Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_20830 and AO353_20835 are separated by 23 nucleotides AO353_20835 and AO353_20840 overlap by 4 nucleotides AO353_20840 and AO353_20845 are separated by 45 nucleotides
AO353_20830: AO353_20830 - LacI family transcriptional regulator, at 4,561,750 to 4,562,769
_20830
AO353_20835: AO353_20835 - Ribokinase (EC 2.7.1.15) (from data) , at 4,562,793 to 4,563,710
_20835
AO353_20840: AO353_20840 - ribose pyranase, at 4,563,707 to 4,564,111
_20840
AO353_20845: AO353_20845 - uridine/adenosine nucleosidase (EC 3.2.2.3; EC 3.2.2.7) (from data) , at 4,564,157 to 4,565,185
_20845
Position (kb)
4562
4563
4564 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6 at 4561.793 kb on - strand at 4561.793 kb on - strand at 4561.882 kb on + strand, within AO353_20830 at 4561.883 kb on - strand, within AO353_20830 at 4561.883 kb on - strand, within AO353_20830 at 4561.883 kb on - strand, within AO353_20830 at 4561.932 kb on + strand, within AO353_20830 at 4561.933 kb on - strand, within AO353_20830 at 4561.933 kb on - strand, within AO353_20830 at 4561.933 kb on - strand, within AO353_20830 at 4561.990 kb on - strand, within AO353_20830 at 4562.000 kb on - strand, within AO353_20830 at 4562.000 kb on - strand, within AO353_20830 at 4562.068 kb on + strand, within AO353_20830 at 4562.068 kb on + strand, within AO353_20830 at 4562.192 kb on + strand, within AO353_20830 at 4562.216 kb on + strand, within AO353_20830 at 4562.217 kb on - strand, within AO353_20830 at 4562.234 kb on - strand, within AO353_20830 at 4562.234 kb on - strand, within AO353_20830 at 4562.242 kb on + strand, within AO353_20830 at 4562.243 kb on - strand, within AO353_20830 at 4562.243 kb on - strand, within AO353_20830 at 4562.243 kb on - strand, within AO353_20830 at 4562.243 kb on - strand, within AO353_20830 at 4562.243 kb on - strand, within AO353_20830 at 4562.243 kb on - strand, within AO353_20830 at 4562.292 kb on + strand, within AO353_20830 at 4562.292 kb on + strand, within AO353_20830 at 4562.310 kb on + strand, within AO353_20830 at 4562.310 kb on + strand, within AO353_20830 at 4562.310 kb on + strand, within AO353_20830 at 4562.310 kb on + strand, within AO353_20830 at 4562.311 kb on - strand, within AO353_20830 at 4562.311 kb on - strand, within AO353_20830 at 4562.311 kb on - strand, within AO353_20830 at 4562.311 kb on - strand, within AO353_20830 at 4562.311 kb on - strand, within AO353_20830 at 4562.311 kb on - strand, within AO353_20830 at 4562.501 kb on + strand, within AO353_20830 at 4562.584 kb on + strand, within AO353_20830 at 4562.584 kb on + strand, within AO353_20830 at 4562.584 kb on + strand, within AO353_20830 at 4562.585 kb on - strand, within AO353_20830 at 4562.585 kb on - strand, within AO353_20830 at 4562.651 kb on + strand, within AO353_20830 at 4562.652 kb on - strand, within AO353_20830 at 4562.751 kb on - strand at 4562.751 kb on - strand at 4562.784 kb on + strand at 4562.792 kb on + strand at 4562.792 kb on + strand at 4562.792 kb on + strand at 4562.792 kb on + strand at 4562.792 kb on + strand at 4562.792 kb on + strand at 4562.792 kb on + strand at 4562.792 kb on + strand at 4562.792 kb on + strand at 4562.792 kb on + strand at 4562.792 kb on + strand at 4562.792 kb on + strand at 4562.792 kb on + strand at 4562.792 kb on + strand at 4562.792 kb on + strand at 4562.792 kb on + strand at 4562.792 kb on + strand at 4562.792 kb on + strand at 4562.793 kb on - strand at 4562.793 kb on - strand at 4562.793 kb on - strand at 4562.793 kb on - strand at 4562.793 kb