Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_13685

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_13675 and AO353_13680 are separated by 17 nucleotidesAO353_13680 and AO353_13685 are separated by 48 nucleotidesAO353_13685 and AO353_13690 are separated by 131 nucleotides AO353_13675: AO353_13675 - acetyl-CoA carboxylase biotin carboxylase subunit, at 3,037,247 to 3,038,608 _13675 AO353_13680: AO353_13680 - acetyl-CoA carboxylase biotin carboxyl carrier protein subunit, at 3,038,626 to 3,039,090 _13680 AO353_13685: AO353_13685 - 3-dehydroquinate dehydratase, at 3,039,139 to 3,039,591 _13685 AO353_13690: AO353_13690 - thiol:disulfide interchange protein, at 3,039,723 to 3,041,486 _13690 Position (kb) 3039 3040Strain fitness (log2 ratio) -2 -1 0 1 2at 3039.246 kb on - strand, within AO353_13685at 3039.246 kb on - strand, within AO353_13685at 3039.246 kb on - strand, within AO353_13685at 3039.246 kb on - strand, within AO353_13685at 3039.283 kb on - strand, within AO353_13685at 3039.335 kb on - strand, within AO353_13685at 3039.335 kb on - strand, within AO353_13685at 3039.349 kb on - strand, within AO353_13685at 3039.349 kb on - strand, within AO353_13685at 3039.349 kb on - strand, within AO353_13685at 3039.349 kb on - strand, within AO353_13685at 3039.349 kb on - strand, within AO353_13685at 3039.349 kb on - strand, within AO353_13685at 3039.349 kb on - strand, within AO353_13685at 3039.349 kb on - strand, within AO353_13685at 3039.355 kb on - strand, within AO353_13685at 3039.429 kb on - strand, within AO353_13685at 3039.450 kb on - strand, within AO353_13685at 3039.524 kb on + strandat 3039.607 kb on - strandat 3039.607 kb on - strandat 3039.620 kb on + strandat 3039.621 kb on - strandat 3039.621 kb on - strandat 3039.621 kb on - strandat 3039.676 kb on + strandat 3039.676 kb on + strandat 3039.676 kb on + strandat 3039.708 kb on + strandat 3039.743 kb on + strandat 3039.856 kb on + strandat 3039.856 kb on + strandat 3039.926 kb on + strand, within AO353_13690at 3039.926 kb on + strand, within AO353_13690at 3039.954 kb on - strand, within AO353_13690at 3040.001 kb on - strand, within AO353_13690at 3040.184 kb on - strand, within AO353_13690at 3040.184 kb on - strand, within AO353_13690at 3040.184 kb on - strand, within AO353_13690at 3040.202 kb on - strand, within AO353_13690at 3040.202 kb on - strand, within AO353_13690at 3040.216 kb on - strand, within AO353_13690at 3040.216 kb on - strand, within AO353_13690at 3040.216 kb on - strand, within AO353_13690at 3040.253 kb on + strand, within AO353_13690at 3040.253 kb on + strand, within AO353_13690at 3040.254 kb on - strand, within AO353_13690at 3040.254 kb on - strand, within AO353_13690at 3040.254 kb on - strand, within AO353_13690at 3040.254 kb on - strand, within AO353_13690at 3040.255 kb on + strand, within AO353_13690at 3040.256 kb on - strand, within AO353_13690at 3040.399 kb on + strand, within AO353_13690at 3040.399 kb on + strand, within AO353_13690at 3040.399 kb on + strand, within AO353_13690at 3040.399 kb on + strand, within AO353_13690at 3040.400 kb on - strand, within AO353_13690at 