - strandat 5373.770 kb on + strandat 5373.816 kb on + strandat 5373.862 kb on + strandat 5374.011 kb on + strandat 5374.046 kb on + strandat 5374.060 kb on + strandat 5374.111 kb on + strandat 5374.117 kb on - strandat 5374.231 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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5,372,049 - AO353_24435 0.47 -2.0
5,372,114 + AO353_24435 0.51 -1.0
5,372,154 + AO353_24435 0.54 -1.5
5,372,158 - AO353_24435 0.54 +0.0
5,372,233 + AO353_24435 0.59 +0.3
5,372,234 - AO353_24435 0.59 -1.4
5,372,245 - AO353_24435 0.60 -1.5
5,372,254 + AO353_24435 0.60 -0.6
5,372,255 - AO353_24435 0.61 -0.0
5,372,281 + AO353_24435 0.62 -0.7
5,372,300 + AO353_24435 0.64 -1.4
5,372,352 - AO353_24435 0.67 +1.6
5,372,417 - AO353_24435 0.71 -0.3
5,372,484 + AO353_24435 0.76 -0.4
5,372,485 - AO353_24435 0.76 -0.5
5,372,509 + AO353_24435 0.77 -0.5
5,372,635 + AO353_24435 0.86 +0.3
5,372,636 - AO353_24435 0.86 -1.5
5,372,851 - +0.8
5,372,851 - +0.6
5,372,897 + +0.8
5,373,176 + AO353_24440 0.60 -2.2
5,373,192 - AO353_24440 0.64 -1.9
5,373,221 - AO353_24440 0.72 -0.4
5,373,221 - AO353_24440 0.72 -0.8
5,373,359 - -0.1
5,373,359 - -0.0
5,373,446 - -0.6
5,373,512 - -1.1
5,373,512 - -0.8
5,373,521 - -1.5
5,373,595 + +1.1
5,373,601 - +0.7
5,373,730 - +0.2
5,373,767 - -1.2
5,373,767 - -0.4
5,373,767 - -0.6
5,373,770 + +1.8
5,373,816 + +1.5
5,373,862 + -0.3
5,374,011 + +0.2
5,374,046 + +0.7
5,374,060 + -0.5
5,374,111 + -0.6
5,374,117 - +0.6
5,374,231 + -0.2

Or see this region's nucleotide sequence