Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_16040

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_16035 and AO353_16040 are separated by 651 nucleotidesAO353_16040 and AO353_16045 are separated by 549 nucleotides AO353_16035: AO353_16035 - Lon protease, at 3,543,024 to 3,545,444 _16035 AO353_16040: AO353_16040 - hypothetical protein, at 3,546,096 to 3,546,467 _16040 AO353_16045: AO353_16045 - glucose dehydrogenase, at 3,547,017 to 3,549,428 _16045 Position (kb) 3546 3547Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3545.277 kb on + strandat 3545.277 kb on + strandat 3545.278 kb on - strandat 3545.278 kb on - strandat 3545.278 kb on - strandat 3545.278 kb on - strandat 3545.278 kb on - strandat 3545.320 kb on + strandat 3545.320 kb on + strandat 3545.320 kb on + strandat 3545.320 kb on + strandat 3545.321 kb on - strandat 3545.321 kb on - strandat 3545.321 kb on - strandat 3545.404 kb on + strandat 3545.405 kb on - strandat 3545.466 kb on - strandat 3545.474 kb on + strandat 3545.474 kb on + strandat 3545.474 kb on + strandat 3545.474 kb on + strandat 3545.474 kb on + strandat 3545.474 kb on + strandat 3545.474 kb on + strandat 3545.474 kb on + strandat 3545.474 kb on + strandat 3545.475 kb on - strandat 3545.475 kb on - strandat 3545.475 kb on - strandat 3545.531 kb on + strandat 3545.531 kb on + strandat 3545.531 kb on + strandat 3545.531 kb on + strandat 3545.531 kb on + strandat 3545.532 kb on - strandat 3545.532 kb on - strandat 3545.532 kb on - strandat 3545.532 kb on - strandat 3545.532 kb on - strandat 3545.538 kb on + strandat 3545.538 kb on + strandat 3545.538 kb on + strandat 3545.538 kb on + strandat 3545.538 kb on + strandat 3545.538 kb on + strandat 3545.539 kb on - strandat 3545.539 kb on - strandat 3545.539 kb on - strandat 3545.539 kb on - strandat 3545.539 kb on - strandat 3545.539 kb on - strandat 3545.539 kb on - strandat 3545.539 kb on - strandat 3545.539 kb on - strandat 3545.539 kb on - strandat 3545.539 kb on - strandat 3545.539 kb on - strandat 3545.539 kb on - strandat 3545.550 kb on + strandat 3545.550 kb on + strandat 3545.550 kb on + strandat 3545.550 kb on + strandat 3545.550 kb on + strandat 3545.550 kb on + strandat 3545.550 kb on + strandat 3545.550 kb on + strandat 3545.550 kb on + strandat 3545.550 kb on + strandat 3545.550 kb on + strandat 3545.551 kb on - strandat 3545.551 kb on - strandat 3545.551 kb on - strandat 3545.551 kb on - strandat 3545.551 kb on - strandat 3545.551 kb on - strandat 3545.551 kb on - strandat 3545.551 kb on - strandat 3545.551 kb on - strandat 3545.551 kb on - strandat 3545.551 kb on - strandat 3545.551 kb on - strandat 3545.555 kb on + strandat 3545.555 kb on + strandat 3545.555 kb on + strandat 3545.556 kb on - strandat 3545.556 kb on - strandat 3545.599 kb on + strandat 3545.599 kb on + strandat 3545.599 kb on + strandat 3545.599 kb on + strandat 3545.599 kb on + strandat 