Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_20820 and AO353_20825 overlap by 4 nucleotides AO353_20825 and AO353_20830 are separated by 3 nucleotides AO353_20830 and AO353_20835 are separated by 23 nucleotides AO353_20835 and AO353_20840 overlap by 4 nucleotides
AO353_20820: AO353_20820 - sugar ABC transporter ATP-binding protein, at 4,559,219 to 4,560,772
_20820
AO353_20825: AO353_20825 - ABC transporter permease, at 4,560,769 to 4,561,746
_20825
AO353_20830: AO353_20830 - LacI family transcriptional regulator, at 4,561,750 to 4,562,769
_20830
AO353_20835: AO353_20835 - Ribokinase (EC 2.7.1.15) (from data) , at 4,562,793 to 4,563,710
_20835
AO353_20840: AO353_20840 - ribose pyranase, at 4,563,707 to 4,564,111
_20840
Position (kb)
4561
4562
4563 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6 at 4560.773 kb on + strand at 4560.773 kb on + strand at 4560.773 kb on + strand at 4560.774 kb on - strand at 4560.774 kb on - strand at 4560.798 kb on + strand at 4560.798 kb on + strand at 4560.798 kb on + strand at 4560.798 kb on + strand at 4560.798 kb on + strand at 4560.798 kb on + strand at 4560.798 kb on + strand at 4560.798 kb on + strand at 4560.799 kb on - strand at 4560.799 kb on - strand at 4560.799 kb on - strand at 4560.799 kb on - strand at 4560.799 kb on - strand at 4560.799 kb on - strand at 4560.801 kb on + strand at 4560.801 kb on + strand at 4560.801 kb on + strand at 4560.801 kb on + strand at 4560.802 kb on - strand at 4560.802 kb on - strand at 4560.826 kb on + strand at 4560.826 kb on + strand at 4560.826 kb on + strand at 4560.826 kb on + strand at 4560.826 kb on + strand at 4560.826 kb on + strand at 4560.826 kb on + strand at 4560.826 kb on + strand at 4560.826 kb on + strand at 4560.827 kb on - strand at 4560.827 kb on - strand at 4560.827 kb on - strand at 4560.827 kb on - strand at 4560.898 kb on + strand, within AO353_20825 at 4560.898 kb on + strand, within AO353_20825 at 4560.898 kb on + strand, within AO353_20825 at 4560.898 kb on + strand, within AO353_20825 at 4560.899 kb on - strand, within AO353_20825 at 4560.899 kb on - strand, within AO353_20825 at 4560.899 kb on - strand, within AO353_20825 at 4560.899 kb on - strand, within AO353_20825 at 4560.899 kb on - strand, within AO353_20825 at 4560.899 kb on - strand, within AO353_20825 at 4560.899 kb on - strand, within AO353_20825 at 4560.899 kb on - strand, within AO353_20825 at 4561.225 kb on + strand, within AO353_20825 at 4561.225 kb on + strand, within AO353_20825 at 4561.225 kb on + strand, within AO353_20825 at 4561.225 kb on + strand at 4561.225 kb on + strand, within AO353_20825 at 4561.225 kb on + strand, within AO353_20825 at 4561.225 kb on + strand, within AO353_20825 at 4561.226 kb on - strand, within AO353_20825 at 4561.226 kb on - strand, within AO353_20825 at 4561.226 kb on - strand, within AO353_20825 at 4561.226 kb on - strand, within AO353_20825 at 4561.226 kb on - strand, within AO353_20825 at 4561.226 kb on - strand, within AO353_20825 at 4561.226 kb on - strand, within AO353_20825 at 4561.272 kb on + strand, within AO353_20825 at 4561.272 kb on + strand, within AO353_20825 at 4561.273 kb on - strand, within AO353_20825 at 4561.273 kb on - strand, within AO353_20825 at 4561.305 kb on + strand, within AO353_20825 at 4561.306 kb on - strand, within AO353_20825 at 4561.415 kb on - strand, within AO353_20825 at 4561.523 kb on + strand, within AO353_20825 at 4561.523 kb on + strand, within AO353_20825 at 4561.524 kb on - strand, within AO353_20825 at 4561.524 kb on - strand, within AO353_20825 at 4561.714 kb on + strand at 4561.715 kb on - strand at 4561.715 kb on - strand at 4561.769 kb on + strand at 4561.769 kb on + strand at 4561.769 kb on + strand at 4561.769 kb on + strand at 4561.769 kb on + strand at 4561.769 kb on + strand at 4561.769 kb on + strand at 4561.769 kb on + strand at 4561.770 kb on - strand at 4561.770 kb on - strand at 4561.770 kb on - strand at 4561.770 kb on - strand at 4561.770 kb on - strand at 4561.770 kb on - strand at 4561.770 kb on - strand at 4561.770 kb on - strand at 4561.770 kb on - strand at 4561.770 kb on - strand at 4561.792 kb on + strand at 4561.792 kb on + strand at 4561.792 kb on + strand at 4561.793 kb on - strand at 4561.793 kb on - strand at 4561.882 kb on + strand, within AO353_20830 at 4561.883 kb on - strand, within AO353_20830 at 4561.883 kb on - strand, within AO353_20830 at 4561.883 kb on - strand, within AO353_20830 at 4561.932 kb on + strand, within AO353_20830 at 4561.933 kb on - strand, within AO353_20830 at 4561.933 kb on - strand, within AO353_20830 at 4561.933 kb on - strand, within AO353_20830 at 4561.990 kb on - strand, within AO353_20830 at 4562.000 kb on - strand, within AO353_20830 at 4562.000 kb on - strand, within AO353_20830 at 4562.068 kb on + strand, within AO353_20830 at 4562.068 kb on + strand, within AO353_20830 at 4562.192 kb on + strand, within AO353_20830 at 4562.216 kb on + strand, within AO353_20830 at 4562.217 kb on - strand, within AO353_20830 at 4562.234 kb on - strand, within AO353_20830 at 4562.234 kb on - strand, within AO353_20830 at 4562.242 kb on + strand, within AO353_20830 at 4562.243 kb on - strand, within AO353_20830 at 4562.243 kb on - strand, within AO353_20830 at 4562.243 kb on - strand, within AO353_20830 at 4562.243 kb on - strand, within AO353_20830 at 4562.243 kb on - strand, within AO353_20830 at 4562.243 kb on - strand, within AO353_20830 at 4562.292 kb on + strand, within AO353_20830 at 4562.292 kb on + strand, within AO353_20830 at 4562.310 kb on + strand, within AO353_20830 at 4562.310 kb on + strand, within AO353_20830 at 4562.310 kb on + strand, within AO353_20830 at 4562.310 kb on + strand, within AO353_20830 at 4562.311 kb on - strand, within AO353_20830 at 4562.311 kb on - strand, within AO353_20830 at 4562.311 kb on - strand, within AO353_20830 at 4562.311 kb on - strand, within AO353_20830 at 4562.311 kb on - strand, within AO353_20830 at 4562.311 kb on - strand, within AO353_20830 at 4562.501 kb on + strand, within AO353_20830 at 4562.584 kb on + strand, within AO353_20830 at 4562.584 kb on + strand, within AO353_20830 at 4562.584 kb on + strand, within AO353_20830 at 4562.585 kb on - strand, within AO353_20830 at 4562.585 kb on - strand, within AO353_20830 at 4562.651 kb on + strand, within AO353_20830 at 4562.652 kb on - strand, within AO353_20830 at 4562.751 kb on - strand at 4562.751 kb on - strand at 4562.784 kb on + strand at 4562.792 kb on + strand at 4562.792 kb on + strand at 4562.792 kb on + strand at 4562.792 kb on + strand at 4562.792 kb on + strand at 4562.792 kb on + strand at 4562.792 kb on + strand at 4562.792 kb on + strand at 4562.792 kb on + strand at 4562.792 kb on + strand at 4562.792 kb on + strand at 4562.792 kb on + strand at 4562.792 kb on + strand at 4562.792 kb on + strand at 4562.792 kb on + strand at 4562.792 kb on + strand at 4562.792 kb on + strand at 4562.792 kb on + strand at 4562.793 kb on - strand at 4562.793 kb on - strand at 4562.793 kb on - strand at 4562.793 kb on - strand at 4562.793 kb on - strand at 4562.793 kb on - strand at 4562.793 kb on - strand at 4562.793 kb on - strand at 4562.793 kb on - strand at 4562.793 kb on - strand at 4562.793 kb on - strand at 4562.793 kb on - strand at 4562.793 kb on - strand at 4562.807 kb on - strand at 4562.815 kb on + strand at 4562.815 kb on + strand at 4562.815 kb on + strand at 4562.816 kb on - strand at 4562.816 kb on - strand at 4562.816 kb on - strand at 4562.816 kb on - strand at 4562.816 kb on - strand at 4562.816 kb on - strand at 4563.234 kb on + strand, within AO353_20835 at 4563.234 kb on + strand, within AO353_20835 at 4563.234 kb on + strand, within AO353_20835 at 4563.235 kb on - strand, within AO353_20835 at 4563.235 kb on - strand, within AO353_20835 at 4563.235 kb on - strand, within AO353_20835 at 4563.235 kb on - strand, within AO353_20835 at 4563.235 kb on - strand, within AO353_20835 at 4563.235 kb on - strand, within AO353_20835 at 4563.333 kb on + strand, within AO353_20835 at 4563.333 kb on + strand, within AO353_20835 at 4563.333 kb on + strand, within AO353_20835 at 4563.688 kb on + strand at 4563.689 kb on - strand at 4563.689 kb on - strand at 4563.689 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 4,560,773 + +0.1 4,560,773 + -1.0 4,560,773 + -0.6 4,560,774 - +2.1 4,560,774 - +2.8 4,560,798 + -0.9 4,560,798 + -1.3 4,560,798 + -0.4 4,560,798 + -0.3 4,560,798 + -0.8 4,560,798 + -1.0 4,560,798 + -0.2 4,560,798 + -0.6 4,560,799 - +3.1 4,560,799 - +3.5 4,560,799 - +2.4 4,560,799 - +2.7 4,560,799 - +3.6 4,560,799 - +4.2 4,560,801 + -0.6 4,560,801 + +0.4 4,560,801 + -1.1 4,560,801 + -1.2 4,560,802 - +2.7 4,560,802 - +2.6 4,560,826 + -0.6 4,560,826 + -2.0 4,560,826 + -0.7 4,560,826 + -0.7 4,560,826 + -1.6 4,560,826 + -0.3 4,560,826 + -1.7 4,560,826 + -2.2 4,560,826 + -1.1 4,560,827 - +2.8 4,560,827 - +0.6 4,560,827 - +3.6 4,560,827 - +3.8 4,560,898 + AO353_20825 0.13 +1.0 4,560,898 + AO353_20825 0.13 -1.7 4,560,898 + AO353_20825 0.13 -1.1 4,560,898 + AO353_20825 0.13 -0.6 4,560,899 - AO353_20825 0.13 +3.2 4,560,899 - AO353_20825 0.13 +3.2 4,560,899 - AO353_20825 0.13 +3.1 4,560,899 - AO353_20825 0.13 +2.2 4,560,899 - AO353_20825 0.13 +3.2 4,560,899 - AO353_20825 0.13 +3.5 4,560,899 - AO353_20825 0.13 +4.6 4,560,899 - AO353_20825 0.13 +3.7 4,561,225 + AO353_20825 0.47 -1.7 4,561,225 + AO353_20825 0.47 -0.4 4,561,225 + AO353_20825 0.47 -0.8 4,561,225 + +0.8 4,561,225 + AO353_20825 0.47 -2.2 4,561,225 + AO353_20825 0.47 -0.6 4,561,225 + AO353_20825 0.47 -1.4 4,561,226 - AO353_20825 0.47 +3.6 4,561,226 - AO353_20825 0.47 +2.5 4,561,226 - AO353_20825 0.47 +3.6 4,561,226 - AO353_20825 0.47 +4.4 4,561,226 - AO353_20825 0.47 +2.7 4,561,226 - AO353_20825 0.47 +3.8 4,561,226 - AO353_20825 0.47 +4.5 4,561,272 + AO353_20825 0.51 -0.1 4,561,272 + AO353_20825 0.51 -0.9 4,561,273 - AO353_20825 0.52 +4.1 4,561,273 - AO353_20825 0.52 +3.8 4,561,305 + AO353_20825 0.55 -1.0 4,561,306 - AO353_20825 0.55 +4.8 4,561,415 - AO353_20825 0.66 +3.0 4,561,523 + AO353_20825 