Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_19630

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_19630 and AO353_19635 are separated by 210 nucleotides AO353_19630: AO353_19630 - glucoamylase, at 4,302,642 to 4,304,468 _19630 AO353_19635: AO353_19635 - MFS transporter, at 4,304,679 to 4,305,851 _19635 Position (kb) 4302 4303 4304 4305Strain fitness (log2 ratio) -2 -1 0 1 2at 4301.812 kb on + strandat 4301.832 kb on + strandat 4301.836 kb on + strandat 4301.840 kb on + strandat 4301.840 kb on + strandat 4301.840 kb on + strandat 4301.970 kb on + strandat 4301.971 kb on - strandat 4302.022 kb on - strandat 4302.158 kb on + strandat 4302.159 kb on - strandat 4302.288 kb on + strandat 4302.288 kb on + strandat 4302.289 kb on - strandat 4302.289 kb on - strandat 4302.406 kb on + strandat 4302.406 kb on + strandat 4302.505 kb on + strandat 4302.505 kb on + strandat 4302.505 kb on + strandat 4302.505 kb on + strandat 4302.505 kb on + strandat 4302.644 kb on - strandat 4302.644 kb on - strandat 4302.655 kb on + strandat 4302.656 kb on - strandat 4302.775 kb on + strandat 4302.775 kb on + strandat 4302.797 kb on - strandat 4302.865 kb on + strand, within AO353_19630at 4302.866 kb on - strand, within AO353_19630at 4302.943 kb on + strand, within AO353_19630at 4302.944 kb on - strand, within AO353_19630at 4303.129 kb on + strand, within AO353_19630at 4303.129 kb on + strand, within AO353_19630at 4303.130 kb on - strand, within AO353_19630at 4303.363 kb on + strand, within AO353_19630at 4303.363 kb on + strand, within AO353_19630at 4303.363 kb on + strand, within AO353_19630at 4303.363 kb on + strand, within AO353_19630at 4303.364 kb on - strand, within AO353_19630at 4303.364 kb on - strand, within AO353_19630at 4303.378 kb on + strand, within AO353_19630at 4303.406 kb on + strand, within AO353_19630at 4303.426 kb on + strand, within AO353_19630at 4303.426 kb on + strand, within AO353_19630at 4303.426 kb on + strand, within AO353_19630at 4303.426 kb on + strand, within AO353_19630at 4303.427 kb on - strand, within AO353_19630at 4303.442 kb on + strand, within AO353_19630at 4303.442 kb on + strand, within AO353_19630at 4303.446 kb on + strand, within AO353_19630at 4303.447 kb on - strand, within AO353_19630at 4303.522 kb on + strand, within AO353_19630at 4303.522 kb on + strand, within AO353_19630at 4303.522 kb on + strand, within AO353_19630at 4303.522 kb on + strand, within AO353_19630at 4303.522 kb on + strand, within AO353_19630at 4303.522 kb on + strand, within AO353_19630at 4303.523 kb on - strand, within AO353_19630at 4303.523 kb on - strand, within AO353_19630at 4303.588 kb on + strand, within AO353_19630at 4303.588 kb on + strand, within AO353_19630at 4303.588 kb on + strand, within AO353_19630at 4303.588 kb on + strand, within AO353_19630at 4303.588 kb on + strand, within