3545.599 kb on + strandat 3545.600 kb on - strandat 3545.600 kb on - strandat 3545.600 kb on - strandat 3545.614 kb on + strandat 3545.614 kb on + strandat 3545.614 kb on + strandat 3545.615 kb on - strandat 3545.615 kb on - strandat 3545.615 kb on - strandat 3545.615 kb on - strandat 3545.615 kb on - strandat 3545.615 kb on - strandat 3545.615 kb on - strandat 3545.686 kb on + strandat 3545.686 kb on + strandat 3545.687 kb on - strandat 3545.687 kb on - strandat 3545.687 kb on - strandat 3545.687 kb on - strandat 3545.687 kb on - strandat 3545.687 kb on - strandat 3545.687 kb on - strandat 3545.687 kb on - strandat 3545.687 kb on - strandat 3545.687 kb on - strandat 3545.687 kb on - strandat 3545.687 kb on - strandat 3545.687 kb on - strandat 3545.687 kb on - strandat 3545.687 kb on - strandat 3545.687 kb on - strandat 3545.687 kb on - strandat 3545.691 kb on - strandat 3545.691 kb on - strandat 3545.691 kb on - strandat 3545.691 kb on - strandat 3545.691 kb on - strandat 3545.691 kb on - strandat 3546.032 kb on + strandat 3546.032 kb on + strandat 3546.044 kb on + strandat 3546.044 kb on + strandat 3546.044 kb on + strandat 3546.045 kb on - strandat 3546.045 kb on - strandat 3546.045 kb on - strandat 3546.045 kb on - strandat 3546.045 kb on - strandat 3546.045 kb on - strandat 3546.045 kb on - strandat 3546.053 kb on + strandat 3546.054 kb on - strandat 3546.054 kb on - strandat 3546.054 kb on - strandat 3546.098 kb on - strandat 3546.361 kb on + strand, within AO353_16040at 3546.361 kb on + strand, within AO353_16040at 3546.362 kb on - strand, within AO353_16040at 3546.418 kb on + strand, within AO353_16040at 3546.418 kb on + strand, within AO353_16040at 3546.419 kb on - strand, within AO353_16040at 3546.484 kb on + strandat 3546.485 kb on - strandat 3546.485 kb on - strandat 3546.532 kb on + strandat 3546.533 kb on - strandat 3546.558 kb on - strandat 3546.558 kb on - strandat 3546.558 kb on - strandat 3546.558 kb on - strandat 3546.570 kb on + strandat 3546.580 kb on + strandat 3546.600 kb on + strandat 3546.619 kb on + strandat 3546.619 kb on + strandat 3546.619 kb on + strandat 3546.619 kb on + strandat 3546.619 kb on + strandat 3546.620 kb on - strandat 3546.660 kb on + strandat 3546.661 kb on - strandat 3546.661 kb on - strandat 3546.667 kb on + strandat 3546.667 kb on + strandat 3546.667 kb on + strandat 3546.667 kb on + strandat 3546.668 kb on - strandat 3546.668 kb on - strandat 3546.668 kb on - strandat 3546.668 kb on - strandat 3546.668 kb on - strandat 3546.668 kb on - strandat 3546.668 kb on - strandat 3546.668 kb on - strandat 3546.717 kb on + strandat 3546.717 kb on + strandat 3546.717 kb on + strandat 3546.717 kb on + strandat 3546.717 kb on + strandat 3546.717 kb on + strandat 3546.717 kb on + strandat 3546.717 kb on + strandat 3546.717 kb on + strandat 3546.717 kb on + strandat 3546.717 kb on + strandat 3546.718 kb on - strandat 3546.718 