Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_10665 and AO353_10670 are separated by 13 nucleotides AO353_10670 and AO353_10675 are separated by 163 nucleotides
AO353_10665: AO353_10665 - coproporphyrinogen III oxidase, at 2,337,729 to 2,338,643
_10665
AO353_10670: AO353_10670 - shikimate dehydrogenase, at 2,338,657 to 2,339,478
_10670
AO353_10675: AO353_10675 - SulP family inorganic anion transporter, at 2,339,642 to 2,341,210
_10675
Position (kb)
2338
2339
2340 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2337.658 kb on + strand at 2338.666 kb on + strand at 2338.666 kb on + strand at 2338.666 kb on + strand at 2338.667 kb on - strand at 2338.667 kb on - strand at 2338.667 kb on - strand at 2338.673 kb on + strand at 2338.673 kb on + strand at 2338.674 kb on - strand at 2338.698 kb on + strand at 2338.698 kb on + strand at 2338.698 kb on + strand at 2338.698 kb on + strand at 2338.698 kb on + strand at 2338.699 kb on - strand at 2338.699 kb on - strand at 2338.699 kb on - strand at 2338.753 kb on + strand, within AO353_10670 at 2338.753 kb on + strand, within AO353_10670 at 2338.753 kb on + strand, within AO353_10670 at 2338.753 kb on + strand, within AO353_10670 at 2338.753 kb on + strand, within AO353_10670 at 2338.754 kb on - strand, within AO353_10670 at 2338.754 kb on - strand, within AO353_10670 at 2338.754 kb on - strand, within AO353_10670 at 2338.754 kb on - strand, within AO353_10670 at 2338.754 kb on - strand, within AO353_10670 at 2338.858 kb on + strand, within AO353_10670 at 2339.208 kb on + strand, within AO353_10670 at 2339.208 kb on + strand, within AO353_10670 at 2339.290 kb on + strand, within AO353_10670 at 2339.290 kb on + strand, within AO353_10670 at 2339.302 kb on + strand, within AO353_10670 at 2339.302 kb on + strand, within AO353_10670 at 2339.302 kb on + strand, within AO353_10670 at 2339.302 kb on + strand, within AO353_10670 at 2339.302 kb on + strand, within AO353_10670 at 2339.303 kb on - strand, within AO353_10670 at 2339.303 kb on - strand, within AO353_10670 at 2339.303 kb on - strand, within AO353_10670 at 2339.303 kb on - strand, within AO353_10670 at 2339.303 kb on - strand, within AO353_10670 at 2339.303 kb on - strand, within AO353_10670 at 2339.303 kb on - strand, within AO353_10670 at 2339.303 kb on - strand, within AO353_10670 at 2339.303 kb on - strand, within AO353_10670 at 2339.423 kb on + strand at 2339.476 kb on + strand at 2339.477 kb on - strand at 2339.477 kb on - strand at 2339.477 kb on - strand at 2339.574 kb on - strand at 2339.630 kb on + strand at 2339.630 kb on + strand at 2339.630 kb on + strand at 2339.630 kb on + strand at 2339.630 kb on + strand at 2339.631 kb on - strand at 2339.631 kb on - strand at 2339.631 kb on - strand at 2339.780 kb on + strand at 2339.781 kb on - strand at 2339.781 kb