Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_15250 and AO353_15255 overlap by 1 nucleotides AO353_15255 and AO353_15260 are separated by 150 nucleotides AO353_15260 and AO353_15265 are separated by 16 nucleotides AO353_15265 and AO353_15270 are separated by 138 nucleotides
AO353_15250: AO353_15250 - cytochrome B, at 3,370,508 to 3,371,719
_15250
AO353_15255: AO353_15255 - cytochrome C, at 3,371,719 to 3,372,501
_15255
AO353_15260: AO353_15260 - stringent starvation protein A, at 3,372,652 to 3,373,269
_15260
AO353_15265: AO353_15265 - peptidase, at 3,373,286 to 3,373,699
_15265
AO353_15270: AO353_15270 - phospholipid-binding protein, at 3,373,838 to 3,374,416
_15270
Position (kb)
3372
3373
3374 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3371.669 kb on + strand at 3371.738 kb on + strand at 3372.075 kb on + strand, within AO353_15255 at 3372.109 kb on + strand, within AO353_15255 at 3372.424 kb on + strand at 3372.424 kb on + strand at 3372.424 kb on + strand at 3372.425 kb on - strand at 3372.436 kb on + strand at 3372.502 kb on + strand at 3372.503 kb on - strand at 3372.503 kb on - strand at 3372.514 kb on + strand at 3372.514 kb on + strand at 3372.679 kb on + strand at 3372.680 kb on - strand at 3372.700 kb on + strand at 3372.717 kb on + strand, within AO353_15260 at 3372.722 kb on + strand, within AO353_15260 at 3372.723 kb on - strand, within AO353_15260 at 3372.871 kb on + strand, within AO353_15260 at 3372.871 kb on + strand, within AO353_15260 at 3372.954 kb on + strand, within AO353_15260 at 3373.128 kb on - strand, within AO353_15260 at 3373.137 kb on - strand, within AO353_15260 at 3373.137 kb on - strand, within AO353_15260 at 3373.198 kb on + strand, within AO353_15260 at 3373.198 kb on + strand, within AO353_15260 at 3373.198 kb on + strand, within AO353_15260 at 3373.198 kb on + strand, within AO353_15260 at 3373.198 kb on + strand, within AO353_15260 at 3373.198 kb on + strand, within AO353_15260 at 3373.198 kb on + strand, within AO353_15260 at 3373.198 kb on + strand, within AO353_15260 at 3373.198 kb on + strand, within AO353_15260 at 3373.198 kb on + strand, within AO353_15260 at 3373.198 kb on + strand, within AO353_15260 at 3373.198 kb on + strand, within AO353_15260 at 3373.199 kb on - strand, within AO353_15260 at 3373.199 kb on - strand, within AO353_15260 at 3373.199 kb on - strand, within AO353_15260 at 3373.199 kb on - strand, within AO353_15260 at 3373.199 kb on - strand, within AO353_15260 at 3373.199 kb on - strand, within AO353_15260 at 3373.199 kb on - strand, within AO353_15260 at 3373.274 kb on + strand at 3373.304 kb on + strand at 3373.304 kb on + strand at 3373.304 kb on + strand at 3373.304 kb on + strand at 3373.304 kb on + strand at 3373.304 kb on + strand at 3373.304 kb on + strand at 3373.305 kb on - strand at 3373.305 kb on - strand at 3373.305 kb on - strand at 3373.305 kb on - strand at 3373.305 kb on - strand at 3373.305 kb on - strand at 3373.305 kb on - strand at 3373.305 kb on - strand at 3373.322 kb on + strand at 3373.322 kb on + strand at 3373.322 kb on + strand at 3373.322 kb on + strand at 3373.322 kb on + strand at 3373.322 kb on + strand at 3373.323 kb on - strand at 3373.323 kb on - strand at 3373.323 kb on - strand at 3373.434 kb on + strand, within AO353_15265 at 3373.434 kb on + strand, within AO353_15265 at 3373.434 kb on + strand, within AO353_15265 at 3373.435 kb on - strand, within AO353_15265 at 3373.435 kb on - strand, within AO353_15265 at 3373.513 kb on + strand, within AO353_15265 at 3373.514 kb on - strand, within AO353_15265 at 3373.514 kb on - strand, within AO353_15265 at 3373.520 kb on + strand, within AO353_15265 at 3373.520 kb on + strand, within AO353_15265 at 3373.520 kb on + strand, within AO353_15265 at 3373.520 kb on + strand, within AO353_15265 at 3373.520 kb on + strand, within AO353_15265 at 3373.520 kb on + strand, within AO353_15265 at 3373.520 kb on + strand, within AO353_15265 at 3373.521 kb on - strand, within AO353_15265 at 3373.521 kb on - strand, within AO353_15265 at 3373.551 kb on - strand, within AO353_15265 at 3373.551 kb on - strand, within AO353_15265 at 3373.551 kb on - strand, within AO353_15265 at 3373.689 kb on + strand at 3373.690 kb on - strand at 3373.697 kb on + strand at 3373.698 kb on - strand at 3373.698 kb on - strand at 3373.698 kb on - strand at 3373.700 kb on + strand at 3373.700 kb on + strand at 3373.701 kb on - strand at 3373.701 kb on - strand at 3373.701 kb on - strand at 3373.748 kb on + strand at 3373.748 kb on + strand at 3373.748 kb on + strand at 3373.748 kb on + strand at 3373.748 kb on + strand at 3373.749 kb on - strand at 3373.749 kb on - strand at 3373.749 kb on - strand at 3373.757 kb on - strand at 3373.837 kb on - strand at 3373.848 kb on + strand at 3373.848 kb on + strand at 3373.849 kb on - strand at 3373.849 kb on - strand at 3373.849 kb on - strand at 3373.849 kb on - strand at 3373.874 kb on + strand at 3373.874 kb on + strand at 3373.875 kb on - strand at 3373.875 kb on - strand at 3373.944 kb on + strand, within AO353_15270 at 3373.944 kb on + strand, within AO353_15270 at 3373.944 kb on + strand, within AO353_15270 at 3373.945 kb on - strand, within AO353_15270 at 3373.945 kb on - strand, within AO353_15270 at 3373.945 kb on - strand, within AO353_15270 at 3373.945 kb on - strand, within AO353_15270 at 3373.945 kb on - strand, within AO353_15270 at 3373.945 kb on - strand, within AO353_15270 at 3373.951 kb on + strand, within AO353_15270 at 3374.219 kb on - strand, within AO353_15270
