Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_12085

Experiment: Gly-DL-Asp (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_12070 and AO353_12075 overlap by 1 nucleotidesAO353_12075 and AO353_12080 overlap by 1 nucleotidesAO353_12080 and AO353_12085 are separated by 42 nucleotidesAO353_12085 and AO353_12090 are separated by 9 nucleotidesAO353_12090 and AO353_12095 are separated by 66 nucleotides AO353_12070: AO353_12070 - imidazoleglycerol-phosphate dehydratase, at 2,654,347 to 2,654,940 _12070 AO353_12075: AO353_12075 - imidazole glycerol phosphate synthase subunit HisH, at 2,654,940 to 2,655,578 _12075 AO353_12080: AO353_12080 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, at 2,655,578 to 2,655,835 _12080 AO353_12085: AO353_12085 - 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data), at 2,655,878 to 2,656,615 _12085 AO353_12090: AO353_12090 - imidazole glycerol phosphate synthase subunit HisF, at 2,656,625 to 2,657,395 _12090 AO353_12095: AO353_12095 - amino acid ABC transporter substrate-binding protein, at 2,657,462 to 2,658,217 _12095 Position (kb) 2655 2656 2657Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2654.938 kb on + strandat 2654.938 kb on + strandat 2654.938 kb on + strandat 2654.938 kb on + strandat 2655.387 kb on + strand, within AO353_12075at 2655.387 kb on + strand, within AO353_12075at 2655.387 kb on + strand, within AO353_12075at 2655.388 kb on - strand, within AO353_12075at 2655.388 kb on - strand, within AO353_12075at 2655.388 kb on - strand, within AO353_12075at 2655.388 kb on - strand, within AO353_12075at 2655.402 kb on + strand, within AO353_12075at 2655.402 kb on + strand, within AO353_12075at 2655.402 kb on + strand, within AO353_12075at 2655.402 kb on + strand, within AO353_12075at 2655.402 kb on + strand, within AO353_12075at 2655.402 kb on + strand, within AO353_12075at 2655.402 kb on + strand, within AO353_12075at 2655.402 kb on + strand, within AO353_12075at 2655.402 kb on + strand, within AO353_12075at 2655.402 kb on + strand, within AO353_12075at 2655.402 kb on + strand, within AO353_12075at 2655.402 kb on + strand, within AO353_12075at 2655.402 kb on + strand, within AO353_12075at 2655.402 kb on + strand, within AO353_12075at 2655.402 kb on + strand, within AO353_12075at 2655.402 kb on + strand, within AO353_12075at 2655.402 kb on + strand, within AO353_12075at 2655.402 kb on + strand, within AO353_12075at 2655.402 kb on + strand, within AO353_12075at 2655.403 kb on - strand, within AO353_12075at 2655.403 kb on - strand, within AO353_12075at 2655.403 kb on - strand, within AO353_12075at 2655.403 kb on - strand, within AO353_12075at 2655.403 kb on - strand, within AO353_12075at 2655.403 kb on - strand, within AO353_12075at 2655.403 kb on - strand, within AO353_12075at 2655.403 kb on - strand, within AO353_12075at 2655.403 kb on - strand, within AO353_12075at 2655.403 kb on - strand, within AO353_12075at 2655.403 kb on - strand, within AO353_12075at 2655.405 kb on + strand, within AO353_12075at 2655.405 kb on + strand, within AO353_12075at 2655.405 kb on + strand, within AO353_12075at 2655.405 kb on + strand, within AO353_12075at 2655.405 kb on + strand, within AO353_12075at 2655.405 kb on + strand, within AO353_12075at 2655.405 kb on + strand, within