0.77 -0.5 4,561,523 + AO353_20825 0.77 -0.8 4,561,524 - AO353_20825 0.77 +5.6 4,561,524 - AO353_20825 0.77 +2.3 4,561,714 + +0.7 4,561,715 - +4.0 4,561,715 - +4.8 4,561,769 + +2.8 4,561,769 + +5.2 4,561,769 + +5.5 4,561,769 + +5.0 4,561,769 + +3.0 4,561,769 + +5.1 4,561,769 + +4.6 4,561,769 + +5.1 4,561,770 - +4.3 4,561,770 - +3.5 4,561,770 - +4.7 4,561,770 - +4.2 4,561,770 - +5.5 4,561,770 - +3.0 4,561,770 - +4.9 4,561,770 - +5.0 4,561,770 - +5.0 4,561,770 - +2.5 4,561,792 + +5.2 4,561,792 + +4.8 4,561,792 + +5.7 4,561,793 - +3.7 4,561,793 - +4.8 4,561,882 + AO353_20830 0.13 +4.8 4,561,883 - AO353_20830 0.13 +4.7 4,561,883 - AO353_20830 0.13 +4.4 4,561,883 - AO353_20830 0.13 +4.4 4,561,932 + AO353_20830 0.18 +5.5 4,561,933 - AO353_20830 0.18 +4.3 4,561,933 - AO353_20830 0.18 +5.4 4,561,933 - AO353_20830 0.18 +6.1 4,561,990 - AO353_20830 0.24 +5.2 4,562,000 - AO353_20830 0.25 +4.7 4,562,000 - AO353_20830 0.25 +5.3 4,562,068 + AO353_20830 0.31 +4.4 4,562,068 + AO353_20830 0.31 +5.0 4,562,192 + AO353_20830 0.43 +3.2 4,562,216 + AO353_20830 0.46 +5.1 4,562,217 - AO353_20830 0.46 +4.6 4,562,234 - AO353_20830 0.47 +4.5 4,562,234 - AO353_20830 0.47 +3.3 4,562,242 + AO353_20830 0.48 +6.1 4,562,243 - AO353_20830 0.48 +4.9 4,562,243 - AO353_20830 0.48 +4.4 4,562,243 - AO353_20830 0.48 +4.8 4,562,243 - AO353_20830 0.48 +4.7 4,562,243 - AO353_20830 0.48 +5.2 4,562,243 - AO353_20830 0.48 +5.2 4,562,292 + AO353_20830 0.53 +4.8 4,562,292 + AO353_20830 0.53 +5.1 4,562,310 + AO353_20830 0.55 +5.3 4,562,310 + AO353_20830 0.55 +4.6 4,562,310 + AO353_20830 0.55 +4.4 4,562,310 + AO353_20830 0.55 +3.1 4,562,311 - AO353_20830 0.55 +4.1 4,562,311 - AO353_20830 0.55 +5.5 4,562,311 - AO353_20830 0.55 +4.9 4,562,311 - AO353_20830 0.55 +4.8 4,562,311 - AO353_20830 0.55 +2.9 4,562,311 - AO353_20830 0.55 +5.1 4,562,501 + AO353_20830 0.74 +5.1 4,562,584 + AO353_20830 0.82 +4.7 4,562,584 + AO353_20830 0.82 +4.7 4,562,584 + AO353_20830 0.82 +4.8 4,562,585 - AO353_20830 0.82 +4.8 4,562,585 - AO353_20830 0.82 +4.8 4,562,651 + AO353_20830 0.88 +5.2 4,562,652 - AO353_20830 0.88 +3.9 4,562,751 - +4.2 4,562,751 - +3.7 4,562,784 + +0.1 4,562,792 + +4.2 4,562,792 + +1.7 4,562,792 + +1.3 4,562,792 + -1.3 4,562,792 + +0.3 4,562,792 + +0.2 4,562,792 + +1.1 4,562,792 + +0.8 4,562,792 + -0.3 4,562,792 + +2.0 4,562,792 + +0.9 4,562,792 + +1.4 4,562,792 + +2.0 4,562,792 + +1.5 4,562,792 + +1.0 4,562,792 + +1.3 4,562,792 + +1.0 4,562,792 + +0.9 4,562,793 - +5.1 4,562,793 - +5.1 4,562,793 - +4.8 4,562,793 - +4.5 4,562,793 - +4.4 4,562,793 - +5.5 4,562,793 - +6.4 4,562,793 - +4.7 4,562,793 - +4.6 4,562,793 - +5.2 4,562,793 - +4.7 4,562,793 - +4.4 4,562,793 - +4.6 4,562,807 - +5.9 4,562,815 + +5.3 4,562,815 + +3.0 4,562,815 + +4.9 4,562,816 - +3.6 4,562,816 - +6.3 4,562,816 - +4.9 4,562,816 - +6.3 4,562,816 - +5.5 4,562,816 - +5.3 4,563,234 + AO353_20835 0.48 +4.5 4,563,234 + AO353_20835 0.48 +5.2 4,563,234 + AO353_20835 0.48 +5.5 4,563,235 - AO353_20835 0.48 +5.4 4,563,235 - AO353_20835 0.48 +4.5 4,563,235 - AO353_20835 0.48 +6.6 4,563,235 - AO353_20835 0.48 +5.1 4,563,235 - AO353_20835 0.48 +4.7 4,563,235 - AO353_20835 0.48 +5.4 4,563,333 + AO353_20835 0.59 +4.9 4,563,333 + AO353_20835 0.59 +5.2 4,563,333 + AO353_20835 0.59 +5.9 4,563,688 + +1.0 4,563,689 - +1.7 4,563,689 - +2.6 4,563,689 - +3.0
Or see this region's nucleotide sequence