on - strand at 2339.790 kb on + strand at 2339.790 kb on + strand at 2339.790 kb on + strand at 2339.808 kb on + strand, within AO353_10675 at 2339.808 kb on + strand, within AO353_10675 at 2339.808 kb on + strand, within AO353_10675 at 2339.808 kb on + strand, within AO353_10675 at 2339.808 kb on + strand, within AO353_10675 at 2339.808 kb on + strand, within AO353_10675 at 2339.808 kb on + strand, within AO353_10675 at 2339.808 kb on + strand, within AO353_10675 at 2339.808 kb on + strand, within AO353_10675 at 2339.808 kb on + strand, within AO353_10675 at 2339.808 kb on + strand, within AO353_10675 at 2339.808 kb on + strand, within AO353_10675 at 2339.808 kb on + strand, within AO353_10675 at 2339.808 kb on + strand, within AO353_10675 at 2339.808 kb on + strand, within AO353_10675 at 2339.808 kb on + strand, within AO353_10675 at 2339.808 kb on + strand, within AO353_10675 at 2339.809 kb on - strand, within AO353_10675 at 2339.809 kb on - strand, within AO353_10675 at 2339.809 kb on - strand, within AO353_10675 at 2339.809 kb on - strand, within AO353_10675 at 2339.809 kb on - strand, within AO353_10675 at 2339.809 kb on - strand, within AO353_10675 at 2339.809 kb on - strand, within AO353_10675 at 2339.809 kb on - strand, within AO353_10675 at 2339.809 kb on - strand, within AO353_10675 at 2339.809 kb on - strand, within AO353_10675 at 2339.809 kb on - strand, within AO353_10675 at 2339.809 kb on - strand, within AO353_10675 at 2339.809 kb on - strand, within AO353_10675 at 2339.809 kb on - strand, within AO353_10675 at 2339.822 kb on + strand, within AO353_10675 at 2339.822 kb on + strand, within AO353_10675 at 2339.842 kb on + strand, within AO353_10675 at 2339.842 kb on + strand, within AO353_10675 at 2339.842 kb on + strand, within AO353_10675 at 2339.842 kb on + strand, within AO353_10675 at 2339.842 kb on + strand, within AO353_10675 at 2339.842 kb on + strand, within AO353_10675 at 2339.842 kb on + strand, within AO353_10675 at 2339.842 kb on + strand, within AO353_10675 at 2339.842 kb on + strand, within AO353_10675 at 2339.842 kb on + strand, within AO353_10675 at 2339.842 kb on + strand, within AO353_10675 at 2339.843 kb on - strand, within AO353_10675 at 2339.843 kb on - strand, within AO353_10675 at 2339.843 kb on - strand, within AO353_10675 at 2339.843 kb on - strand, within AO353_10675 at 2339.843 kb on - strand, within AO353_10675 at 2339.843 kb on - strand, within AO353_10675 at 2339.865 kb on + strand, within AO353_10675 at 2339.865 kb on + strand, within AO353_10675 at 2339.866 kb on - strand, within AO353_10675 at 2339.866 kb on - strand, within AO353_10675 at 2339.964 kb on + strand, within AO353_10675 at 2339.994 kb on + strand, within AO353_10675 at 2339.995 kb on - strand, within AO353_10675 at 2339.995 kb on - strand, within AO353_10675 