Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_24435 and AO353_24440 are separated by 102 nucleotides
AO353_24435: AO353_24435 - flavoprotein, at 5,371,345 to 5,372,847
_24435
AO353_24440: AO353_24440 - reactive intermediate/imine deaminase, at 5,372,950 to 5,373,327
_24440
Position (kb)
5372
5373
5374 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5372.049 kb on - strand, within AO353_24435 at 5372.114 kb on + strand, within AO353_24435 at 5372.154 kb on + strand, within AO353_24435 at 5372.158 kb on - strand, within AO353_24435 at 5372.233 kb on + strand, within AO353_24435 at 5372.234 kb on - strand, within AO353_24435 at 5372.245 kb on - strand, within AO353_24435 at 5372.254 kb on + strand, within AO353_24435 at 5372.255 kb on - strand, within AO353_24435 at 5372.281 kb on + strand, within AO353_24435 at 5372.300 kb on + strand, within AO353_24435 at 5372.352 kb on - strand, within AO353_24435 at 5372.417 kb on - strand, within AO353_24435 at 5372.484 kb on + strand, within AO353_24435 at 5372.485 kb on - strand, within AO353_24435 at 5372.509 kb on + strand, within AO353_24435 at 5372.635 kb on + strand, within AO353_24435 at 5372.636 kb on - strand, within AO353_24435 at 5372.851 kb on - strand at 5372.851 kb on - strand at 5372.897 kb on + strand at 5373.176 kb on + strand, within AO353_24440 at 5373.192 kb on - strand, within AO353_24440 at 5373.221 kb on - strand, within AO353_24440 at 5373.221 kb on - strand, within AO353_24440 at 5373.359 kb on - strand at 5373.359 kb on - strand at 5373.446 kb on - strand at 5373.512 kb on - strand at 5373.512 kb on - strand at 5373.521 kb on - strand at 5373.595 kb on + strand at 5373.601 kb on - strand at 5373.730 kb on - strand at 5373.767 kb on - strand at 5373.767 kb on - strand at 5373.767 kb on - strand at 5373.770 kb on + strand at 5373.816 kb on + strand at 5373.862 kb on + strand at 5374.011 kb on + strand at 5374.046 kb on + strand at 5374.060 kb on + strand at 5374.111 kb on + strand at 5374.117 kb on - strand at 5374.231 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 5,372,049 - AO353_24435 0.47 -2.0 5,372,114 + AO353_24435 0.51 -1.0 5,372,154 + AO353_24435 0.54 -1.5 5,372,158 - AO353_24435 0.54 +0.0 5,372,233 + AO353_24435 0.59 +0.3 5,372,234 - AO353_24435 0.59 -1.4 5,372,245 - AO353_24435 0.60 -1.5 5,372,254 + AO353_24435 0.60 -0.6 5,372,255 - AO353_24435 0.61 -0.0 5,372,281 + AO353_24435 0.62 -0.7 5,372,300 + AO353_24435 0.64 -1.4 5,372,352 - AO353_24435 0.67 +1.6 5,372,417 - AO353_24435 0.71 -0.3 5,372,484 + AO353_24435 0.76 -0.4 5,372,485 - AO353_24435 0.76 -0.5 5,372,509 + AO353_24435 0.77 -0.5 5,372,635 + AO353_24435 0.86 +0.3 5,372,636 - AO353_24435 0.86 -1.5 5,372,851 - +0.8 5,372,851 - +0.6 5,372,897 + +0.8 5,373,176 + AO353_24440 0.60 -2.2 5,373,192 - AO353_24440 0.64 -1.9 5,373,221 - AO353_24440 0.72 -0.4 5,373,221 - AO353_24440 0.72 -0.8 5,373,359 - -0.1 5,373,359 - -0.0 5,373,446 - -0.6 5,373,512 - -1.1 5,373,512 - -0.8 5,373,521 - -1.5 5,373,595 + +1.1 5,373,601 - +0.7 5,373,730 - +0.2 5,373,767 - -1.2 5,373,767 - -0.4 5,373,767 - -0.6 5,373,770 + +1.8 5,373,816 + +1.5 5,373,862 + -0.3 5,374,011 + +0.2 5,374,046 + +0.7 5,374,060 + -0.5 5,374,111 + -0.6 5,374,117 - +0.6 5,374,231 + -0.2
Or see this region's nucleotide sequence