AO353_19630at 4303.588 kb on + strand, within AO353_19630at 4303.589 kb on - strand, within AO353_19630at 4303.589 kb on - strand, within AO353_19630at 4303.589 kb on - strand, within AO353_19630at 4303.589 kb on - strand, within AO353_19630at 4303.589 kb on - strand, within AO353_19630at 4303.589 kb on - strand, within AO353_19630at 4303.631 kb on - strand, within AO353_19630at 4303.631 kb on - strand, within AO353_19630at 4303.631 kb on - strand, within AO353_19630at 4303.631 kb on - strand, within AO353_19630at 4303.631 kb on - strand, within AO353_19630at 4303.631 kb on - strand, within AO353_19630at 4303.663 kb on + strand, within AO353_19630at 4303.663 kb on + strand, within AO353_19630at 4303.664 kb on - strand, within AO353_19630at 4303.965 kb on + strand, within AO353_19630at 4303.965 kb on + strand, within AO353_19630at 4303.965 kb on + strand, within AO353_19630at 4303.965 kb on + strand, within AO353_19630at 4303.966 kb on - strand, within AO353_19630at 4303.966 kb on - strand, within AO353_19630at 4303.966 kb on - strand, within AO353_19630at 4303.999 kb on - strand, within AO353_19630at 4304.071 kb on + strand, within AO353_19630at 4304.072 kb on - strand, within AO353_19630at 4304.072 kb on - strand, within AO353_19630at 4304.248 kb on + strand, within AO353_19630at 4304.248 kb on + strand, within AO353_19630at 4304.249 kb on - strand, within AO353_19630at 4304.455 kb on + strandat 4304.455 kb on + strandat 4304.455 kb on + strandat 4304.456 kb on - strandat 4304.494 kb on + strandat 4304.494 kb on + strandat 4304.494 kb on + strandat 4304.494 kb on + strandat 4304.494 kb on + strandat 4304.494 kb on + strandat 4304.494 kb on + strandat 4304.494 kb on + strandat 4304.494 kb on + strandat 4304.494 kb on + strandat 4304.495 kb on - strandat 4304.495 kb on - strandat 4304.495 kb on - strandat 4304.495 kb on - strandat 4304.495 kb on - strandat 4304.495 kb on - strandat 4304.495 kb on - strandat 4304.495 kb on - strandat 4304.495 kb on - strandat 4304.537 kb on + strandat 4304.538 kb on - strandat 4304.538 kb on - strandat 4304.538 kb on - strandat 4304.538 kb on - strandat 4304.565 kb on - strandat 4304.611 kb on + strandat 4304.611 kb on + strandat 4304.611 kb on + strandat 4304.611 kb on + strandat 4304.611 kb on + strandat 4304.611 kb on + strandat 4304.612 kb on - strandat 4304.612 kb on - strandat 4304.612 kb on - strandat 4304.626 kb on - strandat 4304.628 kb on + strandat 4304.628 kb on + strandat 4304.628 kb on + strandat 4304.629 kb on - strandat 4304.692 kb on - strandat 4304.969 kb on + strand, within AO353_19635at 4304.970 kb on - strand, within AO353_19635at 4304.970 kb on - strand, within AO353_19635at 4305.073 kb on - strand, within AO353_19635at 4305.091 kb on + strand, within AO353_19635at 4305.091 kb on + strand, within AO353_19635at 4305.091 kb on + strand, within