3040.400 kb on - strand, within AO353_13690at 3040.400 kb on - strand, within AO353_13690at 3040.400 kb on - strand, within AO353_13690at 3040.400 kb on - strand, within AO353_13690at 3040.400 kb on - strand, within AO353_13690at 3040.400 kb on - strand, within AO353_13690at 3040.530 kb on + strand, within AO353_13690at 3040.530 kb on + strand, within AO353_13690at 3040.530 kb on + strand, within AO353_13690at 3040.530 kb on + strand, within AO353_13690at 3040.530 kb on + strand, within AO353_13690at 3040.530 kb on + strand, within AO353_13690at 3040.530 kb on + strand, within AO353_13690at 3040.530 kb on + strand, within AO353_13690at 3040.530 kb on + strand, within AO353_13690at 3040.530 kb on + strand, within AO353_13690at 3040.530 kb on + strand, within AO353_13690at 3040.530 kb on + strand, within AO353_13690at 3040.530 kb on + strand, within AO353_13690at 3040.531 kb on - strand, within AO353_13690at 3040.531 kb on - strand, within AO353_13690at 3040.531 kb on - strand, within AO353_13690at 3040.531 kb on - strand, within AO353_13690at 3040.531 kb on - strand, within AO353_13690at 3040.531 kb on - strand, within AO353_13690at 3040.531 kb on - strand, within AO353_13690at 3040.531 kb on - strand, within AO353_13690at 3040.531 kb on - strand, within AO353_13690at 3040.531 kb on - strand, within AO353_13690at 3040.531 kb on - strand, within AO353_13690at 3040.531 kb on - strand, within AO353_13690at 3040.532 kb on + strand, within AO353_13690at 3040.532 kb on + strand, within AO353_13690at 3040.532 kb on + strand, within AO353_13690at 3040.532 kb on + strand, within AO353_13690at 3040.532 kb on + strand, within AO353_13690at 3040.532 kb on + strand, within AO353_13690at 3040.532 kb on + strand, within AO353_13690at 3040.532 kb on + strand, within AO353_13690at 3040.532 kb on + strand, within AO353_13690at 3040.532 kb on + strand, within AO353_13690at 3040.532 kb on + strand, within AO353_13690at 3040.532 kb on + strand, within AO353_13690at 3040.532 kb on + strand, within AO353_13690at 3040.532 kb on + strand, within AO353_13690at 3040.532 kb on + strand, within AO353_13690at 3040.533 kb on - strand, within AO353_13690at 3040.533 kb on - strand, within AO353_13690at 3040.533 kb on - strand, within AO353_13690at 3040.533 kb on - strand, within AO353_13690at 3040.533 kb on - strand, within AO353_13690at 3040.533 kb on - strand, within AO353_13690at 3040.533 kb on - strand, within AO353_13690at 3040.533 kb on - strand, within AO353_13690at 3040.533 kb on - strand, within AO353_13690at 3040.533 kb on - strand, within AO353_13690at 3040.533 kb on - strand, within AO353_13690at 3040.533 kb on - strand, within AO353_13690at 3040.533 kb on - strand, within AO353_13690at 3040.533 kb on - strand, within AO353_13690at 3040.533 kb on - strand, within AO353_13690at 3040.533 kb on - strand, within AO353_13690at 3040.533 kb on - strand, within AO353_13690at 3040.533 kb on - strand, within AO353_13690at 3040.533 kb on - strand, within AO353_13690at 3040.534 kb on + strand, within AO353_13690at 3040.534 kb on + strand, within AO353_13690at 3040.534 kb on + strand, within AO353_13690at 