Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_20830

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_20820 and AO353_20825 overlap by 4 nucleotidesAO353_20825 and AO353_20830 are separated by 3 nucleotidesAO353_20830 and AO353_20835 are separated by 23 nucleotidesAO353_20835 and AO353_20840 overlap by 4 nucleotides AO353_20820: AO353_20820 - sugar ABC transporter ATP-binding protein, at 4,559,219 to 4,560,772 _20820 AO353_20825: AO353_20825 - ABC transporter permease, at 4,560,769 to 4,561,746 _20825 AO353_20830: AO353_20830 - LacI family transcriptional regulator, at 4,561,750 to 4,562,769 _20830 AO353_20835: AO353_20835 - Ribokinase (EC 2.7.1.15) (from data), at 4,562,793 to 4,563,710 _20835 AO353_20840: AO353_20840 - ribose pyranase, at 4,563,707 to 4,564,111 _20840 Position (kb) 4561 4562 4563Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 4560.773 kb on + strandat 4560.773 kb on + strandat 4560.773 kb on + strandat 4560.774 kb on - strandat 4560.774 kb on - strandat 4560.798 kb on + strandat 4560.798 kb on + strandat 4560.798 kb on + strandat 4560.798 kb on + strandat 4560.798 kb on + strandat 4560.798 kb on + strandat 4560.798 kb on + strandat 4560.798 kb on + strandat 4560.799 kb on - strandat 4560.799 kb on - strandat 4560.799 kb on - strandat 4560.799 kb on - strandat 4560.799 kb on - strandat 4560.799 kb on - strandat 4560.801 kb on + strandat 4560.801 kb on + strandat 4560.801 kb on + strandat 4560.801 kb on + strandat 4560.802 kb on - strandat 4560.802 kb on - strandat 4560.826 kb on + strandat 4560.826 kb on + strandat 4560.826 kb on + strandat 4560.826 kb on + strandat 4560.826 kb on + strandat 4560.826 kb on + strandat 4560.826 kb on + strandat 4560.826 kb on + strandat 4560.826 kb on + strandat 4560.827 kb on - strandat 4560.827 kb on - strandat 4560.827 kb on - strandat 4560.827 kb on - strandat 4560.898 kb on + strand, within AO353_20825at 4560.898 kb on + strand, within AO353_20825at 4560.898 kb on + strand, within AO353_20825at 4560.898 kb on + strand, within AO353_20825at 4560.899 kb on - strand, within AO353_20825at 4560.899 kb on - strand, within AO353_20825at 4560.899 kb on - strand, within AO353_20825at 4560.899 kb on - strand, within AO353_20825at 4560.899 kb on - strand, within AO353_20825at 4560.899 kb on - strand, within AO353_20825at 4560.899 kb on - strand, within AO353_20825at 4560.899 kb on - strand, within AO353_20825at 4561.225 kb on + strand, within AO353_20825at 4561.225 kb on + strand, within AO353_20825at 4561.225 kb on + strand, within AO353_20825at 4561.225 kb on + strandat 4561.225 kb on + strand, within AO353_20825at 4561.225 kb on + strand, within AO353_20825at 4561.225 kb on + strand, within AO353_20825at 4561.226 kb on - strand, within AO353_20825at 4561.226 kb on - strand, within AO353_20825at 4561.226 kb on - strand, within AO353_20825at 4561.226 kb on - strand, within AO353_20825at 4561.226 kb on - strand, within AO353_20825at 4561.226 kb on - strand, within AO353_20825at 4561.226 kb on - strand, within AO353_20825at 4561.272 kb on + strand, within AO353_20825at 4561.272 kb on + strand, within AO353_20825at 4561.273 kb on - strand, within AO353_20825at 4561.273 kb on - strand, within AO353_20825at 4561.305 kb on + strand, within AO353_20825at 4561.306 kb on - strand, within AO353_20825at 4561.415 