at 2340.008 kb on + strand, within AO353_10675 at 2340.008 kb on + strand, within AO353_10675 at 2340.008 kb on + strand, within AO353_10675 at 2340.009 kb on - strand, within AO353_10675 at 2340.009 kb on - strand, within AO353_10675 at 2340.009 kb on - strand, within AO353_10675 at 2340.009 kb on - strand, within AO353_10675 at 2340.009 kb on - strand, within AO353_10675 at 2340.020 kb on + strand, within AO353_10675 at 2340.020 kb on + strand, within AO353_10675 at 2340.020 kb on + strand, within AO353_10675 at 2340.021 kb on - strand, within AO353_10675 at 2340.021 kb on - strand, within AO353_10675 at 2340.021 kb on - strand, within AO353_10675 at 2340.155 kb on - strand, within AO353_10675 at 2340.155 kb on - strand, within AO353_10675 at 2340.161 kb on + strand, within AO353_10675 at 2340.247 kb on - strand, within AO353_10675 at 2340.353 kb on + strand, within AO353_10675 at 2340.353 kb on + strand, within AO353_10675 at 2340.354 kb on - strand, within AO353_10675 at 2340.354 kb on - strand, within AO353_10675 at 2340.354 kb on - strand, within AO353_10675 at 2340.354 kb on - strand, within AO353_10675
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 2,337,658 + -1.5 2,338,666 + +1.4 2,338,666 + +0.6 2,338,666 + +1.0 2,338,667 - +1.1 2,338,667 - -1.5 2,338,667 - -1.9 2,338,673 + -0.6 2,338,673 + +0.4 2,338,674 - +0.5 2,338,698 + +1.0 2,338,698 + -1.8 2,338,698 + -0.1 2,338,698 + -0.9 2,338,698 + -1.6 2,338,699 - +0.5 2,338,699 - -2.4 2,338,699 - -0.0 2,338,753 + AO353_10670 0.12 -0.3 2,338,753 + AO353_10670 0.12 -0.5 2,338,753 + AO353_10670 0.12 +0.2 2,338,753 + AO353_10670 0.12 -1.4 2,338,753 + AO353_10670 0.12 -0.2 2,338,754 - AO353_10670 0.12 +1.1 2,338,754 - AO353_10670 0.12 -0.9 2,338,754 - AO353_10670 0.12 +0.7 2,338,754 - AO353_10670 0.12 -2.7 2,338,754 - AO353_10670 0.12 -1.3 2,338,858 + AO353_10670 0.24 -1.0 2,339,208 + AO353_10670 0.67 +0.1 2,339,208 + AO353_10670 0.67 -1.7 2,339,290 + AO353_10670 0.77 -0.4 2,339,290 + AO353_10670 0.77 +0.3 2,339,302 + AO353_10670 0.78 -0.9 2,339,302 + AO353_10670 0.78 +1.1 2,339,302 + AO353_10670 0.78 -0.5 2,339,302 + AO353_10670 0.78 +0.5 2,339,302 + AO353_10670 0.78 -1.1 2,339,303 - AO353_10670 0.79 -0.6 2,339,303 - AO353_10670 0.79 -2.3 2,339,303 - AO353_10670 0.79 -1.0 2,339,303 - AO353_10670 0.79 -1.3 2,339,303 - AO353_10670 0.79 -1.8 2,339,303 - AO353_10670 0.79 -1.5 2,339,303 - AO353_10670 0.79 -1.2 2,339,303 - AO353_10670 0.79 -0.1 2,339,303 - AO353_10670 0.79 -0.8 2,339,423 + +0.4 2,339,476 + +0.8 2,339,477 - +0.1 2,339,477 - -0.6 2,339,477 - -0.1 2,339,574 - +0.4 2,339,630 + +0.6 2,339,630 + -0.1 2,339,630 + -0.5 2,339,630 + +0.4 2,339,630 + -1.3 2,339,631 - +0.5 2,339,631 - -1.0 2,339,631 - -0.1 2,339,780 + -1.3 2,339,781 - +1.1 2,339,781 - -0.7 2,339,790 + +1.4 2,339,790 + +0.8 2,339,790 + +0.3 2,339,808 + AO353_10675 0.11 +0.9 2,339,808 + AO353_10675 0.11 +1.1 2,339,808 + AO353_10675 0.11 -0.7 2,339,808 + AO353_10675 0.11 -0.1 2,339,808 + AO353_10675 0.11 -0.6 2,339,808 + AO353_10675 0.11 +1.3 2,339,808 + AO353_10675 0.11 +0.0 2,339,808 + AO353_10675 0.11 -1.2 2,339,808 + AO353_10675 0.11 -0.8 2,339,808 + AO353_10675 0.11 +1.3 2,339,808 + AO353_10675 0.11 -0.6 2,339,808 + AO353_10675 0.11 +0.4 2,339,808 + AO353_10675 0.11 +0.3 2,339,808 + AO353_10675 0.11 -1.5 2,339,808 + AO353_10675 0.11 +0.3 2,339,808 + AO353_10675 0.11 -1.2 2,339,808 + AO353_10675 0.11 +1.4 2,339,809 - AO353_10675 0.11 +1.3 2,339,809 - AO353_10675 0.11 +0.5 2,339,809 - AO353_10675 0.11 +0.7 2,339,809 - AO353_10675 0.11 +0.1 2,339,809 - AO353_10675 0.11 -2.0 2,339,809 - AO353_10675 0.11 +0.1 2,339,809 - AO353_10675 0.11 +0.0 2,339,809 - AO353_10675 0.11 -0.5 2,339,809 - AO353_10675 0.11 -1.0 2,339,809 - AO353_10675 0.11 -1.1 2,339,809 - AO353_10675 0.11 -0.5 2,339,809 - AO353_10675 0.11 -1.2 2,339,809 - AO353_10675 0.11 -0.5 2,339,809 - AO353_10675 0.11 +0.1 2,339,822 + AO353_10675 0.11 +1.0 2,339,822 + AO353_10675 0.11 -1.1 2,339,842 + AO353_10675 0.13 -0.8 2,339,842 + AO353_10675 0.13 -0.5 2,339,842 + AO353_10675 0.13 -1.1 2,339,842 + AO353_10675 0.13 +1.5 2,339,842 + AO353_10675 0.13 -2.0 2,339,842 + AO353_10675 0.13 +0.5 2,339,842 + AO353_10675 0.13 -0.9 2,339,842 + AO353_10675 0.13 -0.7 2,339,842 + AO353_10675 0.13 -0.8 2,339,842 + AO353_10675 0.13 -0.6 2,339,842 + AO353_10675 0.13 -0.4 2,339,843 - AO353_10675 0.13 -0.3 2,339,843 - AO353_10675 0.13 +0.1 2,339,843 - AO353_10675 0.13 +0.1 2,339,843 - AO353_10675 0.13 -0.2 2,339,843 - AO353_10675 0.13 +2.0 2,339,843 - AO353_10675 0.13 -0.1 2,339,865 + AO353_10675 0.14 -2.8 2,339,865 + AO353_10675 0.14 -0.2 2,339,866 - AO353_10675 0.14 +1.4 2,339,866 - AO353_10675 0.14 +0.2 2,339,964 + AO353_10675 0.21 +1.0 2,339,994 + AO353_10675 0.22 -0.4 2,339,995 - AO353_10675 0.22 -0.2 2,339,995 - AO353_10675 0.22 +0.7 2,340,008 + AO353_10675 0.23 -0.5 2,340,008 + AO353_10675 0.23 +0.8 2,340,008 + AO353_10675 0.23 -0.8 2,340,009 - AO353_10675 0.23 +0.8 2,340,009 - AO353_10675 0.23 -0.3 2,340,009 - AO353_10675 0.23 +1.0 2,340,009 - AO353_10675 0.23 -0.3 2,340,009 - AO353_10675 0.23 +1.0 2,340,020 + AO353_10675 0.24 -1.0 2,340,020 + AO353_10675 0.24 -0.0 2,340,020 + AO353_10675 0.24 +0.4 2,340,021 - AO353_10675 0.24 -0.9 2,340,021 - AO353_10675 0.24 -0.2 2,340,021 - AO353_10675 0.24 -0.2 2,340,155 - AO353_10675 0.33 -0.3 2,340,155 - AO353_10675 0.33 -0.8 2,340,161 + AO353_10675 0.33 -0.8 2,340,247 - AO353_10675 0.39 -0.5 2,340,353 + AO353_10675 0.45 +0.7 2,340,353 + AO353_10675 0.45 -1.8 2,340,354 - AO353_10675 0.45 +0.6 2,340,354 - AO353_10675 0.45 -0.0 2,340,354 - AO353_10675 0.45 -0.0 2,340,354 - AO353_10675 0.45 -1.4
Or see this region's nucleotide sequence