Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_12395 and AO353_12400 are separated by 231 nucleotides AO353_12400 and AO353_12405 are separated by 62 nucleotides
AO353_12395: AO353_12395 - poly(3-hydroxyalkanoate) granule-associated protein PhaF, at 2,724,769 to 2,725,569
_12395
AO353_12400: AO353_12400 - TetR family transcriptional regulator, at 2,725,801 to 2,726,421
_12400
AO353_12405: AO353_12405 - poly(R)-hydroxyalkanoic acid synthase, at 2,726,484 to 2,728,166
_12405
Position (kb)
2725
2726
2727 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2724.829 kb on + strand at 2724.829 kb on + strand at 2724.829 kb on + strand at 2724.857 kb on + strand, within AO353_12395 at 2724.857 kb on + strand, within AO353_12395 at 2725.200 kb on + strand, within AO353_12395 at 2725.200 kb on + strand, within AO353_12395 at 2725.228 kb on - strand, within AO353_12395 at 2725.311 kb on + strand, within AO353_12395 at 2725.312 kb on - strand, within AO353_12395 at 2725.312 kb on - strand, within AO353_12395 at 2725.407 kb on - strand, within AO353_12395 at 2725.533 kb on - strand at 2725.658 kb on + strand at 2725.659 kb on - strand at 2725.698 kb on + strand at 2725.717 kb on + strand at 2725.717 kb on + strand at 2725.717 kb on + strand at 2725.718 kb on - strand at 2725.718 kb on - strand at 2725.718 kb on - strand at 2725.718 kb on - strand at 2725.724 kb on + strand at 2725.724 kb on + strand at 2725.724 kb on + strand at 2725.724 kb on + strand at 2725.724 kb on + strand at 2725.724 kb on + strand at 2725.724 kb on + strand at 2725.724 kb on + strand at 2725.725 kb on - strand at 2725.725 kb on - strand at 2725.725 kb on - strand at 2725.725 kb on - strand at 2725.725 kb on - strand at 2725.725 kb on - strand at 2725.725 kb on - strand at 2725.820 kb on + strand at 2725.820 kb on + strand at 2725.821 kb on - strand at 2725.821 kb on - strand at 2725.821 kb on - strand at 2725.895 kb on + strand, within AO353_12400 at 2725.896 kb on - strand, within AO353_12400 at 2725.896 kb on - strand, within AO353_12400 at 2725.940 kb on + strand, within AO353_12400 at 2725.940 kb on + strand, within AO353_12400 at 2726.147 kb on + strand, within AO353_12400 at 2726.190 kb on - strand, within AO353_12400 at 2726.300 kb on + strand, within AO353_12400 at 2726.300 kb on + strand, within AO353_12400 at 2726.300 kb on + strand, within AO353_12400 at 2726.300 kb on + strand, within AO353_12400 at 2726.301 kb on - strand, within AO353_12400 at 2726.301 kb on - strand, within AO353_12400 at 2726.301 kb on - strand, within AO353_12400 at 2726.301 kb on - strand, within AO353_12400 at 2726.303 kb on + strand, within AO353_12400 at 2726.303 kb on + strand, within AO353_12400 at 2726.303 kb on + strand, within AO353_12400 at 2726.303 kb on + strand, within AO353_12400 at 2726.303 kb on + strand, within AO353_12400 at 2726.303 kb on + strand, within AO353_12400 at 2726.303 kb on + strand, within AO353_12400 at 2726.303 kb on + strand, within AO353_12400 at 2726.303 kb on + strand, within AO353_12400 at 2726.303 kb on + strand, within AO353_12400 at 2726.303 kb on + strand, within AO353_12400 at 2726.303 kb on + strand, within AO353_12400 at 2726.304 kb on - strand, within AO353_12400 at 2726.304 kb on - strand, within AO353_12400 at 2726.304 kb on - strand, within AO353_12400 at 2726.349 kb on + strand, within AO353_12400 at 2726.349 kb on + strand, within AO353_12400 at 2726.350 kb on - strand, within AO353_12400 at 2726.350 kb on - strand, within AO353_12400 at 2726.350 