Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_14150

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_14140 and AO353_14145 overlap by 8 nucleotidesAO353_14145 and AO353_14150 overlap by 8 nucleotidesAO353_14150 and AO353_14155 are separated by 133 nucleotides AO353_14140: AO353_14140 - isoleucine--tRNA ligase, at 3,140,727 to 3,143,558 _14140 AO353_14145: AO353_14145 - signal peptidase II, at 3,143,551 to 3,144,063 _14145 AO353_14150: AO353_14150 - peptidylprolyl isomerase, at 3,144,056 to 3,144,508 _14150 AO353_14155: AO353_14155 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 3,144,642 to 3,145,589 _14155 Position (kb) 3144 3145Strain fitness (log2 ratio) -1 0 1at 3144.021 kb on + strandat 3144.021 kb on + strandat 3144.021 kb on + strandat 3144.021 kb on + strandat 3144.069 kb on + strandat 3144.154 kb on + strand, within AO353_14150at 3144.253 kb on + strand, within AO353_14150at 3144.253 kb on + strand, within AO353_14150at 3144.480 kb on + strandat 3144.480 kb on + strandat 3144.506 kb on + strandat 3144.506 kb on + strandat 3144.506 kb on + strandat 3144.513 kb on + strandat 3144.610 kb on + strandat 3144.610 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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3,144,021 + +1.1
3,144,021 + +0.9
3,144,021 + +0.4
3,144,021 + +0.0
3,144,069 + -0.6
3,144,154 + AO353_14150 0.22 -1.0
3,144,253 + AO353_14150 0.43 -0.8
3,144,253 + AO353_14150 0.43 -0.1
3,144,480 + -1.5
3,144,480 + -0.2
3,144,506 + +0.8
3,144,506 + +0.1
3,144,506 + +0.6
3,144,513 + +0.4
3,144,610 + -0.4
3,144,610 + -0.5

Or see this region's nucleotide sequence