on - strand at 4562.793 kb on - strand at 4562.793 kb on - strand at 4562.793 kb on - strand at 4562.793 kb on - strand at 4562.793 kb on - strand at 4562.793 kb on - strand at 4562.793 kb on - strand at 4562.793 kb on - strand at 4562.807 kb on - strand at 4562.815 kb on + strand at 4562.815 kb on + strand at 4562.815 kb on + strand at 4562.816 kb on - strand at 4562.816 kb on - strand at 4562.816 kb on - strand at 4562.816 kb on - strand at 4562.816 kb on - strand at 4562.816 kb on - strand at 4563.234 kb on + strand, within AO353_20835 at 4563.234 kb on + strand, within AO353_20835 at 4563.234 kb on + strand, within AO353_20835 at 4563.235 kb on - strand, within AO353_20835 at 4563.235 kb on - strand, within AO353_20835 at 4563.235 kb on - strand, within AO353_20835 at 4563.235 kb on - strand, within AO353_20835 at 4563.235 kb on - strand, within AO353_20835 at 4563.235 kb on - strand, within AO353_20835 at 4563.333 kb on + strand, within AO353_20835 at 4563.333 kb on + strand, within AO353_20835 at 4563.333 kb on + strand, within AO353_20835 at 4563.688 kb on + strand at 4563.689 kb on - strand at 4563.689 kb on - strand at 4563.689 kb on - strand at 4563.865 kb on + strand, within AO353_20840 at 4563.865 kb on + strand, within AO353_20840 at 4563.865 kb on + strand, within AO353_20840 at 4564.018 kb on + strand, within AO353_20840 at 4564.024 kb on - strand, within AO353_20840 at 4564.024 kb on - strand, within AO353_20840 at 4564.074 kb on - strand at 4564.074 kb on - strand at 4564.109 kb on + strand at 4564.110 kb on - strand at 4564.110 kb on - strand at 4564.110 kb on - strand at 4564.135 kb on - strand at 4564.156 kb on + strand at 4564.156 kb on + strand at 4564.156 kb on + strand at 4564.156 kb on + strand at 4564.157 kb on - strand at 4564.157 kb on - strand at 4564.157 kb on - strand at 4564.157 kb on - strand at 4564.160 kb on + strand at 4564.160 kb on + strand at 4564.160 kb on + strand at 4564.160 kb on + strand at 4564.160 kb on + strand at 4564.160 kb on + strand at 4564.160 kb on + strand at 4564.160 kb on + strand at 4564.160 kb on + strand at 4564.160 kb on + strand at 4564.161 kb on - strand at 4564.161 kb on - strand at 4564.161 kb on - strand at 4564.161 kb on - strand at 4564.161 kb on - strand at 4564.161 kb on - strand at 4564.161 kb on - strand at 4564.161 kb on - strand at 4564.225 kb on + strand at 4564.252 kb on - strand at 4564.252 kb on - strand at 4564.252 kb on - strand at 4564.348 kb on + strand, within AO353_20845 at 4564.436 kb on + strand, within AO353_20845 at 4564.436 kb on + strand, within AO353_20845 at 4564.437 kb on - strand, within AO353_20845 at 4564.475 kb on + strand, within AO353_20845 at 4564.475 kb on + strand, within AO353_20845 at 4564.475 kb on + strand, within AO353_20845 at 4564.475 kb on + strand, within AO353_20845 at 4564.475 kb on + strand, within AO353_20845 at 4564.476 kb on - strand, within AO353_20845 at 4564.476 kb on - strand, within AO353_20845 at 4564.566 kb on - strand, within AO353_20845
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 4,561,793 - +3.7 4,561,793 - +4.8 4,561,882 + AO353_20830 0.13 +4.8 4,561,883 - AO353_20830 0.13 +4.7 4,561,883 - AO353_20830 0.13 +4.4 4,561,883 - AO353_20830 0.13 +4.4 4,561,932 + AO353_20830 0.18 +5.5 4,561,933 - AO353_20830 0.18 +4.3 4,561,933 - AO353_20830 0.18 +5.4 4,561,933 - AO353_20830 0.18 +6.1 4,561,990 - AO353_20830 0.24 +5.2 4,562,000 - AO353_20830 0.25 +4.7 4,562,000 - AO353_20830 0.25 +5.3 4,562,068 + AO353_20830 0.31 +4.4 4,562,068 + AO353_20830 0.31 +5.0 4,562,192 + AO353_20830 