kb on - strand, within AO353_12400 at 2726.432 kb on + strand at 2726.433 kb on - strand at 2726.433 kb on - strand at 2726.491 kb on - strand at 2726.500 kb on + strand at 2726.500 kb on + strand at 2726.500 kb on + strand at 2726.500 kb on + strand at 2726.501 kb on - strand at 2726.501 kb on - strand at 2726.501 kb on - strand at 2726.501 kb on - strand at 2726.501 kb on - strand at 2726.501 kb on - strand at 2726.501 kb on - strand at 2726.501 kb on - strand at 2726.501 kb on - strand at 2726.501 kb on - strand at 2726.501 kb on - strand at 2726.501 kb on - strand at 2726.501 kb on - strand at 2726.501 kb on - strand at 2726.530 kb on + strand at 2726.530 kb on + strand at 2726.530 kb on + strand at 2726.530 kb on + strand at 2726.530 kb on + strand at 2726.530 kb on + strand at 2726.530 kb on + strand at 2726.530 kb on + strand at 2726.530 kb on + strand at 2726.531 kb on - strand at 2726.531 kb on - strand at 2726.531 kb on - strand at 2726.531 kb on - strand at 2726.639 kb on - strand at 2726.642 kb on - strand at 2726.642 kb on - strand at 2726.683 kb on + strand, within AO353_12405 at 2726.683 kb on + strand, within AO353_12405 at 2726.683 kb on + strand, within AO353_12405 at 2726.683 kb on + strand, within AO353_12405 at 2726.683 kb on + strand, within AO353_12405 at 2726.683 kb on + strand, within AO353_12405 at 2726.683 kb on + strand, within AO353_12405 at 2726.683 kb on + strand, within AO353_12405 at 2726.683 kb on + strand, within AO353_12405 at 2726.683 kb on + strand, within AO353_12405 at 2726.684 kb on - strand, within AO353_12405 at 2726.684 kb on - strand, within AO353_12405 at 2726.684 kb on - strand, within AO353_12405 at 2726.684 kb on - strand, within AO353_12405 at 2726.684 kb on - strand, within AO353_12405 at 2727.017 kb on - strand, within AO353_12405 at 2727.017 kb on - strand, within AO353_12405 at 2727.017 kb on - strand, within AO353_12405 at 2727.017 kb on - strand, within AO353_12405 at 2727.017 kb on - strand, within AO353_12405 at 2727.017 kb on - strand, within AO353_12405 at 2727.069 kb on + strand, within AO353_12405 at 2727.199 kb on + strand, within AO353_12405 at 2727.199 kb on + strand, within AO353_12405 at 2727.199 kb on + strand, within AO353_12405 at 2727.199 kb on + strand, within AO353_12405 at 2727.199 kb on + strand, within AO353_12405 at 2727.199 kb on + strand, within AO353_12405 at 2727.200 kb on - strand, within AO353_12405 at 2727.200 kb on - strand, within AO353_12405 at 2727.200 kb on - strand, within AO353_12405 at 2727.200 kb on - strand, within AO353_12405 at 2727.200 kb on - strand, within AO353_12405 at 2727.200 kb on - strand, within AO353_12405 at 2727.200 kb on - strand, within AO353_12405 at 2727.200 kb on - strand, within AO353_12405 at 2727.358 kb on + strand, within AO353_12405 at 2727.358 kb on + strand, within AO353_12405 at 2727.359 kb on - strand, within AO353_12405
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 2,724,829 + -0.3 2,724,829 + -1.0 2,724,829 + +0.3 2,724,857 + AO353_12395 0.11 -1.2 2,724,857 + AO353_12395 0.11 +0.7 2,725,200 + AO353_12395 0.54 +0.7 2,725,200 + AO353_12395 0.54 +0.2 2,725,228 - AO353_12395 0.57 -1.4 2,725,311 + AO353_12395 0.68 -0.5 2,725,312 - AO353_12395 0.68 +0.5 2,725,312 - AO353_12395 0.68 -0.8 2,725,407 - AO353_12395 0.80 +0.3 2,725,533 - -1.6 2,725,658 + +1.9 2,725,659 - -2.3 2,725,698 + -0.1 2,725,717 + -1.1 2,725,717 + +0.1 2,725,717 + -1.1 2,725,718 - -1.4 2,725,718 - +0.1 2,725,718 - +0.8 2,725,718 - -0.0 2,725,724 + -0.7 2,725,724 + +0.2 2,725,724 + +1.6 2,725,724 + +0.8 2,725,724 + -0.1 2,725,724 + -0.5 2,725,724 + +1.0 2,725,724 + +2.0 2,725,725 - -1.9 2,725,725 - -0.2 2,725,725 - -0.8 2,725,725 - +0.5 2,725,725 - -0.3 2,725,725 - -1.3 2,725,725 - +0.7 2,725,820 + -0.8 2,725,820 + -1.4 2,725,821 - -1.7 2,725,821 - -0.7 2,725,821 - -2.8 2,725,895 + AO353_12400 0.15 -1.3 2,725,896 - AO353_12400 0.15 -1.4 2,725,896 - AO353_12400 0.15 +0.8 2,725,940 + AO353_12400 0.22 +1.0 2,725,940 + AO353_12400 0.22 -0.5 2,726,147 + AO353_12400 0.56 -0.3 2,726,190 - AO353_12400 0.63 +1.0 2,726,300 + AO353_12400 0.80 -1.5 2,726,300 + AO353_12400 0.80 -0.8 2,726,300 + AO353_12400 0.80 -0.6 2,726,300 + AO353_12400 0.80 -1.2 2,726,301 - AO353_12400 0.81 +0.7 2,726,301 - AO353_12400 0.81 +0.2 2,726,301 - AO353_12400 0.81 -0.3 2,726,301 - AO353_12400 0.81 -0.1 2,726,303 + AO353_12400 0.81 -0.5 2,726,303 + AO353_12400 0.81 +0.8 2,726,303 + AO353_12400 0.81 -3.5 2,726,303 + AO353_12400 0.81 -0.3 2,726,303 + AO353_12400 0.81 -1.0 2,726,303 + AO353_12400 0.81 -0.0 2,726,303 + AO353_12400 0.81 +0.2 2,726,303 + AO353_12400 0.81 +0.3 2,726,303 + AO353_12400 0.81 +0.6 2,726,303 + AO353_12400 0.81 +1.2 2,726,303 + AO353_12400 0.81 -1.4 2,726,303 + AO353_12400 0.81 -1.2 2,726,304 - AO353_12400 0.81 -0.4 2,726,304 - AO353_12400 0.81 -0.4 2,726,304 - AO353_12400 0.81 -1.7 2,726,349 + AO353_12400 0.88 +0.4 2,726,349 + AO353_12400 0.88 -2.1 2,726,350 - AO353_12400 0.88 -0.8 2,726,350 - AO353_12400 0.88 +0.3 2,726,350 - AO353_12400 0.88 -0.7 2,726,432 + -0.3 2,726,433 - -0.1 2,726,433 - -1.8 2,726,491 - -0.0 2,726,500 + -0.7 2,726,500 + -0.1 2,726,500 + +0.1 2,726,500 + +0.5 2,726,501 - +0.4 2,726,501 - -0.1 2,726,501 - -0.1 2,726,501 - -0.1 2,726,501 - -0.1 2,726,501 - +0.3 2,726,501 - -1.0 2,726,501 - +1.2 2,726,501 - +1.6 2,726,501 - +0.6 2,726,501 - +0.1 2,726,501 - +1.0 2,726,501 - +0.3 2,726,501 - +1.4 2,726,530 + -0.1 2,726,530 + -0.3 2,726,530 + +1.2 2,726,530 + +1.3 2,726,530 + +0.4 2,726,530 + -0.1 2,726,530 + -0.0 2,726,530 + -0.6 2,726,530 + -0.1 2,726,531 - +0.1 2,726,531 - -0.4 2,726,531 - +1.7 2,726,531 - -1.2 2,726,639 - +1.2 2,726,642 - +0.0 2,726,642 - -0.1 2,726,683 + AO353_12405 0.12 -1.7 2,726,683 + AO353_12405 0.12 +1.6 2,726,683 + AO353_12405 0.12 +0.1 2,726,683 + AO353_12405 0.12 +0.9 2,726,683 + AO353_12405 0.12 +0.4 2,726,683 + AO353_12405 0.12 -0.3 2,726,683 + AO353_12405 0.12 +0.5 2,726,683 + AO353_12405 0.12 +0.8 2,726,683 + AO353_12405 0.12 +0.3 2,726,683 + AO353_12405 0.12 -0.8 2,726,684 - AO353_12405 0.12 -0.5 2,726,684 - AO353_12405 0.12 -0.1 2,726,684 - AO353_12405 0.12 -0.3 2,726,684 - AO353_12405 0.12 +1.2 2,726,684 - AO353_12405 0.12 -0.4 2,727,017 - AO353_12405 0.32 +0.5 2,727,017 - AO353_12405 0.32 +1.1 2,727,017 - AO353_12405 0.32 -1.8 2,727,017 - AO353_12405 0.32 -1.3 2,727,017 - AO353_12405 0.32 +1.6 2,727,017 - AO353_12405 0.32 +0.9 2,727,069 + AO353_12405 0.35 +2.6 2,727,199 + AO353_12405 0.42 +0.2 2,727,199 + AO353_12405 0.42 +0.6 2,727,199 + AO353_12405 0.42 -1.3 2,727,199 + AO353_12405 0.42 +0.6 2,727,199 + AO353_12405 0.42 +1.0 2,727,199 + AO353_12405 0.42 -0.3 2,727,200 - AO353_12405 0.43 -0.9 2,727,200 - AO353_12405 0.43 -0.7 2,727,200 - AO353_12405 0.43 +0.6 2,727,200 - AO353_12405 0.43 -1.1 2,727,200 - AO353_12405 0.43 -0.7 2,727,200 - AO353_12405 0.43 +1.1 2,727,200 - AO353_12405 0.43 +0.4 2,727,200 - AO353_12405 0.43 +0.0 2,727,358 + AO353_12405 0.52 +0.1 2,727,358 + AO353_12405 0.52 +0.3 2,727,359 - AO353_12405 0.52 +0.4
Or see this region's nucleotide sequence