Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_12400

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_12395 and AO353_12400 are separated by 231 nucleotidesAO353_12400 and AO353_12405 are separated by 62 nucleotides AO353_12395: AO353_12395 - poly(3-hydroxyalkanoate) granule-associated protein PhaF, at 2,724,769 to 2,725,569 _12395 AO353_12400: AO353_12400 - TetR family transcriptional regulator, at 2,725,801 to 2,726,421 _12400 AO353_12405: AO353_12405 - poly(R)-hydroxyalkanoic acid synthase, at 2,726,484 to 2,728,166 _12405 Position (kb) 2725 2726 2727Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2724.829 kb on + strandat 2724.829 kb on + strandat 2724.829 kb on + strandat 2724.857 kb on + strand, within AO353_12395at 2724.857 kb on + strand, within AO353_12395at 2725.200 kb on + strand, within AO353_12395at 2725.200 kb on + strand, within AO353_12395at 2725.228 kb on - strand, within AO353_12395at 2725.311 kb on + strand, within AO353_12395at 2725.312 kb on - strand, within AO353_12395at 2725.312 kb on - strand, within AO353_12395at 2725.407 kb on - strand, within AO353_12395at 2725.533 kb on - strandat 2725.658 kb on + strandat 2725.659 kb on - strandat 2725.698 kb on + strandat 2725.717 kb on + strandat 2725.717 kb on + strandat 2725.717 kb on + strandat 2725.718 kb on - strandat 2725.718 kb on - strandat 2725.718 kb on - strandat 2725.718 kb on - strandat 2725.724 kb on + strandat 2725.724 kb on + strandat 2725.724 kb on + strandat 2725.724 kb on + strandat 2725.724 kb on + strandat 2725.724 kb on + strandat 2725.724 kb on + strandat 2725.724 kb on + strandat 2725.725 kb on - strandat 2725.725 kb on - strandat 2725.725 kb on - strandat 2725.725 kb on - strandat 2725.725 kb on - strandat 2725.725 kb on - strandat 2725.725 kb on - strandat 2725.820 kb on + strandat 2725.820 kb on + strandat 2725.821 kb on - strandat 2725.821 kb on - strandat 2725.821 kb on - strandat 2725.895 kb on + strand, within AO353_12400at 2725.896 kb on - strand, within AO353_12400at 2725.896 kb on - strand, within AO353_12400at 2725.940 kb on + strand, within AO353_12400at 2725.940 kb on + strand, within AO353_12400at 2726.147 kb on + strand, within AO353_12400at 2726.190 kb on - strand, within AO353_12400at 2726.300 kb on + strand, within AO353_12400at 2726.300 kb on + strand, within AO353_12400at 2726.300 kb on + strand, within AO353_12400at 2726.300 kb on + strand, within AO353_12400at 2726.301 kb on - strand, within AO353_12400at 2726.301 kb on - strand, within AO353_12400at 2726.301 kb on - strand, within AO353_12400at 2726.301 kb on - strand, within AO353_12400at 2726.303 kb on + strand, within AO353_12400at 2726.303 kb on + strand, within AO353_12400at 2726.303 kb on + strand, within AO353_12400at 2726.303 kb on + strand, within AO353_12400at 2726.303 kb on + strand, within AO353_12400at 2726.303 kb on + strand, within AO353_12400at 2726.303 kb on + strand, within AO353_12400at 2726.303 kb on + strand, within AO353_12400at 2726.303 kb on + strand, within AO353_12400at 2726.303 kb on + strand, within AO353_12400at 2726.303 kb on + strand, within AO353_12400at 2726.303 kb on + strand, within AO353_12400at 2726.304 kb on - strand, within AO353_12400at 2726.304 kb on - strand, within AO353_12400at 2726.304 kb on - strand, within AO353_12400at 2726.349 kb on + strand, within AO353_12400at 2726.349 kb on + strand, within AO353_12400at 2726.350 kb on - strand, within AO353_12400at 2726.350 kb on - strand, within AO353_12400at 2726.350 kb on - strand, within AO353_12400at 2726.432 kb on + strandat 2726.433 kb on - strandat 2726.433 kb on - strandat 2726.491 kb on - strandat 2726.500 kb on + strandat 2726.500 kb on + strandat 2726.500 kb on + strandat 2726.500 kb on + strandat 2726.501 kb on - strandat 2726.501 kb on - strandat 2726.501 kb on - strandat 2726.501 kb on - strandat 2726.501 kb on - strandat 2726.501 kb on - strandat 2726.501 kb on - strandat 2726.501 kb on - strandat 2726.501 kb on - strandat 2726.501 kb on - strandat 2726.501 kb on - strandat 2726.501 kb on - strandat 2726.501 kb on - strandat 2726.501 kb on - strandat 2726.530 kb on + strandat 2726.530 kb on + strandat 2726.530 kb on + strandat 2726.530 kb on + strandat 2726.530 kb on + strandat 2726.530 kb on + strandat 2726.530 kb on + strandat 2726.530 kb on + strandat 2726.530 kb on + strandat 2726.531 kb on - strandat 2726.531 kb on - strandat 2726.531 kb on - strandat 2726.531 kb on - strandat 2726.639 kb on - strandat 2726.642 kb on - strandat 2726.642 kb on - strandat 2726.683 kb on + strand, within AO353_12405at 2726.683 kb on + strand, within AO353_12405at 2726.683 kb on + strand, within AO353_12405at 2726.683 kb on + strand, within AO353_12405at 2726.683 kb on + strand, within AO353_12405at 2726.683 kb on + strand, within AO353_12405at 2726.683 kb on + strand, within AO353_12405at 2726.683 kb on + strand, within AO353_12405at 2726.683 kb on + strand, within AO353_12405at 2726.683 kb on + strand, within AO353_12405at 2726.684 kb on - strand, within AO353_12405at 2726.684 kb on - strand, within AO353_12405at 2726.684 kb on - strand, within AO353_12405at 2726.684 kb on - strand, within AO353_12405at 2726.684 kb on - strand, within AO353_12405at 2727.017 kb on - strand, within AO353_12405at 2727.017 kb on - strand, within AO353_12405at 2727.017 kb on - strand, within AO353_12405at 2727.017 kb on - strand, within AO353_12405at 2727.017 kb on - strand, within AO353_12405at 2727.017 kb on - strand, within AO353_12405at 2727.069 kb on + strand, within AO353_12405at 2727.199 kb on + strand, within AO353_12405at 2727.199 kb on + strand, within AO353_12405at 2727.199 kb on + strand, within AO353_12405at 2727.199 kb on + strand, within AO353_12405at 2727.199 kb on + strand, within AO353_12405at 2727.199 kb on + strand, within AO353_12405at 2727.200 kb on - strand, within AO353_12405at 2727.200 kb on - strand, within AO353_12405at 2727.200 kb on - strand, within AO353_12405at 2727.200 kb on - strand, within AO353_12405at 2727.200 kb on - strand, within AO353_12405at 2727.200 kb on - strand, within AO353_12405at 2727.200 kb on - strand, within AO353_12405at 2727.200 kb on - strand, within AO353_12405at 2727.358 kb on + strand, within AO353_12405at 2727.358 kb on + strand, within AO353_12405at 2727.359 kb on - strand, within AO353_12405

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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2,724,829 + -0.3
2,724,829 + -1.0
2,724,829 + +0.3
2,724,857 + AO353_12395 0.11 -1.2
2,724,857 + AO353_12395 0.11 +0.7
2,725,200 + AO353_12395 0.54 +0.7
2,725,200 + AO353_12395 0.54 +0.2
2,725,228 - AO353_12395 0.57 -1.4
2,725,311 + AO353_12395 0.68 -0.5
2,725,312 - AO353_12395 0.68 +0.5
2,725,312 - AO353_12395 0.68 -0.8
2,725,407 - AO353_12395 0.80 +0.3
2,725,533 - -1.6
2,725,658 + +1.9
2,725,659 - -2.3
2,725,698 + -0.1
2,725,717 + -1.1
2,725,717 + +0.1
2,725,717 + -1.1
2,725,718 - -1.4
2,725,718 - +0.1
2,725,718 - +0.8
2,725,718 - -0.0
2,725,724 + -0.7
2,725,724 + +0.2