kb on - strandat 3546.718 kb on - strandat 3546.718 kb on - strandat 3546.718 kb on - strandat 3546.718 kb on - strandat 3546.721 kb on + strandat 3546.721 kb on + strandat 3546.721 kb on + strandat 3546.721 kb on + strandat 3546.721 kb on + strandat 3546.721 kb on + strandat 3546.722 kb on - strandat 3546.722 kb on - strandat 3546.775 kb on + strandat 3546.775 kb on + strandat 3546.776 kb on - strandat 3546.776 kb on - strandat 3546.787 kb on - strandat 3546.933 kb on + strandat 3546.933 kb on + strandat 3546.933 kb on + strandat 3546.933 kb on + strandat 3546.933 kb on + strandat 3546.933 kb on + strandat 3546.934 kb on - strandat 3546.934 kb on - strandat 3546.943 kb on + strandat 3546.943 kb on + strandat 3546.943 kb on + strandat 3546.943 kb on + strandat 3546.943 kb on + strandat 3546.943 kb on + strandat 3546.943 kb on + strandat 3546.943 kb on + strandat 3546.944 kb on - strandat 3546.944 kb on - strandat 3546.944 kb on - strandat 3546.944 kb on - strandat 3546.944 kb on - strandat 3546.944 kb on - strandat 3546.944 kb on - strandat 3546.944 kb on - strandat 3546.944 kb on - strandat 3546.944 kb on - strandat 3546.950 kb on + strandat 3546.950 kb on + strandat 3546.951 kb on - strandat 3546.951 kb on - strandat 3546.951 kb on - strandat 3546.951 kb on - strandat 3546.986 kb on + strandat 3546.986 kb on + strandat 3546.987 kb on - strandat 3547.001 kb on + strandat 3547.001 kb on + strandat 3547.002 kb on - strandat 3547.002 kb on - strandat 3547.019 kb on - strandat 3547.033 kb on + strandat 3547.033 kb on + strandat 3547.033 kb on + strandat 3547.034 kb on - strandat 3547.034 kb on - strandat 3547.034 kb on - strandat 3547.045 kb on + strandat 3547.045 kb on + strandat 3547.045 kb on + strandat 3547.045 kb on + strandat 3547.046 kb on - strandat 3547.046 kb on - strandat 3547.046 kb on - strandat 3547.046 kb on - strandat 3547.086 kb on + strandat 3547.086 kb on + strandat 3547.086 kb on + strandat 3547.086 kb on + strandat 3547.086 kb on + strandat 3547.086 kb on + strandat 3547.087 kb on - strandat 3547.087 kb on - strandat 3547.087 kb on - strandat 3547.087 kb on - strandat 3547.087 kb on - strandat 3547.099 kb on + strandat 3547.099 kb on + strandat 3547.099 kb on + strandat 3547.099 kb on + strandat 3547.099 kb on + strandat 3547.100 kb on - strandat 3547.100 kb on - strandat 3547.100 kb on - strandat 3547.100 kb on - strandat 3547.100 kb on - strandat 3547.123 kb on + strandat 3547.123 kb on + strandat 3547.123 kb on + strandat 3547.123 kb on + strandat 3547.123 kb on + strandat 3547.124 kb on - strandat 3547.124 kb on - strandat 3547.124 kb on - strandat 3547.124 kb on - strandat 3547.195 kb on + strandat 3547.195 kb on + strandat 3547.196 kb on - strandat 3547.196 kb on - strandat 3547.196 kb on - strandat 3547.196 kb on - strandat 3547.207 kb on + strandat 3547.208 kb on - strandat 3547.378 kb on + strand, within AO353_16045at 3547.378 kb on + strand, within AO353_16045at 3547.379 kb on - strand, within AO353_16045at 3547.379 kb on - strand, within AO353_16045at 3547.444 kb on + strand, within AO353_16045

