Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_20810

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_20805 and AO353_20810 are separated by 351 nucleotidesAO353_20810 and AO353_20815 are separated by 235 nucleotides AO353_20805: AO353_20805 - glutaminase, at 4,556,077 to 4,557,165 _20805 AO353_20810: AO353_20810 - hypothetical protein, at 4,557,517 to 4,557,972 _20810 AO353_20815: AO353_20815 - LacI family transcriptional regulator, at 4,558,208 to 4,559,161 _20815 Position (kb) 4557 4558Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4556.646 kb on + strand, within AO353_20805at 4556.669 kb on + strand, within AO353_20805at 4556.669 kb on + strand, within AO353_20805at 4556.669 kb on + strand, within AO353_20805at 4556.768 kb on + strand, within AO353_20805at 4556.768 kb on + strand, within AO353_20805at 4556.768 kb on + strand, within AO353_20805at 4556.768 kb on + strand, within AO353_20805at 4556.769 kb on - strand, within AO353_20805at 4556.769 kb on - strand, within AO353_20805at 4556.802 kb on + strand, within AO353_20805at 4556.802 kb on + strand, within AO353_20805at 4556.802 kb on + strand, within AO353_20805at 4556.802 kb on + strand, within AO353_20805at 4556.802 kb on + strand, within AO353_20805at 4556.803 kb on - strand, within AO353_20805at 4556.990 kb on + strand, within AO353_20805at 4556.990 kb on + strand, within AO353_20805at 4556.991 kb on - strand, within AO353_20805at 4556.991 kb on - strand, within AO353_20805at 4556.994 kb on + strand, within AO353_20805at 4556.994 kb on + strand, within AO353_20805at 4556.994 kb on + strand, within AO353_20805at 4556.994 kb on + strand, within AO353_20805at 4556.994 kb on + strand, within AO353_20805at 4556.994 kb on + strand, within AO353_20805at 4556.994 kb on + strand, within AO353_20805at 4556.994 kb on + strand, within AO353_20805at 4556.994 kb on + strand, within AO353_20805at 4556.994 kb on + strand, within AO353_20805at 4556.994 kb on + strand, within AO353_20805at 4556.995 kb on - strandat 4556.995 kb on - strand, within AO353_20805at 4556.995 kb on - strand, within AO353_20805at 4556.995 kb on - strand, within AO353_20805at 4557.000 kb on + strand, within AO353_20805at 4557.000 kb on + strand, within AO353_20805at 4557.000 kb on + strand, within AO353_20805at 4557.000 kb on + strand, within AO353_20805at 4557.001 kb on - strand, within AO353_20805at 4557.001 kb on - strand, within AO353_20805at 4557.142 kb on - strandat 4557.142 kb on - strandat 4557.178 kb on - strandat 4557.180 kb on + strandat 4557.180 kb on + strandat 4557.180 kb on + strandat 4557.180 kb on + strandat 4557.180 kb on + strandat 4557.180 kb on + strandat 4557.181 kb on - strandat 4557.210 kb on + strandat 4557.210 kb on + strandat 4557.210 kb on + strandat 4557.210 kb on + strandat 4557.210 kb on + strandat 4557.210 kb on + strandat 4557.211 kb on - strandat 4557.211 kb on - strandat 4557.233 kb on + strandat 4557.233 kb on + strandat 4557.234 kb on - strandat 4557.234 kb on - strandat 4557.320 kb on + strandat 4557.371 kb on + strandat 4557.371 kb on + strandat 4557.371 kb on + strandat 4557.371 kb on + strandat 4557.372 kb on - strandat 4557.408 kb on + strandat 4557.408 kb on + strandat 4557.409 kb on - strandat 4557.409 kb on - strandat 4557.409 kb on - strandat 4557.415 kb on + strandat 4557.415 kb on + strandat 4557.415 kb on + strandat 4557.415 kb on + strandat 4557.415 kb on + strandat 4557.416 kb on - strandat 4557.416 kb on - strandat 4557.416 kb on - strandat 4557.421 kb on + strandat 4557.422 kb on - strandat 4557.450 kb on + strandat 4557.450 kb on + strandat 4557.450 kb on + strandat 4557.451 kb on - strandat 4557.451 kb on - strandat 4557.451 kb on - strandat 4557.451 kb on - strandat 4557.516 kb on + strandat 4557.516 kb on + strandat 4557.516 kb on + strandat 4557.516 kb on + strandat 4557.516 kb on + strandat 4557.516 kb on + strandat 4557.516 kb on + strandat 4557.516 kb on + strandat 4557.516 kb on + strandat 4557.516 kb on + strandat 4557.516 kb on + strandat 4557.516 kb on + strandat 4557.516 kb on + strandat 4557.516 kb on + strandat 4557.516 kb on + strandat 4557.516 kb on + strandat 4557.517 kb on - strandat 4557.517 kb on - strandat 4557.517 kb on - strandat 4557.517 kb on - strandat 4557.517 kb on - strandat 4557.517 kb on - strandat 4557.517 kb on - strandat 4557.517 kb on - strandat 4557.517 kb on - strandat 4557.517 kb on - strandat 4557.517 kb on - strandat 4557.517 kb on - strandat 4557.517 kb on - strandat 4557.517 kb on - strandat 4557.517 kb on - strandat 4557.517 kb on - strandat 4557.517 kb on - strandat 4557.517 kb on - strandat 4557.528 kb on + strandat 4557.567 kb on + strand, within AO353_20810at 4557.567 kb on + strand, within AO353_20810at 4557.675 kb on - strand, within AO353_20810at 4557.821 kb on - strand, within AO353_20810at 4557.970 kb on + strandat 4557.971 kb on - strandat 4558.051 kb on + strandat 4558.051 kb on + strandat 4558.052 kb on - strandat 4558.052 kb on - strandat 4558.061 kb on + strandat 4558.159 kb on + strandat 4558.159 kb on + strandat 4558.184 kb on + strandat 4558.184 kb on + strandat 4558.185 kb on - strandat 4558.185 kb on - strandat 4558.185 kb on - strandat 4558.185 kb on - strandat 4558.185 kb on - strandat 4558.185 kb on - strandat 4558.185 kb on - strandat 4558.191 kb on - strandat 4558.191 kb on - strandat 4558.191 kb on - strandat 4558.191 kb on - strandat 4558.191 kb on - strandat 4558.246 kb on + strandat 4558.635 kb on + strand, within AO353_20815at 4558.636 kb on - strand, within AO353_20815at 4558.676 kb on + strand, within AO353_20815at 4558.676 kb on + strand, within AO353_20815at 4558.677 kb on - strand, within AO353_20815at 4558.677 kb on - strand, within AO353_20815at 4558.834 kb on + strand, within AO353_20815at 4558.860 kb on + strand, within AO353_20815

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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4,556,646 + AO353_20805 0.52 -0.2
4,556,669 + AO353_20805 0.54 -0.8
4,556,669 + AO353_20805 0.54 +0.6
4,556,669 + AO353_20805 0.54 -1.3
4,556,768 + AO353_20805 0.63 -0.7
4,556,768 + AO353_20805 0.63 -0.9
4,556,768 + AO353_20805 0.63 +0.5
4,556,768 + AO353_20805 0.63 -1.3
4,556,769 - AO353_20805 0.64 -0.2
4,556,769 - AO353_20805 0.64 -0.6
4,556,802 + AO353_20805 0.67 -2.6
4,556,802 + AO353_20805 0.67 +0.3
4,556,802 + AO353_20805 0.67 -1.8
4,556,802 + AO353_20805 0.67 -0.2