AO353_12075at 2655.405 kb on + strand, within AO353_12075at 2655.406 kb on - strand, within AO353_12075at 2655.406 kb on - strand, within AO353_12075at 2655.406 kb on - strand, within AO353_12075at 2655.406 kb on - strand, within AO353_12075at 2655.406 kb on - strand, within AO353_12075at 2655.451 kb on - strand, within AO353_12075at 2655.743 kb on + strand, within AO353_12080at 2655.743 kb on + strand, within AO353_12080at 2655.743 kb on + strand, within AO353_12080at 2655.746 kb on + strand, within AO353_12080at 2655.746 kb on + strand, within AO353_12080at 2655.746 kb on + strand, within AO353_12080at 2655.746 kb on + strand, within AO353_12080at 2655.746 kb on + strand, within AO353_12080at 2655.746 kb on + strand, within AO353_12080at 2655.746 kb on + strand, within AO353_12080at 2655.746 kb on + strand, within AO353_12080at 2655.747 kb on - strand, within AO353_12080at 2655.747 kb on - strand, within AO353_12080at 2655.747 kb on - strand, within AO353_12080at 2655.747 kb on - strandat 2655.747 kb on - strand, within AO353_12080at 2655.747 kb on - strand, within AO353_12080at 2655.747 kb on - strand, within AO353_12080at 2655.747 kb on - strand, within AO353_12080at 2655.864 kb on + strandat 2655.865 kb on - strandat 2655.886 kb on + strandat 2655.887 kb on - strandat 2655.887 kb on - strandat 2655.887 kb on - strandat 2655.887 kb on - strandat 2655.904 kb on + strandat 2655.904 kb on + strandat 2655.904 kb on + strandat 2655.904 kb on + strandat 2656.154 kb on + strand, within AO353_12085at 2656.154 kb on + strand, within AO353_12085at 2656.154 kb on + strand, within AO353_12085at 2656.154 kb on + strand, within AO353_12085at 2656.154 kb on + strand, within AO353_12085at 2656.154 kb on + strand, within AO353_12085at 2656.155 kb on - strand, within AO353_12085at 2656.155 kb on - strand, within AO353_12085at 2656.155 kb on - strand, within AO353_12085at 2656.175 kb on + strand, within AO353_12085at 2656.175 kb on + strand, within AO353_12085at 2656.176 kb on - strand, within AO353_12085at 2656.176 kb on - strand, within AO353_12085at 2656.176 kb on - strand, within AO353_12085at 2656.176 kb on - strand, within AO353_12085at 2656.176 kb on - strand, within AO353_12085at 2656.176 kb on - strand, within AO353_12085at 2656.176 kb on - strand, within AO353_12085at 2656.176 kb on - strand, within AO353_12085at 2656.176 kb on - strand, within AO353_12085at 2656.252 kb on + strand, within AO353_12085at 2656.373 kb on + strand, within AO353_12085at 2656.373 kb on + strand, within AO353_12085at 2656.373 kb on + strand, within AO353_12085at 2656.373 kb on + strand, within AO353_12085at 2656.373 kb on + strand, within AO353_12085at 2656.373 kb on + strand, within AO353_12085at 2656.374 kb on - strand, within AO353_12085at 2656.374 kb on - strand, within AO353_12085at 2656.421 kb on + strand, within AO353_12085at 2656.421 kb on + strand, within AO353_12085at 2656.421 kb on + strand, within AO353_12085at 2656.421 kb on + strand, within AO353_12085at 2656.422 kb on - strand, within AO353_12085at 2656.422 kb on - strand, within AO353_12085at 2656.422 kb on - strand, within AO353_12085at 2656.556 kb on + strandat 2656.557 kb on - strandat 2656.604 kb on + strandat 2656.604 kb on + strandat 2656.604 kb on + strandat 