AO353_19635at 4305.091 kb on + strand, within AO353_19635at 4305.092 kb on - strand, within AO353_19635at 4305.092 kb on - strand, within AO353_19635at 4305.092 kb on - strand, within AO353_19635at 4305.102 kb on + strand, within AO353_19635at 4305.103 kb on - strand, within AO353_19635at 4305.137 kb on + strand, within AO353_19635at 4305.317 kb on + strand, within AO353_19635at 4305.318 kb on - strandat 4305.318 kb on - strand, within AO353_19635at 4305.319 kb on + strand, within AO353_19635at 4305.319 kb on + strand, within AO353_19635at 4305.319 kb on + strand, within AO353_19635at 4305.319 kb on + strand, within AO353_19635at 4305.319 kb on + strand, within AO353_19635at 4305.319 kb on + strand, within AO353_19635at 4305.319 kb on + strand, within AO353_19635at 4305.319 kb on + strand, within AO353_19635at 4305.319 kb on + strand, within AO353_19635at 4305.319 kb on + strand, within AO353_19635at 4305.319 kb on + strand, within AO353_19635at 4305.319 kb on + strand, within AO353_19635at 4305.319 kb on + strand, within AO353_19635at 4305.319 kb on + strand, within AO353_19635at 4305.319 kb on + strand, within AO353_19635at 4305.319 kb on + strand, within AO353_19635at 4305.319 kb on + strand, within AO353_19635at 4305.319 kb on + strand, within AO353_19635at 4305.319 kb on + strand, within AO353_19635at 4305.319 kb on + strand, within AO353_19635at 4305.320 kb on - strand, within AO353_19635at 4305.320 kb on - strand, within AO353_19635at 4305.320 kb on - strand, within AO353_19635at 4305.320 kb on - strand, within AO353_19635at 4305.320 kb on - strand, within AO353_19635at 4305.320 kb on - strand, within AO353_19635at 4305.320 kb on - strand, within AO353_19635at 4305.320 kb on - strand, within AO353_19635at 4305.320 kb on - strand, within AO353_19635at 4305.320 kb on - strand, within AO353_19635at 4305.320 kb on - strand, within AO353_19635at 4305.320 kb on - strand, within AO353_19635at 4305.320 kb on - strand, within AO353_19635at 4305.320 kb on - strand, within AO353_19635at 4305.320 kb on - strand, within AO353_19635at 4305.320 kb on - strand, within AO353_19635at 4305.320 kb on - strand, within AO353_19635at 4305.320 kb on - strand, within AO353_19635at 4305.320 kb on - strand, within AO353_19635at 4305.320 kb on - strand, within AO353_19635at 4305.320 kb on - strand, within AO353_19635at 4305.320 kb on - strand, within AO353_19635at 4305.320 kb on - strand, within AO353_19635at 4305.441 kb on + strand, within AO353_19635at 4305.441 kb on + strand, within AO353_19635at 4305.441 kb on + strand, within AO353_19635at 4305.442 kb on - strand, within AO353_19635at 4305.442 kb on - strand, within AO353_19635

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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4,301,812 + +0.8
4,301,832 + -0.8
4,301,836 + +0.0
4,301,840 + -0.2