3040.534 kb on + strand, within AO353_13690at 3040.534 kb on + strand, within AO353_13690at 3040.534 kb on + strand, within AO353_13690at 3040.534 kb on + strand, within AO353_13690at 3040.534 kb on + strand, within AO353_13690at 3040.534 kb on + strand, within AO353_13690at 3040.534 kb on + strand, within AO353_13690at 3040.534 kb on + strand, within AO353_13690at 3040.534 kb on + strand, within AO353_13690at 3040.534 kb on + strand, within AO353_13690at 3040.534 kb on + strand, within AO353_13690at 3040.535 kb on - strand, within AO353_13690at 3040.535 kb on - strand, within AO353_13690at 3040.535 kb on - strand, within AO353_13690at 3040.535 kb on - strand, within AO353_13690at 3040.535 kb on - strand, within AO353_13690at 3040.535 kb on - strand, within AO353_13690at 3040.535 kb on - strand, within AO353_13690at 3040.535 kb on - strand, within AO353_13690at 3040.563 kb on + strand, within AO353_13690at 3040.563 kb on + strand, within AO353_13690at 3040.563 kb on + strand, within AO353_13690at 3040.563 kb on + strand, within AO353_13690at 3040.564 kb on - strand, within AO353_13690at 3040.564 kb on - strand, within AO353_13690at 3040.564 kb on - strand, within AO353_13690

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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3,039,246 - AO353_13685 0.24 +0.4
3,039,246 - AO353_13685 0.24 -0.9
3,039,246 - AO353_13685 0.24 -0.7
3,039,246 - AO353_13685 0.24 -1.1
3,039,283 - AO353_13685 0.32 -1.6
3,039,335 - AO353_13685 0.43 -0.4
3,039,335 - AO353_13685 0.43 -2.5
3,039,349 - AO353_13685 0.46 -1.3
3,039,349 - AO353_13685 0.46 +0.0
3,039,349 - AO353_13685 0.46 -0.4
3,039,349 - AO353_13685 0.46 -1.9
3,039,349 - AO353_13685 0.46 -1.8
3,039,349 - AO353_13685 0.46 -1.6
3,039,349 - AO353_13685 0.46 -0.8
3,039,349 - AO353_13685 0.46 -0.6
3,039,355 - AO353_13685 0.48 -0.9
3,039,429 - AO353_13685 0.64 +0.5
3,039,450 - AO353_13685 0.69 -1.1
3,039,524 + +0.6
3,039,607 - -1.4
3,039,607 - +0.5
3,039,620 + +1.1
3,039,621 - -0.6
3,039,621 - -2.3
3,039,621 - -0.1
3,039,676 + +1.5
3,039,676 + -1.5
3,039,676 + -1.0
3,039,708 + -0.3
3,039,743 + -0.3
3,039,856 + -0.9
3,039,856 + -1.1
3,039,926 + AO353_13690 0.12 +0.5
3,039,926 + AO353_13690 0.12 -0.4
3,039,954 - AO353_13690 0.13 +0.7
3,040,001 - AO353_13690 0.16 +0.9
3,040,184 - AO353_13690 0.26 -1.4
3,040,184 - AO353_13690 0.26 -0.9
3,040,184 - AO353_13690 0.26 -0.4
3,040,202 - AO353_13690 0.27 -0.3
3,040,202 - AO353_13690 0.27 -0.1
3,040,216 - AO353_13690 0.28 +0.5
3,040,216 - AO353_13690 0.28 -0.4
3,040,216 - AO353_13690 0.28 -1.4
3,040,253 + AO353_13690 0.30 -0.9
3,040,253 + AO353_13690 0.30 -0.1
3,040,254 - AO353_13690 0.30 -0.1
3,040,254 - AO353_13690 0.30 +0.8
3,040,254 - AO353_13690 0.30 +0.5
3,040,254 - AO353_13690 0.30 -1.1
3,040,255 + AO353_13690 0.30 -0.8
3,040,256 - AO353_13690 0.30 -1.4
3,040,399 + AO353_13690 0.38 +0.6
3,040,399 + AO353_13690 0.38 -0.3
3,040,399 + AO353_13690 0.38 +1.6
3,040,399 + AO353_13690 0.38 -0.1
3,040,400 - AO353_13690 0.38 +1.1
3,040,400 - AO353_13690 0.38 -0.3
3,040,400 - AO353_13690 0.38 +0.5
3,040,400 - AO353_13690 0.38 -0.9