2656.604 kb on + strandat 2656.604 kb on + strandat 2656.604 kb on + strandat 2656.605 kb on - strandat 2656.621 kb on + strandat 2656.621 kb on + strandat 2656.621 kb on + strandat 2656.621 kb on + strandat 2656.621 kb on + strandat 2656.621 kb on + strandat 2656.621 kb on + strandat 2656.621 kb on + strandat 2656.621 kb on + strandat 2656.621 kb on + strandat 2656.621 kb on + strandat 2656.621 kb on + strandat 2656.621 kb on + strandat 2656.622 kb on - strandat 2656.622 kb on - strandat 2656.622 kb on - strandat 2656.622 kb on - strandat 2656.622 kb on - strandat 2656.622 kb on - strandat 2656.768 kb on + strand, within AO353_12090at 2656.769 kb on - strand, within AO353_12090at 2656.769 kb on - strand, within AO353_12090at 2656.769 kb on - strand, within AO353_12090at 2656.769 kb on - strand, within AO353_12090at 2657.086 kb on + strand, within AO353_12090at 2657.339 kb on + strandat 2657.340 kb on - strandat 2657.363 kb on + strandat 2657.363 kb on + strandat 2657.363 kb on + strandat 2657.363 kb on + strandat 2657.363 kb on + strandat 2657.363 kb on + strandat 2657.364 kb on - strandat 2657.364 kb on - strandat 2657.364 kb on - strandat 2657.485 kb on - strandat 2657.503 kb on - strandat 2657.505 kb on + strandat 2657.505 kb on + strandat 2657.505 kb on + strandat 2657.506 kb on - strandat 2657.579 kb on + strand, within AO353_12095at 2657.579 kb on + strand, within AO353_12095at 2657.579 kb on + strand, within AO353_12095at 2657.579 kb on + strand, within AO353_12095

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
remove
2,654,938 + -1.0
2,654,938 + -1.0
2,654,938 + -0.5
2,654,938 + -2.5
2,655,387 + AO353_12075 0.70 -1.7
2,655,387 + AO353_12075 0.70 -0.9
2,655,387 + AO353_12075 0.70 +0.2
2,655,388 - AO353_12075 0.70 -0.9
2,655,388 - AO353_12075 0.70 -2.1
2,655,388 - AO353_12075 0.70 +0.2
2,655,388 - AO353_12075 0.70 +0.4
2,655,402 + AO353_12075 0.72 -0.5
2,655,402 + AO353_12075 0.72 +0.5
2,655,402 + AO353_12075 0.72 -1.8
2,655,402 + AO353_12075 0.72 -1.3
2,655,402 + AO353_12075 0.72 -2.0
2,655,402 + AO353_12075 0.72 -0.5
2,655,402 + AO353_12075 0.72 -3.0
2,655,402 + AO353_12075 0.72 -2.2
2,655,402 + AO353_12075 0.72 -1.8
2,655,402 + AO353_12075 0.72 -1.1
2,655,402 + AO353_12075 0.72 -1.4
2,655,402 + AO353_12075 0.72 +1.8
2,655,402 + AO353_12075 0.72 -0.8
2,655,402 + AO353_12075 0.72 -1.4
2,655,402 + AO353_12075 0.72 -2.1
2,655,402 + AO353_12075 0.72 -1.1
2,655,402 + AO353_12075 0.72 -2.9
2,655,402 + AO353_12075 0.72 +0.5
2,655,402 + AO353_12075 0.72 -0.4
2,655,403 - AO353_12075 0.72 -2.1
2,655,403 - AO353_12075 0.72 -2.4
2,655,403 - AO353_12075 0.72 -2.1
2,655,403 - AO353_12075 0.72 -1.9
2,655,403 - AO353_12075 0.72 -1.1
2,655,403 - AO353_12075 0.72 -0.6
2,655,403 - AO353_12075 0.72 -0.5
2,655,403 - AO353_12075 0.72 -1.0
2,655,403 - AO353_12075 0.72 +0.1
2,655,403 - AO353_12075 0.72 -2.3
2,655,403 - AO353_12075 0.72 -1.0
2,655,405 + AO353_12075 0.73 -0.9
2,655,405 + AO353_12075 0.73 -1.8
2,655,405 + AO353_12075 0.73 +0.2
2,655,405 + AO353_12075 0.73 -2.5
2,655,405 + AO353_12075 0.73 -0.9
2,655,405 + AO353_12075 0.73 -2.7
2,655,405 + AO353_12075 0.73 -2.7
2,655,405 + AO353_12075 0.73 -0.8
2,655,406 - AO353_12075 0.73 +0.1
2,655,406 - AO353_12075 0.73 -1.6
2,655,406 - AO353_12075 0.73 -2.4