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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3,545,277 + -1.2
3,545,277 + -0.5
3,545,278 - +0.4
3,545,278 - -0.1
3,545,278 - -0.3
3,545,278 - +1.2
3,545,278 - -1.8
3,545,320 + +0.5
3,545,320 + +0.4
3,545,320 + -0.1
3,545,320 + +0.9
3,545,321 - +0.4
3,545,321 - -1.3
3,545,321 - -0.7
3,545,404 + -0.4
3,545,405 - +0.2
3,545,466 - +1.4
3,545,474 + -0.2
3,545,474 + -0.8
3,545,474 + -0.7
3,545,474 + +0.4
3,545,474 + +0.5
3,545,474 + -0.0
3,545,474 + -0.2
3,545,474 + -0.5
3,545,474 + +1.2
3,545,475 - +0.6
3,545,475 - -0.6
3,545,475 - -0.1
3,545,531 + -1.5
3,545,531 + -0.3
3,545,531 + -0.4
3,545,531 + -1.8
3,545,531 + +0.8
3,545,532 - -1.9
3,545,532 - -0.4
3,545,532 - +0.3
3,545,532 - -0.4
3,545,532 - -1.5
3,545,538 + +0.1
3,545,538 + -0.9
3,545,538 + -0.1
3,545,538 + -0.2
3,545,538 + +0.6
3,545,538 + +0.9
3,545,539 - -0.9
3,545,539 - +0.2
3,545,539 - -0.1
3,545,539 - -0.6
3,545,539 - -1.6
3,545,539 - +0.1
3,545,539 - -0.9
3,545,539 - +0.2
3,545,539 - +0.2
3,545,539 - -0.4
3,545,539 - -0.3
3,545,539 - -0.8
3,545,539 - -0.7
3,545,550 + -0.4
3,545,550 + +0.1
3,545,550 + +0.5
3,545,550 + +1.0
3,545,550 + +0.2
3,545,550 + -0.2
3,545,550 + -1.0
3,545,550 + +1.2
3,545,550 + -0.7
3,545,550 + +0.4
3,545,550 + -1.1
3,545,551 - +0.5
3,545,551 - +0.6
3,545,551 - -1.1
3,545,551 - -0.1
3,545,551 - +0.4
3,545,551 - -0.1
3,545,551 - -0.6
3,545,551 - -0.8
3,545,551 - +2.0
3,545,551 - +0.8
3,545,551 - +0.6
3,545,551 - +0.5
3,545,555 + +0.3
3,545,555 + +1.2
3,545,555 + -0.4
3,545,556 - -1.6
3,545,556 - -1.7
3,545,599 + -0.6
3,545,599 + +0.3
3,545,599 + +0.1
3,545,599 + +0.8
3,545,599 + -0.2
3,545,599 + +1.0
3,545,600 - +0.8
3,545,600 - -0.4
3,545,600 - -0.5
3,545,614 + +0.6
3,545,614 + +0.8
3,545,614 + -1.8
3,545,615 - -0.6
3,545,615 - +0.1
3,545,615 - +1.0
3,545,615 - -0.5
3,545,615 - -0.4
3,545,615 - +0.4
3,545,615 - -2.4
3,545,686 + -0.6
3,545,686 + +0.8
3,545,687 - +0.1
3,545,687 - +0.0
3,545,687 - +0.1
3,545,687 - -0.3
3,545,687 - +0.6
3,545,687 - -0.6
3,545,687 - +1.8
3,545,687 - +1.6
3,545,687 - +1.7
3,545,687 - -0.3
3,545,687 - -0.2
3,545,687 - -1.4
3,545,687 - -0.0
3,545,687 - +0.2
3,545,687 - +0.4
3,545,687 - +0.3
3,545,687 - +0.2
3,545,691 - +0.8
3,545,691 - +1.2
3,545,691 - -0.4
3,545,691 - -0.0
3,545,691 - -0.3
3,545,691 - -0.2
3,546,032 + +0.8
3,546,032 + -0.1
3,546,044 + -1.0
3,546,044 + -1.1
3,546,044 + -0.0
3,546,045 - +0.4
3,546,045 - +1.2
3,546,045 - -1.8
3,546,045 - +1.0
3,546,045 - -1.5
3,546,045 - +0.1
3,546,045 - +0.2
3,546,053 + +1.0
3,546,054 - +0.2
3,546,054 - -0.0
3,546,054 - +0.8
3,546,098 - +0.2
3,546,361 + AO353_16040 0.71 -1.1
3,546,361 + AO353_16040 0.71 +1.0
3,546,362 - AO353_16040 0.72 -1.6
3,546,418 + AO353_16040 0.87 -3.1