kb on - strand, within AO353_20825at 4561.523 kb on + strand, within AO353_20825at 4561.523 kb on + strand, within AO353_20825at 4561.524 kb on - strand, within AO353_20825at 4561.524 kb on - strand, within AO353_20825at 4561.714 kb on + strandat 4561.715 kb on - strandat 4561.715 kb on - strandat 4561.769 kb on + strandat 4561.769 kb on + strandat 4561.769 kb on + strandat 4561.769 kb on + strandat 4561.769 kb on + strandat 4561.769 kb on + strandat 4561.769 kb on + strandat 4561.769 kb on + strandat 4561.770 kb on - strandat 4561.770 kb on - strandat 4561.770 kb on - strandat 4561.770 kb on - strandat 4561.770 kb on - strandat 4561.770 kb on - strandat 4561.770 kb on - strandat 4561.770 kb on - strandat 4561.770 kb on - strandat 4561.770 kb on - strandat 4561.792 kb on + strandat 4561.792 kb on + strandat 4561.792 kb on + strandat 4561.793 kb on - strandat 4561.793 kb on - strandat 4561.882 kb on + strand, within AO353_20830at 4561.883 kb on - strand, within AO353_20830at 4561.883 kb on - strand, within AO353_20830at 4561.883 kb on - strand, within AO353_20830at 4561.932 kb on + strand, within AO353_20830at 4561.933 kb on - strand, within AO353_20830at 4561.933 kb on - strand, within AO353_20830at 4561.933 kb on - strand, within AO353_20830at 4561.990 kb on - strand, within AO353_20830at 4562.000 kb on - strand, within AO353_20830at 4562.000 kb on - strand, within AO353_20830at 4562.068 kb on + strand, within AO353_20830at 4562.068 kb on + strand, within AO353_20830at 4562.192 kb on + strand, within AO353_20830at 4562.216 kb on + strand, within AO353_20830at 4562.217 kb on - strand, within AO353_20830at 4562.234 kb on - strand, within AO353_20830at 4562.234 kb on - strand, within AO353_20830at 4562.242 kb on + strand, within AO353_20830at 4562.243 kb on - strand, within AO353_20830at 4562.243 kb on - strand, within AO353_20830at 4562.243 kb on - strand, within AO353_20830at 4562.243 kb on - strand, within AO353_20830at 4562.243 kb on - strand, within AO353_20830at 4562.243 kb on - strand, within AO353_20830at 4562.292 kb on + strand, within AO353_20830at 4562.292 kb on + strand, within AO353_20830at 4562.310 kb on + strand, within AO353_20830at 4562.310 kb on + strand, within AO353_20830at 4562.310 kb on + strand, within AO353_20830at 4562.310 kb on + strand, within AO353_20830at 4562.311 kb on - strand, within AO353_20830at 4562.311 kb on - strand, within AO353_20830at 4562.311 kb on - strand, within AO353_20830at 4562.311 kb on - strand, within AO353_20830at 4562.311 kb on - strand, within AO353_20830at 4562.311 kb on - strand, within AO353_20830at 4562.501 kb on + strand, within AO353_20830at 4562.584 kb on + strand, within AO353_20830at 4562.584 kb on + strand, within AO353_20830at 4562.584 kb on + strand, within AO353_20830at 4562.585 kb on - strand, within AO353_20830at 4562.585 kb on - strand, within AO353_20830at 4562.651 kb on + strand, within AO353_20830at 4562.652 kb on - strand, within AO353_20830at 4562.751 kb on - strandat 4562.751 kb on - strandat 4562.784 kb on + strandat 4562.792 kb on + strandat 4562.792 kb on + strandat 4562.792 kb on + strandat 4562.792 kb on + strandat 4562.792 kb on + strandat 4562.792 kb on + strandat 4562.792 kb on + strandat 4562.792 kb on + strandat 4562.792 kb on + strandat 4562.792 kb on + strandat 4562.792 kb on + strandat 