2,655,406 - AO353_12075 0.73 -1.8
2,655,406 - AO353_12075 0.73 -2.1
2,655,451 - AO353_12075 0.80 -0.2
2,655,743 + AO353_12080 0.64 +0.5
2,655,743 + AO353_12080 0.64 +0.1
2,655,743 + AO353_12080 0.64 +0.1
2,655,746 + AO353_12080 0.65 -0.5
2,655,746 + AO353_12080 0.65 -0.9
2,655,746 + AO353_12080 0.65 -1.0
2,655,746 + AO353_12080 0.65 +0.8
2,655,746 + AO353_12080 0.65 -0.6
2,655,746 + AO353_12080 0.65 +0.6
2,655,746 + AO353_12080 0.65 +2.1
2,655,746 + AO353_12080 0.65 +0.0
2,655,747 - AO353_12080 0.66 -1.8
2,655,747 - AO353_12080 0.66 -2.1
2,655,747 - AO353_12080 0.66 -1.3
2,655,747 - +0.7
2,655,747 - AO353_12080 0.66 -1.8
2,655,747 - AO353_12080 0.66 -0.3
2,655,747 - AO353_12080 0.66 -3.7
2,655,747 - AO353_12080 0.66 +0.1
2,655,864 + +0.2
2,655,865 - -1.5
2,655,886 + -1.6
2,655,887 - +0.2
2,655,887 - -0.5
2,655,887 - -3.4
2,655,887 - -2.8
2,655,904 + -1.9
2,655,904 + -0.3
2,655,904 + -2.3
2,655,904 + -1.2
2,656,154 + AO353_12085 0.37 -3.5
2,656,154 + AO353_12085 0.37 -1.3
2,656,154 + AO353_12085 0.37 -2.5
2,656,154 + AO353_12085 0.37 -2.5
2,656,154 + AO353_12085 0.37 -0.8
2,656,154 + AO353_12085 0.37 -1.6
2,656,155 - AO353_12085 0.38 +0.2
2,656,155 - AO353_12085 0.38 -1.5
2,656,155 - AO353_12085 0.38 -0.4
2,656,175 + AO353_12085 0.40 -2.4
2,656,175 + AO353_12085 0.40 -0.9
2,656,176 - AO353_12085 0.40 -0.3
2,656,176 - AO353_12085 0.40 -0.4
2,656,176 - AO353_12085 0.40 -1.7
2,656,176 - AO353_12085 0.40 -2.2
2,656,176 - AO353_12085 0.40 -1.4
2,656,176 - AO353_12085 0.40 -2.3
2,656,176 - AO353_12085 0.40 -0.5
2,656,176 - AO353_12085 0.40 -2.7
2,656,176 - AO353_12085 0.40 -0.9
2,656,252 + AO353_12085 0.51 -1.5
2,656,373 + AO353_12085 0.67 -2.7
2,656,373 + AO353_12085 0.67 -1.9
2,656,373 + AO353_12085 0.67 -0.7
2,656,373 + AO353_12085 0.67 -1.5
2,656,373 + AO353_12085 0.67 -2.7
2,656,373 + AO353_12085 0.67 -2.6
2,656,374 - AO353_12085 0.67 -2.1
2,656,374 - AO353_12085 0.67 -0.9
2,656,421 + AO353_12085 0.74 -2.2
2,656,421 + AO353_12085 0.74 -0.9
2,656,421 + AO353_12085 0.74 -1.3
2,656,421 + AO353_12085 0.74 -1.3
2,656,422 - AO353_12085 0.74 -1.2
2,656,422 - AO353_12085 0.74 -1.7
2,656,422 - AO353_12085 0.74 -2.4
2,656,556 + -1.0
2,656,557 - -0.1
2,656,604 + +0.7
2,656,604 + -1.2
2,656,604 + +1.1
2,656,604 + -0.7
2,656,604 + -1.0
2,656,604 + +1.1
2,656,605 - -3.5
2,656,621 + -1.7
2,656,621 + -0.2
2,656,621 + -1.6
2,656,621 + -3.7
2,656,621 + -1.3
2,656,621 + -2.7
2,656,621 + -0.0
2,656,621 + +0.4
2,656,621 + -2.2
2,656,621 + -1.8
2,656,621 + -3.5
2,656,621 + -1.3
2,656,621 + +0.2
2,656,622 - -3.6
2,656,622 - +0.6
2,656,622 - -2.2
2,656,622 - +0.1
2,656,622 - -1.8
2,656,622 - -1.5
2,656,768 + AO353_12090 0.19 -0.1
2,656,769 - AO353_12090 0.19 -0.4
2,656,769 - AO353_12090 0.19 -0.5
2,656,769 - AO353_12090 0.19 -0.9
2,656,769 - AO353_12090 0.19 +0.2
2,657,086 + AO353_12090 0.60 -2.0
2,657,339 + -0.5
2,657,340 - +0.7
2,657,363 + +0.3
2,657,363 + -2.8
2,657,363 + -1.9
2,657,363 + -1.0
2,657,363 + -0.3
2,657,363 + -1.4
2,657,364 - +0.1
2,657,364 - -1.6
2,657,364 - -1.9
2,657,485 - +0.4
2,657,503 - -0.9
2,657,505 + -1.2
2,657,505 + +1.9
2,657,505 + -0.1
2,657,506 - +1.8
2,657,579 + AO353_12095 0.15 -0.4
2,657,579 + AO353_12095 0.15 +0.2
2,657,579 + AO353_12095 0.15 -0.4
2,657,579 + AO353_12095 0.15 -0.9

Or see this region's nucleotide sequence