4,556,802 + AO353_20805 0.67 +0.8
4,556,803 - AO353_20805 0.67 -0.8
4,556,990 + AO353_20805 0.84 +0.9
4,556,990 + AO353_20805 0.84 +0.6
4,556,991 - AO353_20805 0.84 -0.3
4,556,991 - AO353_20805 0.84 -1.3
4,556,994 + AO353_20805 0.84 -1.3
4,556,994 + AO353_20805 0.84 -1.7
4,556,994 + AO353_20805 0.84 +0.4
4,556,994 + AO353_20805 0.84 -0.3
4,556,994 + AO353_20805 0.84 -0.8
4,556,994 + AO353_20805 0.84 -1.8
4,556,994 + AO353_20805 0.84 -1.5
4,556,994 + AO353_20805 0.84 -0.4
4,556,994 + AO353_20805 0.84 -1.1
4,556,994 + AO353_20805 0.84 -1.5
4,556,994 + AO353_20805 0.84 -0.9
4,556,995 - -0.2
4,556,995 - AO353_20805 0.84 +0.1
4,556,995 - AO353_20805 0.84 +2.8
4,556,995 - AO353_20805 0.84 -0.9
4,557,000 + AO353_20805 0.85 +0.1
4,557,000 + AO353_20805 0.85 -0.4
4,557,000 + AO353_20805 0.85 +0.5
4,557,000 + AO353_20805 0.85 +0.4
4,557,001 - AO353_20805 0.85 -0.4
4,557,001 - AO353_20805 0.85 -1.1
4,557,142 - -1.3
4,557,142 - -1.6
4,557,178 - +0.1
4,557,180 + -1.2
4,557,180 + -0.9
4,557,180 + +0.5
4,557,180 + -0.3
4,557,180 + -0.4
4,557,180 + +0.2
4,557,181 - -0.7
4,557,210 + +0.2
4,557,210 + -0.6
4,557,210 + -0.1
4,557,210 + -2.5
4,557,210 + -0.7
4,557,210 + -1.8
4,557,211 - +0.3
4,557,211 - -0.9
4,557,233 + -1.3
4,557,233 + -0.4
4,557,234 - -1.0
4,557,234 - +0.3
4,557,320 + +0.6
4,557,371 + -1.6
4,557,371 + -0.8
4,557,371 + -0.4
4,557,371 + -0.1
4,557,372 - -0.4
4,557,408 + -0.2
4,557,408 + +0.1
4,557,409 - -1.4
4,557,409 - +0.7
4,557,409 - +0.8
4,557,415 + -0.1
4,557,415 + +0.8
4,557,415 + -1.5
4,557,415 + +0.1
4,557,415 + -0.4
4,557,416 - +0.8
4,557,416 - +0.9
4,557,416 - -0.7
4,557,421 + -2.3
4,557,422 - -0.4
4,557,450 + -0.9
4,557,450 + -0.9
4,557,450 + -0.6
4,557,451 - -0.8
4,557,451 - -0.9
4,557,451 - -1.3
4,557,451 - +0.2
4,557,516 + +0.1
4,557,516 + +0.3
4,557,516 + -1.5
4,557,516 + +0.4
4,557,516 + -0.1
4,557,516 + +1.6
4,557,516 + -0.2
4,557,516 + +0.1
4,557,516 + -0.3
4,557,516 + -0.5
4,557,516 + -0.1
4,557,516 + +1.7
4,557,516 + +1.1
4,557,516 + -0.1
4,557,516 + -0.4
4,557,516 + -1.3
4,557,517 - -1.0
4,557,517 - -0.9
4,557,517 - -1.5
4,557,517 - -0.5
4,557,517 - -0.5
4,557,517 - -1.3
4,557,517 - +1.5
4,557,517 - +0.0
4,557,517 - +1.1
4,557,517 - -0.4
4,557,517 - +0.8
4,557,517 - -1.5
4,557,517 - -1.1
4,557,517 - +1.0
4,557,517 - +1.1
4,557,517 - -0.9
4,557,517 - -1.1
4,557,517 - +0.4
4,557,528 + +0.3
4,557,567 + AO353_20810 0.11 +0.4
4,557,567 + AO353_20810 0.11 -1.0
4,557,675 - AO353_20810 0.35 -0.8
4,557,821 - AO353_20810 0.67 -0.9
4,557,970 + -0.2
4,557,971 - -1.5
4,558,051 + -0.5
4,558,051 + -0.8
4,558,052 - -1.2
4,558,052 - +0.4
4,558,061 + +1.1
4,558,159 + +1.0
4,558,159 + +0.9
4,558,184 + -1.6
4,558,184 + -0.4
4,558,185 - -0.7
4,558,185 - -0.0
4,558,185 - +0.2
4,558,185 - -1.9
4,558,185 - -1.9
4,558,185 - -1.0
4,558,185 - -0.5
4,558,191 - -0.3
4,558,191 - +1.1
4,558,191 - +1.1
4,558,191 - -1.4
4,558,191 - +0.2
4,558,246 + -1.2
4,558,635 + AO353_20815 0.45 -0.9
4,558,636 - AO353_20815 0.45 -0.1
4,558,676 + AO353_20815 0.49 -0.3
4,558,676 + AO353_20815 0.49 -0.8
4,558,677 - AO353_20815 0.49 -0.3
4,558,677 - AO353_20815 0.49 +0.1
4,558,834 + AO353_20815 0.66 +0.1
4,558,860 + AO353_20815 0.68 -0.9

Or see this region's nucleotide sequence