3,546,418 + AO353_16040 0.87 -0.4
3,546,419 - AO353_16040 0.87 +0.6
3,546,484 + +0.8
3,546,485 - +1.1
3,546,485 - -0.2
3,546,532 + +0.2
3,546,533 - -0.3
3,546,558 - -0.4
3,546,558 - -1.2
3,546,558 - -0.7
3,546,558 - +0.7
3,546,570 + -0.6
3,546,580 + -0.9
3,546,600 + -1.5
3,546,619 + +1.5
3,546,619 + -0.4
3,546,619 + -0.4
3,546,619 + -0.7
3,546,619 + +0.0
3,546,620 - -0.4
3,546,660 + -0.8
3,546,661 - +0.1
3,546,661 - -0.9
3,546,667 + +0.4
3,546,667 + -0.6
3,546,667 + -0.1
3,546,667 + -0.2
3,546,668 - -1.0
3,546,668 - -0.4
3,546,668 - -2.0
3,546,668 - +0.1
3,546,668 - -0.2
3,546,668 - +0.0
3,546,668 - -0.4
3,546,668 - +1.0
3,546,717 + +0.1
3,546,717 + -0.2
3,546,717 + +0.8
3,546,717 + +0.7
3,546,717 + +0.3
3,546,717 + -1.0
3,546,717 + -0.4
3,546,717 + -0.8
3,546,717 + -1.2
3,546,717 + -0.8
3,546,717 + -1.3
3,546,718 - +0.4
3,546,718 - +0.4
3,546,718 - -0.6
3,546,718 - -0.7
3,546,718 - -0.4
3,546,718 - +0.7
3,546,721 + -0.7
3,546,721 + +1.9
3,546,721 + +1.0
3,546,721 + +0.7
3,546,721 + -1.0
3,546,721 + -0.9
3,546,722 - -0.3
3,546,722 - -0.4
3,546,775 + +0.1
3,546,775 + +0.7
3,546,776 - -1.3
3,546,776 - -0.0
3,546,787 - +0.8
3,546,933 + -0.8
3,546,933 + -1.2
3,546,933 + -1.4
3,546,933 + +0.2
3,546,933 + -0.4
3,546,933 + -0.6
3,546,934 - -0.8
3,546,934 - -0.4
3,546,943 + -0.5
3,546,943 + -2.2
3,546,943 + -0.6
3,546,943 + -1.9
3,546,943 + -1.8
3,546,943 + -1.1
3,546,943 + +0.0
3,546,943 + -0.9
3,546,944 - -0.0
3,546,944 - -0.2
3,546,944 - -1.0
3,546,944 - -0.7
3,546,944 - +0.2
3,546,944 - -0.8
3,546,944 - +0.4
3,546,944 - +0.8
3,546,944 - -0.8
3,546,944 - -1.1
3,546,950 + +1.5
3,546,950 + +1.0
3,546,951 - -1.0
3,546,951 - -0.5
3,546,951 - -0.7
3,546,951 - +0.4
3,546,986 + -0.9
3,546,986 + -0.6
3,546,987 - -2.2
3,547,001 + -1.8
3,547,001 + -1.1
3,547,002 - -0.2
3,547,002 - -0.4
3,547,019 - +0.0
3,547,033 + -1.0
3,547,033 + +0.2
3,547,033 + -0.4
3,547,034 - +0.7
3,547,034 - -1.9
3,547,034 - -1.8
3,547,045 + +0.8
3,547,045 + -0.2
3,547,045 + -1.6
3,547,045 + -0.8
3,547,046 - -1.3
3,547,046 - +1.0
3,547,046 - -0.7
3,547,046 - +0.4
3,547,086 + -2.3
3,547,086 + -0.6
3,547,086 + -0.7
3,547,086 + -1.2
3,547,086 + -0.7
3,547,086 + +0.6
3,547,087 - +1.4
3,547,087 - -2.3
3,547,087 - +1.9
3,547,087 - -0.0
3,547,087 - -0.3
3,547,099 + +0.1
3,547,099 + +2.5
3,547,099 + -0.6
3,547,099 + -0.2
3,547,099 + +1.3
3,547,100 - +0.2
3,547,100 - +0.2
3,547,100 - -0.9
3,547,100 - -1.4
3,547,100 - -2.0
3,547,123 + -0.8
3,547,123 + -0.7
3,547,123 + +1.5
3,547,123 + +1.2
3,547,123 + +0.6
3,547,124 - -0.4
3,547,124 - -1.3
3,547,124 - -1.4
3,547,124 - -0.1
3,547,195 + +0.8
3,547,195 + -1.9
3,547,196 - -0.3
3,547,196 - -1.0
3,547,196 - -0.2
3,547,196 - -0.6
3,547,207 + +1.5
3,547,208 - -2.1
3,547,378 + AO353_16045 0.15 -0.5
3,547,378 + AO353_16045 0.15 -0.2
3,547,379 - AO353_16045 0.15 +0.9
3,547,379 - AO353_16045 0.15 +0.4
3,547,444 + AO353_16045 0.18 -1.0

Or see this region's nucleotide sequence