2,725,724 + +1.6
2,725,724 + +0.8
2,725,724 + -0.1
2,725,724 + -0.5
2,725,724 + +1.0
2,725,724 + +2.0
2,725,725 - -1.9
2,725,725 - -0.2
2,725,725 - -0.8
2,725,725 - +0.5
2,725,725 - -0.3
2,725,725 - -1.3
2,725,725 - +0.7
2,725,820 + -0.8
2,725,820 + -1.4
2,725,821 - -1.7
2,725,821 - -0.7
2,725,821 - -2.8
2,725,895 + AO353_12400 0.15 -1.3
2,725,896 - AO353_12400 0.15 -1.4
2,725,896 - AO353_12400 0.15 +0.8
2,725,940 + AO353_12400 0.22 +1.0
2,725,940 + AO353_12400 0.22 -0.5
2,726,147 + AO353_12400 0.56 -0.3
2,726,190 - AO353_12400 0.63 +1.0
2,726,300 + AO353_12400 0.80 -1.5
2,726,300 + AO353_12400 0.80 -0.8
2,726,300 + AO353_12400 0.80 -0.6
2,726,300 + AO353_12400 0.80 -1.2
2,726,301 - AO353_12400 0.81 +0.7
2,726,301 - AO353_12400 0.81 +0.2
2,726,301 - AO353_12400 0.81 -0.3
2,726,301 - AO353_12400 0.81 -0.1
2,726,303 + AO353_12400 0.81 -0.5
2,726,303 + AO353_12400 0.81 +0.8
2,726,303 + AO353_12400 0.81 -3.5
2,726,303 + AO353_12400 0.81 -0.3
2,726,303 + AO353_12400 0.81 -1.0
2,726,303 + AO353_12400 0.81 -0.0
2,726,303 + AO353_12400 0.81 +0.2
2,726,303 + AO353_12400 0.81 +0.3
2,726,303 + AO353_12400 0.81 +0.6
2,726,303 + AO353_12400 0.81 +1.2
2,726,303 + AO353_12400 0.81 -1.4
2,726,303 + AO353_12400 0.81 -1.2
2,726,304 - AO353_12400 0.81 -0.4
2,726,304 - AO353_12400 0.81 -0.4
2,726,304 - AO353_12400 0.81 -1.7
2,726,349 + AO353_12400 0.88 +0.4
2,726,349 + AO353_12400 0.88 -2.1
2,726,350 - AO353_12400 0.88 -0.8
2,726,350 - AO353_12400 0.88 +0.3
2,726,350 - AO353_12400 0.88 -0.7
2,726,432 + -0.3
2,726,433 - -0.1
2,726,433 - -1.8
2,726,491 - -0.0
2,726,500 + -0.7
2,726,500 + -0.1
2,726,500 + +0.1
2,726,500 + +0.5
2,726,501 - +0.4
2,726,501 - -0.1
2,726,501 - -0.1
2,726,501 - -0.1
2,726,501 - -0.1
2,726,501 - +0.3
2,726,501 - -1.0
2,726,501 - +1.2
2,726,501 - +1.6
2,726,501 - +0.6
2,726,501 - +0.1
2,726,501 - +1.0
2,726,501 - +0.3
2,726,501 - +1.4
2,726,530 + -0.1
2,726,530 + -0.3
2,726,530 + +1.2
2,726,530 + +1.3
2,726,530 + +0.4
2,726,530 + -0.1
2,726,530 + -0.0
2,726,530 + -0.6
2,726,530 + -0.1
2,726,531 - +0.1
2,726,531 - -0.4
2,726,531 - +1.7
2,726,531 - -1.2
2,726,639 - +1.2
2,726,642 - +0.0
2,726,642 - -0.1
2,726,683 + AO353_12405 0.12 -1.7
2,726,683 + AO353_12405 0.12 +1.6
2,726,683 + AO353_12405 0.12 +0.1
2,726,683 + AO353_12405 0.12 +0.9
2,726,683 + AO353_12405 0.12 +0.4
2,726,683 + AO353_12405 0.12 -0.3
2,726,683 + AO353_12405 0.12 +0.5
2,726,683 + AO353_12405 0.12 +0.8
2,726,683 + AO353_12405 0.12 +0.3
2,726,683 + AO353_12405 0.12 -0.8
2,726,684 - AO353_12405 0.12 -0.5
2,726,684 - AO353_12405 0.12 -0.1
2,726,684 - AO353_12405 0.12 -0.3
2,726,684 - AO353_12405 0.12 +1.2
2,726,684 - AO353_12405 0.12 -0.4
2,727,017 - AO353_12405 0.32 +0.5
2,727,017 - AO353_12405 0.32 +1.1
2,727,017 - AO353_12405 0.32 -1.8
2,727,017 - AO353_12405 0.32 -1.3
2,727,017 - AO353_12405 0.32 +1.6
2,727,017 - AO353_12405 0.32 +0.9
2,727,069 + AO353_12405 0.35 +2.6
2,727,199 + AO353_12405 0.42 +0.2
2,727,199 + AO353_12405 0.42 +0.6
2,727,199 + AO353_12405 0.42 -1.3
2,727,199 + AO353_12405 0.42 +0.6
2,727,199 + AO353_12405 0.42 +1.0
2,727,199 + AO353_12405 0.42 -0.3
2,727,200 - AO353_12405 0.43 -0.9
2,727,200 - AO353_12405 0.43 -0.7
2,727,200 - AO353_12405 0.43 +0.6
2,727,200 - AO353_12405 0.43 -1.1
2,727,200 - AO353_12405 0.43 -0.7
2,727,200 - AO353_12405 0.43 +1.1
2,727,200 - AO353_12405 0.43 +0.4
2,727,200 - AO353_12405 0.43 +0.0
2,727,358 + AO353_12405 0.52 +0.1
2,727,358 + AO353_12405 0.52 +0.3
2,727,359 - AO353_12405 0.52 +0.4

Or see this region's nucleotide sequence