4,301,840 + -1.9
4,301,840 + +1.2
4,301,970 + -1.1
4,301,971 - -1.0
4,302,022 - -1.3
4,302,158 + -0.7
4,302,159 - +0.9
4,302,288 + -1.1
4,302,288 + +0.6
4,302,289 - -1.2
4,302,289 - +0.7
4,302,406 + -0.7
4,302,406 + +0.7
4,302,505 + -0.6
4,302,505 + +0.2
4,302,505 + -0.7
4,302,505 + -0.1
4,302,505 + +0.7
4,302,644 - -0.2
4,302,644 - -0.7
4,302,655 + +0.2
4,302,656 - -0.5
4,302,775 + -1.3
4,302,775 + +0.5
4,302,797 - -0.7
4,302,865 + AO353_19630 0.12 -0.2
4,302,866 - AO353_19630 0.12 -0.7
4,302,943 + AO353_19630 0.16 -2.2
4,302,944 - AO353_19630 0.17 -0.7
4,303,129 + AO353_19630 0.27 -0.2
4,303,129 + AO353_19630 0.27 -1.8
4,303,130 - AO353_19630 0.27 -0.2
4,303,363 + AO353_19630 0.39 -1.0
4,303,363 + AO353_19630 0.39 +1.0
4,303,363 + AO353_19630 0.39 +0.7
4,303,363 + AO353_19630 0.39 -0.6
4,303,364 - AO353_19630 0.40 -0.6
4,303,364 - AO353_19630 0.40 -0.9
4,303,378 + AO353_19630 0.40 -0.4
4,303,406 + AO353_19630 0.42 +0.3
4,303,426 + AO353_19630 0.43 -1.0
4,303,426 + AO353_19630 0.43 -0.5
4,303,426 + AO353_19630 0.43 -1.8
4,303,426 + AO353_19630 0.43 -1.1
4,303,427 - AO353_19630 0.43 -0.3
4,303,442 + AO353_19630 0.44 +1.2
4,303,442 + AO353_19630 0.44 -0.5
4,303,446 + AO353_19630 0.44 -0.8
4,303,447 - AO353_19630 0.44 -0.7
4,303,522 + AO353_19630 0.48 -2.1
4,303,522 + AO353_19630 0.48 +0.4
4,303,522 + AO353_19630 0.48 -1.3
4,303,522 + AO353_19630 0.48 -0.2
4,303,522 + AO353_19630 0.48 +2.5
4,303,522 + AO353_19630 0.48 +0.3
4,303,523 - AO353_19630 0.48 +0.6
4,303,523 - AO353_19630 0.48 -1.0
4,303,588 + AO353_19630 0.52 -0.5
4,303,588 + AO353_19630 0.52 +1.9
4,303,588 + AO353_19630 0.52 -0.2
4,303,588 + AO353_19630 0.52 -0.6
4,303,588 + AO353_19630 0.52 +1.3
4,303,588 + AO353_19630 0.52 +0.0
4,303,589 - AO353_19630 0.52 -1.1
4,303,589 - AO353_19630 0.52 +0.2
4,303,589 - AO353_19630 0.52 +0.4
4,303,589 - AO353_19630 0.52 +1.0
4,303,589 - AO353_19630 0.52 +0.0
4,303,589 - AO353_19630 0.52 -1.4
4,303,631 - AO353_19630 0.54 -1.0
4,303,631 - AO353_19630 0.54 +1.1
4,303,631 - AO353_19630 0.54 +0.4
4,303,631 - AO353_19630 0.54 +0.2
4,303,631 - AO353_19630 0.54 -0.8
4,303,631 - AO353_19630 0.54 -0.3
4,303,663 + AO353_19630 0.56 -0.3
4,303,663 + AO353_19630 0.56 +0.3
4,303,664 - AO353_19630 0.56 +0.2
4,303,965 + AO353_19630 0.72 +1.1
4,303,965 + AO353_19630 0.72 +0.2
4,303,965 + AO353_19630 0.72 +0.0
4,303,965 + AO353_19630 0.72 +0.1
4,303,966 - AO353_19630 0.72 +0.0
4,303,966 - AO353_19630 0.72 -1.3
4,303,966 - AO353_19630 0.72 +0.2
4,303,999 - AO353_19630 0.74 -1.2
4,304,071 + AO353_19630 0.78 -0.3
4,304,072 - AO353_19630 0.78 +0.1
4,304,072 - AO353_19630 0.78 -0.2
4,304,248 + AO353_19630 0.88 -0.6
4,304,248 + AO353_19630 0.88 +1.8
4,304,249 - AO353_19630 0.88 +0.5
4,304,455 + -1.1
4,304,455 + -0.0
4,304,455 + -1.1
4,304,456 - -0.6
4,304,494 + +0.3
4,304,494 + -1.1
4,304,494 + +0.1
4,304,494 + -0.5