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 3,371,669 + -1.2 3,371,738 + -0.5 3,372,075 + AO353_15255 0.45 -0.3 3,372,109 + AO353_15255 0.50 +0.8 3,372,424 + +1.1 3,372,424 + -0.3 3,372,424 + +0.5 3,372,425 - -1.3 3,372,436 + -0.3 3,372,502 + +0.4 3,372,503 - +0.7 3,372,503 - -1.3 3,372,514 + -0.6 3,372,514 + +1.0 3,372,679 + +0.2 3,372,680 - -0.8 3,372,700 + -2.2 3,372,717 + AO353_15260 0.11 -0.8 3,372,722 + AO353_15260 0.11 +0.2 3,372,723 - AO353_15260 0.11 -1.0 3,372,871 + AO353_15260 0.35 +0.2 3,372,871 + AO353_15260 0.35 -0.2 3,372,954 + AO353_15260 0.49 -0.9 3,373,128 - AO353_15260 0.77 +0.1 3,373,137 - AO353_15260 0.78 -0.6 3,373,137 - AO353_15260 0.78 -0.3 3,373,198 + AO353_15260 0.88 -0.1 3,373,198 + AO353_15260 0.88 +0.4 3,373,198 + AO353_15260 0.88 -1.1 3,373,198 + AO353_15260 0.88 +0.2 3,373,198 + AO353_15260 0.88 +1.8 3,373,198 + AO353_15260 0.88 -0.8 3,373,198 + AO353_15260 0.88 -0.3 3,373,198 + AO353_15260 0.88 -0.5 3,373,198 + AO353_15260 0.88 -1.3 3,373,198 + AO353_15260 0.88 -0.2 3,373,198 + AO353_15260 0.88 -1.3 3,373,198 + AO353_15260 0.88 -0.3 3,373,199 - AO353_15260 0.89 -1.0 3,373,199 - AO353_15260 0.89 -0.9 3,373,199 - AO353_15260 0.89 +0.8 3,373,199 - AO353_15260 0.89 -1.5 3,373,199 - AO353_15260 0.89 -1.0 3,373,199 - AO353_15260 0.89 -0.6 3,373,199 - AO353_15260 0.89 -1.7 3,373,274 + -1.2 3,373,304 + -0.5 3,373,304 + -0.8 3,373,304 + -0.8 3,373,304 + -2.2 3,373,304 + -1.1 3,373,304 + -0.8 3,373,304 + -1.6 3,373,305 - -0.4 3,373,305 - -1.5 3,373,305 - -0.4 3,373,305 - -1.7 3,373,305 - -0.8 3,373,305 - +0.4 3,373,305 - -0.1 3,373,305 - +0.1 3,373,322 + -0.3 3,373,322 + +1.8 3,373,322 + -0.8 3,373,322 + -0.3 3,373,322 + +0.2 3,373,322 + -0.3 3,373,323 - -0.1 3,373,323 - -1.9 3,373,323 - -1.7 3,373,434 + AO353_15265 0.36 -0.9 3,373,434 + AO353_15265 0.36 -0.7 3,373,434 + AO353_15265 0.36 +0.8 3,373,435 - AO353_15265 0.36 -0.3 3,373,435 - AO353_15265 0.36 -1.4 3,373,513 + AO353_15265 0.55 -0.2 3,373,514 - AO353_15265 0.55 -1.1 3,373,514 - AO353_15265 0.55 -1.5 3,373,520 + AO353_15265 0.57 +0.3 3,373,520 + AO353_15265 0.57 -0.1 3,373,520 + AO353_15265 0.57 +1.2 3,373,520 + AO353_15265 0.57 -1.8 3,373,520 + AO353_15265 0.57 -0.5 3,373,520 + AO353_15265 0.57 +1.2 3,373,520 + AO353_15265 0.57 -0.3 3,373,521 - AO353_15265 0.57 -1.5 3,373,521 - AO353_15265 0.57 -1.0 3,373,551 - AO353_15265 0.64 -1.8 3,373,551 - AO353_15265 0.64 -1.4 3,373,551 - AO353_15265 0.64 -0.3 3,373,689 + -1.6 3,373,690 - -0.2 3,373,697 + +0.2 3,373,698 - -0.2 3,373,698 - -1.4 3,373,698 - -0.9 3,373,700 + -0.6 3,373,700 + -0.1 3,373,701 - +0.4 3,373,701 - -1.5 3,373,701 - -0.1 3,373,748 + -1.8 3,373,748 + +0.2 3,373,748 + +0.2 3,373,748 + -1.3 3,373,748 + -1.4 3,373,749 - +0.0 3,373,749 - +0.6 3,373,749 - +0.3 3,373,757 - +0.6 3,373,837 - +0.4 3,373,848 + +0.1 3,373,848 + +0.3 3,373,849 - -0.3 3,373,849 - +0.0 3,373,849 - +0.2 3,373,849 - +0.8 3,373,874 + -0.2 3,373,874 + -1.4 3,373,875 - -1.4 3,373,875 - -2.2 3,373,944 + AO353_15270 0.18 +0.4 3,373,944 + AO353_15270 0.18 -0.5 3,373,944 + AO353_15270 0.18 -1.6 3,373,945 - AO353_15270 0.18 -0.5 3,373,945 - AO353_15270 0.18 +1.5 3,373,945 - AO353_15270 0.18 -1.7 3,373,945 - AO353_15270 0.18 +0.4 3,373,945 - AO353_15270 0.18 +0.4 3,373,945 - AO353_15270 0.18 -2.0 3,373,951 + AO353_15270 0.20 -0.8 3,374,219 - AO353_15270 0.66 -1.3
Or see this region's nucleotide sequence