4562.792 kb on + strandat 4562.792 kb on + strandat 4562.792 kb on + strandat 4562.792 kb on + strandat 4562.792 kb on + strandat 4562.792 kb on + strandat 4562.792 kb on + strandat 4562.793 kb on - strandat 4562.793 kb on - strandat 4562.793 kb on - strandat 4562.793 kb on - strandat 4562.793 kb on - strandat 4562.793 kb on - strandat 4562.793 kb on - strandat 4562.793 kb on - strandat 4562.793 kb on - strandat 4562.793 kb on - strandat 4562.793 kb on - strandat 4562.793 kb on - strandat 4562.793 kb on - strandat 4562.807 kb on - strandat 4562.815 kb on + strandat 4562.815 kb on + strandat 4562.815 kb on + strandat 4562.816 kb on - strandat 4562.816 kb on - strandat 4562.816 kb on - strandat 4562.816 kb on - strandat 4562.816 kb on - strandat 4562.816 kb on - strandat 4563.234 kb on + strand, within AO353_20835at 4563.234 kb on + strand, within AO353_20835at 4563.234 kb on + strand, within AO353_20835at 4563.235 kb on - strand, within AO353_20835at 4563.235 kb on - strand, within AO353_20835at 4563.235 kb on - strand, within AO353_20835at 4563.235 kb on - strand, within AO353_20835at 4563.235 kb on - strand, within AO353_20835at 4563.235 kb on - strand, within AO353_20835at 4563.333 kb on + strand, within AO353_20835at 4563.333 kb on + strand, within AO353_20835at 4563.333 kb on + strand, within AO353_20835at 4563.688 kb on + strandat 4563.689 kb on - strandat 4563.689 kb on - strandat 4563.689 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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4,560,773 + +0.1
4,560,773 + -1.0
4,560,773 + -0.6
4,560,774 - +2.1
4,560,774 - +2.8
4,560,798 + -0.9
4,560,798 + -1.3
4,560,798 + -0.4
4,560,798 + -0.3
4,560,798 + -0.8
4,560,798 + -1.0
4,560,798 + -0.2
4,560,798 + -0.6
4,560,799 - +3.1
4,560,799 - +3.5
4,560,799 - +2.4
4,560,799 - +2.7
4,560,799 - +3.6
4,560,799 - +4.2
4,560,801 + -0.6
4,560,801 + +0.4
4,560,801 + -1.1
4,560,801 + -1.2
4,560,802 - +2.7
4,560,802 - +2.6
4,560,826 + -0.6
4,560,826 + -2.0
4,560,826 + -0.7
4,560,826 + -0.7
4,560,826 + -1.6
4,560,826 + -0.3
4,560,826 + -1.7
4,560,826 + -2.2
4,560,826 + -1.1
4,560,827 - +2.8
4,560,827 - +0.6
4,560,827 - +3.6
4,560,827 - +3.8
4,560,898 + AO353_20825 0.13 +1.0
4,560,898 + AO353_20825 0.13 -1.7
4,560,898 + AO353_20825 0.13 -1.1
4,560,898 + AO353_20825 0.13 -0.6
4,560,899 - AO353_20825 0.13 +3.2
4,560,899 - AO353_20825 0.13 +3.2
4,560,899 - AO353_20825 0.13 +3.1
4,560,899 - AO353_20825 0.13 +2.2
4,560,899 - AO353_20825 0.13 +3.2
4,560,899 - AO353_20825 0.13 +3.5
4,560,899 - AO353_20825 0.13 +4.6
4,560,899 - AO353_20825 0.13 +3.7
4,561,225 + AO353_20825 0.47 -1.7
4,561,225 + AO353_20825 0.47 -0.4
4,561,225 + AO353_20825 0.47 -0.8
4,561,225 + +0.8
4,561,225 + AO353_20825 0.47 -2.2
4,561,225 + AO353_20825 0.47 -0.6
4,561,225 + AO353_20825 0.47 -1.4
4,561,226 - AO353_20825 0.47 +3.6
4,561,226 - AO353_20825 0.47 +2.5
4,561,226 - AO353_20825 0.47 +3.6
4,561,226 - AO353_20825 0.47 +4.4
4,561,226 - AO353_20825 0.47 +2.7
4,561,226 - AO353_20825 0.47 +3.8
4,561,226 - AO353_20825 0.47 +4.5
4,561,272 + AO353_20825 0.51 -0.1
4,561,272 + AO353_20825 0.51 -0.9
4,561,273 - AO353_20825 0.52 +4.1
4,561,273 - AO353_20825 0.52 +3.8
4,561,305 + AO353_20825 0.55 -1.0
4,561,306 - AO353_20825 0.55 +4.8
4,561,415 - AO353_20825 0.66 +3.0
4,561,523 + AO353_20825 0.77 -0.5