4,304,494 + -0.8
4,304,494 + +1.0
4,304,494 + -1.1
4,304,494 + +0.1
4,304,494 + +1.3
4,304,494 + -0.3
4,304,495 - -2.0
4,304,495 - +0.7
4,304,495 - -1.0
4,304,495 - -1.9
4,304,495 - +0.4
4,304,495 - -0.1
4,304,495 - -0.1
4,304,495 - +1.1
4,304,495 - -0.3
4,304,537 + -0.8
4,304,538 - -1.0
4,304,538 - -0.3
4,304,538 - -1.4
4,304,538 - -0.6
4,304,565 - -0.6
4,304,611 + -0.6
4,304,611 + +0.7
4,304,611 + -1.0
4,304,611 + +1.2
4,304,611 + -0.1
4,304,611 + -0.8
4,304,612 - +0.3
4,304,612 - -1.0
4,304,612 - -0.2
4,304,626 - -0.6
4,304,628 + -0.6
4,304,628 + +1.0
4,304,628 + +0.2
4,304,629 - -0.3
4,304,692 - -0.6
4,304,969 + AO353_19635 0.25 -0.4
4,304,970 - AO353_19635 0.25 -0.3
4,304,970 - AO353_19635 0.25 +0.8
4,305,073 - AO353_19635 0.34 +0.1
4,305,091 + AO353_19635 0.35 -0.7
4,305,091 + AO353_19635 0.35 +0.9
4,305,091 + AO353_19635 0.35 -0.7
4,305,091 + AO353_19635 0.35 -0.6
4,305,092 - AO353_19635 0.35 -0.3
4,305,092 - AO353_19635 0.35 +1.3
4,305,092 - AO353_19635 0.35 +0.2
4,305,102 + AO353_19635 0.36 -2.4
4,305,103 - AO353_19635 0.36 -1.8
4,305,137 + AO353_19635 0.39 -0.2
4,305,317 + AO353_19635 0.54 +0.5
4,305,318 - +0.5
4,305,318 - AO353_19635 0.54 -0.3
4,305,319 + AO353_19635 0.55 -1.3
4,305,319 + AO353_19635 0.55 -0.0
4,305,319 + AO353_19635 0.55 +0.6
4,305,319 + AO353_19635 0.55 +0.2
4,305,319 + AO353_19635 0.55 +0.0
4,305,319 + AO353_19635 0.55 -1.0
4,305,319 + AO353_19635 0.55 -0.3
4,305,319 + AO353_19635 0.55 -0.5
4,305,319 + AO353_19635 0.55 -0.6
4,305,319 + AO353_19635 0.55 -0.4
4,305,319 + AO353_19635 0.55 +0.0
4,305,319 + AO353_19635 0.55 +0.1
4,305,319 + AO353_19635 0.55 -1.1
4,305,319 + AO353_19635 0.55 -1.2
4,305,319 + AO353_19635 0.55 +0.4
4,305,319 + AO353_19635 0.55 -0.8
4,305,319 + AO353_19635 0.55 -0.7
4,305,319 + AO353_19635 0.55 +0.5
4,305,319 + AO353_19635 0.55 -0.3
4,305,319 + AO353_19635 0.55 +0.7
4,305,320 - AO353_19635 0.55 +0.8
4,305,320 - AO353_19635 0.55 +0.9
4,305,320 - AO353_19635 0.55 +1.1
4,305,320 - AO353_19635 0.55 -1.7
4,305,320 - AO353_19635 0.55 -0.1
4,305,320 - AO353_19635 0.55 -1.7
4,305,320 - AO353_19635 0.55 +0.9
4,305,320 - AO353_19635 0.55 +0.3
4,305,320 - AO353_19635 0.55 -0.8
4,305,320 - AO353_19635 0.55 -1.0
4,305,320 - AO353_19635 0.55 -1.8
4,305,320 - AO353_19635 0.55 -0.1
4,305,320 - AO353_19635 0.55 +0.0
4,305,320 - AO353_19635 0.55 +0.7
4,305,320 - AO353_19635 0.55 -1.8
4,305,320 - AO353_19635 0.55 -0.4
4,305,320 - AO353_19635 0.55 -0.2
4,305,320 - AO353_19635 0.55 -0.5
4,305,320 - AO353_19635 0.55 +1.5
4,305,320 - AO353_19635 0.55 +0.5
4,305,320 - AO353_19635 0.55 +0.5
4,305,320 - AO353_19635 0.55 +0.3
4,305,320 - AO353_19635 0.55 +0.6
4,305,441 + AO353_19635 0.65 +0.5
4,305,441 + AO353_19635 0.65 -1.3
4,305,441 + AO353_19635 0.65 -2.0
4,305,442 - AO353_19635 0.65 -0.0
4,305,442 - AO353_19635 0.65 -1.8

Or see this region's nucleotide sequence