0.43 +3.2 4,562,216 + AO353_20830 0.46 +5.1 4,562,217 - AO353_20830 0.46 +4.6 4,562,234 - AO353_20830 0.47 +4.5 4,562,234 - AO353_20830 0.47 +3.3 4,562,242 + AO353_20830 0.48 +6.1 4,562,243 - AO353_20830 0.48 +4.9 4,562,243 - AO353_20830 0.48 +4.4 4,562,243 - AO353_20830 0.48 +4.8 4,562,243 - AO353_20830 0.48 +4.7 4,562,243 - AO353_20830 0.48 +5.2 4,562,243 - AO353_20830 0.48 +5.2 4,562,292 + AO353_20830 0.53 +4.8 4,562,292 + AO353_20830 0.53 +5.1 4,562,310 + AO353_20830 0.55 +5.3 4,562,310 + AO353_20830 0.55 +4.6 4,562,310 + AO353_20830 0.55 +4.4 4,562,310 + AO353_20830 0.55 +3.1 4,562,311 - AO353_20830 0.55 +4.1 4,562,311 - AO353_20830 0.55 +5.5 4,562,311 - AO353_20830 0.55 +4.9 4,562,311 - AO353_20830 0.55 +4.8 4,562,311 - AO353_20830 0.55 +2.9 4,562,311 - AO353_20830 0.55 +5.1 4,562,501 + AO353_20830 0.74 +5.1 4,562,584 + AO353_20830 0.82 +4.7 4,562,584 + AO353_20830 0.82 +4.7 4,562,584 + AO353_20830 0.82 +4.8 4,562,585 - AO353_20830 0.82 +4.8 4,562,585 - AO353_20830 0.82 +4.8 4,562,651 + AO353_20830 0.88 +5.2 4,562,652 - AO353_20830 0.88 +3.9 4,562,751 - +4.2 4,562,751 - +3.7 4,562,784 + +0.1 4,562,792 + +4.2 4,562,792 + +1.7 4,562,792 + +1.3 4,562,792 + -1.3 4,562,792 + +0.3 4,562,792 + +0.2 4,562,792 + +1.1 4,562,792 + +0.8 4,562,792 + -0.3 4,562,792 + +2.0 4,562,792 + +0.9 4,562,792 + +1.4 4,562,792 + +2.0 4,562,792 + +1.5 4,562,792 + +1.0 4,562,792 + +1.3 4,562,792 + +1.0 4,562,792 + +0.9 4,562,793 - +5.1 4,562,793 - +5.1 4,562,793 - +4.8 4,562,793 - +4.5 4,562,793 - +4.4 4,562,793 - +5.5 4,562,793 - +6.4 4,562,793 - +4.7 4,562,793 - +4.6 4,562,793 - +5.2 4,562,793 - +4.7 4,562,793 - +4.4 4,562,793 - +4.6 4,562,807 - +5.9 4,562,815 + +5.3 4,562,815 + +3.0 4,562,815 + +4.9 4,562,816 - +3.6 4,562,816 - +6.3 4,562,816 - +4.9 4,562,816 - +6.3 4,562,816 - +5.5 4,562,816 - +5.3 4,563,234 + AO353_20835 0.48 +4.5 4,563,234 + AO353_20835 0.48 +5.2 4,563,234 + AO353_20835 0.48 +5.5 4,563,235 - AO353_20835 0.48 +5.4 4,563,235 - AO353_20835 0.48 +4.5 4,563,235 - AO353_20835 0.48 +6.6 4,563,235 - AO353_20835 0.48 +5.1 4,563,235 - AO353_20835 0.48 +4.7 4,563,235 - AO353_20835 0.48 +5.4 4,563,333 + AO353_20835 0.59 +4.9 4,563,333 + AO353_20835 0.59 +5.2 4,563,333 + AO353_20835 0.59 +5.9 4,563,688 + +1.0 4,563,689 - +1.7 4,563,689 - +2.6 4,563,689 - +3.0 4,563,865 + AO353_20840 0.39 +2.0 4,563,865 + AO353_20840 0.39 +0.8 4,563,865 + AO353_20840 0.39 +1.7 4,564,018 + AO353_20840 0.77 +1.7 4,564,024 - AO353_20840 0.78 +2.4 4,564,024 - AO353_20840 0.78 +2.7 4,564,074 - +0.7 4,564,074 - +2.0 4,564,109 + +0.9 4,564,110 - -0.6 4,564,110 - -0.9 4,564,110 - +0.2 4,564,135 - -1.9 4,564,156 + +0.7 4,564,156 + +1.4 4,564,156 + +0.7 4,564,156 + -2.3 4,564,157 - +0.2 4,564,157 - -0.8 4,564,157 - -1.5 4,564,157 - -0.4 4,564,160 + +1.4 4,564,160 + -0.0 4,564,160 + -0.1 4,564,160 + +0.3 4,564,160 + -1.7 4,564,160 + +0.8 4,564,160 + +0.4 4,564,160 + -0.1 4,564,160 + +0.6 4,564,160 + +1.5 4,564,161 - +0.8 4,564,161 - +1.1 4,564,161 - +0.1 4,564,161 - -0.5 4,564,161 - -0.1 4,564,161 - -1.0 4,564,161 - +0.3 4,564,161 - -0.3 4,564,225 + -0.6 4,564,252 - -0.6 4,564,252 - +0.4 4,564,252 - +0.1 4,564,348 + AO353_20845 0.19 -0.6 4,564,436 + AO353_20845 0.27 +0.1 4,564,436 + AO353_20845 0.27 -0.9 4,564,437 - AO353_20845 0.27 -0.2 4,564,475 + AO353_20845 0.31 -0.7 4,564,475 + AO353_20845 0.31 +1.0 4,564,475 + AO353_20845 0.31 -1.6 4,564,475 + AO353_20845 0.31 +0.3 4,564,475 + AO353_20845 0.31 +0.6 4,564,476 - AO353_20845 0.31 +1.1 4,564,476 - AO353_20845 0.31 +0.8 4,564,566 - AO353_20845 0.40 +0.1
Or see this region's nucleotide sequence