3,040,400 - AO353_13690 0.38 +1.4
3,040,400 - AO353_13690 0.38 +0.3
3,040,400 - AO353_13690 0.38 -0.1
3,040,530 + AO353_13690 0.46 +0.1
3,040,530 + AO353_13690 0.46 +1.0
3,040,530 + AO353_13690 0.46 -0.7
3,040,530 + AO353_13690 0.46 -0.4
3,040,530 + AO353_13690 0.46 -1.0
3,040,530 + AO353_13690 0.46 -1.3
3,040,530 + AO353_13690 0.46 +0.4
3,040,530 + AO353_13690 0.46 +0.4
3,040,530 + AO353_13690 0.46 +1.3
3,040,530 + AO353_13690 0.46 +0.1
3,040,530 + AO353_13690 0.46 -1.5
3,040,530 + AO353_13690 0.46 -0.4
3,040,530 + AO353_13690 0.46 +0.3
3,040,531 - AO353_13690 0.46 -0.3
3,040,531 - AO353_13690 0.46 +0.2
3,040,531 - AO353_13690 0.46 +1.5
3,040,531 - AO353_13690 0.46 -0.5
3,040,531 - AO353_13690 0.46 +0.1
3,040,531 - AO353_13690 0.46 -1.4
3,040,531 - AO353_13690 0.46 -0.2
3,040,531 - AO353_13690 0.46 -0.8
3,040,531 - AO353_13690 0.46 -0.6
3,040,531 - AO353_13690 0.46 -1.9
3,040,531 - AO353_13690 0.46 +0.4
3,040,531 - AO353_13690 0.46 -1.5
3,040,532 + AO353_13690 0.46 -0.4
3,040,532 + AO353_13690 0.46 +0.4
3,040,532 + AO353_13690 0.46 +0.6
3,040,532 + AO353_13690 0.46 -0.1
3,040,532 + AO353_13690 0.46 +0.0
3,040,532 + AO353_13690 0.46 +0.5
3,040,532 + AO353_13690 0.46 +0.7
3,040,532 + AO353_13690 0.46 -1.0
3,040,532 + AO353_13690 0.46 +0.5
3,040,532 + AO353_13690 0.46 -0.5
3,040,532 + AO353_13690 0.46 -0.5
3,040,532 + AO353_13690 0.46 -1.1
3,040,532 + AO353_13690 0.46 +1.2
3,040,532 + AO353_13690 0.46 -0.6
3,040,532 + AO353_13690 0.46 +0.0
3,040,533 - AO353_13690 0.46 -1.1
3,040,533 - AO353_13690 0.46 -1.4
3,040,533 - AO353_13690 0.46 +0.2
3,040,533 - AO353_13690 0.46 +0.1
3,040,533 - AO353_13690 0.46 +1.0
3,040,533 - AO353_13690 0.46 -1.9
3,040,533 - AO353_13690 0.46 +0.2
3,040,533 - AO353_13690 0.46 +0.4
3,040,533 - AO353_13690 0.46 -0.7
3,040,533 - AO353_13690 0.46 +1.8
3,040,533 - AO353_13690 0.46 +1.1
3,040,533 - AO353_13690 0.46 +0.9
3,040,533 - AO353_13690 0.46 +1.2
3,040,533 - AO353_13690 0.46 +1.4
3,040,533 - AO353_13690 0.46 -0.1
3,040,533 - AO353_13690 0.46 -0.6
3,040,533 - AO353_13690 0.46 +0.5
3,040,533 - AO353_13690 0.46 -0.9
3,040,533 - AO353_13690 0.46 +0.5
3,040,534 + AO353_13690 0.46 -0.8
3,040,534 + AO353_13690 0.46 +1.0
3,040,534 + AO353_13690 0.46 +0.0
3,040,534 + AO353_13690 0.46 +0.4
3,040,534 + AO353_13690 0.46 -1.8
3,040,534 + AO353_13690 0.46 -0.7
3,040,534 + AO353_13690 0.46 +1.1
3,040,534 + AO353_13690 0.46 -1.2
3,040,534 + AO353_13690 0.46 -0.3
3,040,534 + AO353_13690 0.46 -0.5
3,040,534 + AO353_13690 0.46 +0.3
3,040,534 + AO353_13690 0.46 +1.2
3,040,534 + AO353_13690 0.46 +1.6
3,040,534 + AO353_13690 0.46 +0.2
3,040,535 - AO353_13690 0.46 -0.7
3,040,535 - AO353_13690 0.46 -1.1
3,040,535 - AO353_13690 0.46 +0.6
3,040,535 - AO353_13690 0.46 -0.5
3,040,535 - AO353_13690 0.46 -0.2
3,040,535 - AO353_13690 0.46 -0.2
3,040,535 - AO353_13690 0.46 -2.4
3,040,535 - AO353_13690 0.46 -1.3
3,040,563 + AO353_13690 0.48 +0.5
3,040,563 + AO353_13690 0.48 -0.9
3,040,563 + AO353_13690 0.48 -1.6
3,040,563 + AO353_13690 0.48 -1.7
3,040,564 - AO353_13690 0.48 +1.4
3,040,564 - AO353_13690 0.48 -0.1
3,040,564 - AO353_13690 0.48 +0.3

Or see this region's nucleotide sequence