4,561,523 + AO353_20825 0.77 -0.8
4,561,524 - AO353_20825 0.77 +5.6
4,561,524 - AO353_20825 0.77 +2.3
4,561,714 + +0.7
4,561,715 - +4.0
4,561,715 - +4.8
4,561,769 + +2.8
4,561,769 + +5.2
4,561,769 + +5.5
4,561,769 + +5.0
4,561,769 + +3.0
4,561,769 + +5.1
4,561,769 + +4.6
4,561,769 + +5.1
4,561,770 - +4.3
4,561,770 - +3.5
4,561,770 - +4.7
4,561,770 - +4.2
4,561,770 - +5.5
4,561,770 - +3.0
4,561,770 - +4.9
4,561,770 - +5.0
4,561,770 - +5.0
4,561,770 - +2.5
4,561,792 + +5.2
4,561,792 + +4.8
4,561,792 + +5.7
4,561,793 - +3.7
4,561,793 - +4.8
4,561,882 + AO353_20830 0.13 +4.8
4,561,883 - AO353_20830 0.13 +4.7
4,561,883 - AO353_20830 0.13 +4.4
4,561,883 - AO353_20830 0.13 +4.4
4,561,932 + AO353_20830 0.18 +5.5
4,561,933 - AO353_20830 0.18 +4.3
4,561,933 - AO353_20830 0.18 +5.4
4,561,933 - AO353_20830 0.18 +6.1
4,561,990 - AO353_20830 0.24 +5.2
4,562,000 - AO353_20830 0.25 +4.7
4,562,000 - AO353_20830 0.25 +5.3
4,562,068 + AO353_20830 0.31 +4.4
4,562,068 + AO353_20830 0.31 +5.0
4,562,192 + AO353_20830 0.43 +3.2
4,562,216 + AO353_20830 0.46 +5.1
4,562,217 - AO353_20830 0.46 +4.6
4,562,234 - AO353_20830 0.47 +4.5
4,562,234 - AO353_20830 0.47 +3.3
4,562,242 + AO353_20830 0.48 +6.1
4,562,243 - AO353_20830 0.48 +4.9
4,562,243 - AO353_20830 0.48 +4.4
4,562,243 - AO353_20830 0.48 +4.8
4,562,243 - AO353_20830 0.48 +4.7
4,562,243 - AO353_20830 0.48 +5.2
4,562,243 - AO353_20830 0.48 +5.2
4,562,292 + AO353_20830 0.53 +4.8
4,562,292 + AO353_20830 0.53 +5.1
4,562,310 + AO353_20830 0.55 +5.3
4,562,310 + AO353_20830 0.55 +4.6
4,562,310 + AO353_20830 0.55 +4.4
4,562,310 + AO353_20830 0.55 +3.1
4,562,311 - AO353_20830 0.55 +4.1
4,562,311 - AO353_20830 0.55 +5.5
4,562,311 - AO353_20830 0.55 +4.9
4,562,311 - AO353_20830 0.55 +4.8
4,562,311 - AO353_20830 0.55 +2.9
4,562,311 - AO353_20830 0.55 +5.1
4,562,501 + AO353_20830 0.74 +5.1
4,562,584 + AO353_20830 0.82 +4.7
4,562,584 + AO353_20830 0.82 +4.7
4,562,584 + AO353_20830 0.82 +4.8
4,562,585 - AO353_20830 0.82 +4.8
4,562,585 - AO353_20830 0.82 +4.8
4,562,651 + AO353_20830 0.88 +5.2
4,562,652 - AO353_20830 0.88 +3.9
4,562,751 - +4.2
4,562,751 - +3.7
4,562,784 + +0.1
4,562,792 + +4.2
4,562,792 + +1.7
4,562,792 + +1.3
4,562,792 + -1.3
4,562,792 + +0.3
4,562,792 + +0.2
4,562,792 + +1.1
4,562,792 + +0.8
4,562,792 + -0.3
4,562,792 + +2.0
4,562,792 + +0.9
4,562,792 + +1.4
4,562,792 + +2.0
4,562,792 + +1.5
4,562,792 + +1.0
4,562,792 + +1.3
4,562,792 + +1.0
4,562,792 + +0.9
4,562,793 - +5.1
4,562,793 - +5.1
4,562,793 - +4.8
4,562,793 - +4.5
4,562,793 - +4.4
4,562,793 - +5.5
4,562,793 - +6.4
4,562,793 - +4.7
4,562,793 - +4.6
4,562,793 - +5.2
4,562,793 - +4.7
4,562,793 - +4.4
4,562,793 - +4.6
4,562,807 - +5.9
4,562,815 + +5.3
4,562,815 + +3.0
4,562,815 + +4.9
4,562,816 - +3.6
4,562,816 - +6.3
4,562,816 - +4.9
4,562,816 - +6.3
4,562,816 - +5.5
4,562,816 - +5.3
4,563,234 + AO353_20835 0.48 +4.5
4,563,234 + AO353_20835 0.48 +5.2
4,563,234 + AO353_20835 0.48 +5.5
4,563,235 - AO353_20835 0.48 +5.4
4,563,235 - AO353_20835 0.48 +4.5
4,563,235 - AO353_20835 0.48 +6.6
4,563,235 - AO353_20835 0.48 +5.1
4,563,235 - AO353_20835 0.48 +4.7
4,563,235 - AO353_20835 0.48 +5.4
4,563,333 + AO353_20835 0.59 +4.9
4,563,333 + AO353_20835 0.59 +5.2
4,563,333 + AO353_20835 0.59 +5.9
4,563,688 + +1.0
4,563,689 - +1.7
4,563,689 - +2.6
4,563,689 - +3.0

Or see this region's nucleotide sequence