Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_08855

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_08845 and AO353_08850 are separated by 248 nucleotidesAO353_08850 and AO353_08855 are separated by 120 nucleotidesAO353_08855 and AO353_08860 are separated by 254 nucleotides AO353_08845: AO353_08845 - transcription termination factor Rho, at 1,944,169 to 1,945,428 _08845 AO353_08850: AO353_08850 - thioredoxin, at 1,945,677 to 1,946,006 _08850 AO353_08855: AO353_08855 - GntR family transcriptional regulator, at 1,946,127 to 1,946,831 _08855 AO353_08860: AO353_08860 - amino acid ABC transporter substrate-binding protein, at 1,947,086 to 1,947,871 _08860 Position (kb) 1946 1947Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1945.442 kb on - strandat 1945.442 kb on - strandat 1945.442 kb on - strandat 1945.442 kb on - strandat 1945.450 kb on - strandat 1945.450 kb on - strandat 1945.450 kb on - strandat 1945.450 kb on - strandat 1945.467 kb on - strandat 1945.467 kb on - strandat 1945.467 kb on - strandat 1945.467 kb on - strandat 1945.467 kb on - strandat 1945.467 kb on - strandat 1945.518 kb on - strandat 1945.518 kb on - strandat 1945.518 kb on - strandat 1945.518 kb on - strandat 1945.518 kb on - strandat 1945.522 kb on - strandat 1945.522 kb on - strandat 1945.522 kb on - strandat 1945.522 kb on - strandat 1945.590 kb on - strandat 1945.590 kb on - strandat 1945.639 kb on + strandat 1945.678 kb on + strandat 1945.678 kb on + strandat 1945.679 kb on - strandat 1946.024 kb on - strandat 1946.047 kb on + strandat 1946.048 kb on - strandat 1946.116 kb on + strandat 1946.117 kb on - strandat 1946.118 kb on + strandat 1946.118 kb on + strandat 1946.118 kb on + strandat 1946.118 kb on + strandat 1946.118 kb on + strandat 1946.118 kb on + strandat 1946.118 kb on + strandat 1946.119 kb on - strandat 1946.119 kb on - strandat 1946.119 kb on - strandat 1946.119 kb on - strandat 1946.119 kb on - strandat 1946.119 kb on - strandat 1946.119 kb on - strandat 1946.195 kb on + strandat 1946.196 kb on - strandat 1946.295 kb on + strand, within AO353_08855at 1946.296 kb on - strand, within AO353_08855at 1946.523 kb on + strand, within AO353_08855at 1946.523 kb on + strand, within AO353_08855at 1946.523 kb on + strand, within AO353_08855at 1946.523 kb on + strand, within AO353_08855at 1946.523 kb on + strand, within AO353_08855at 1946.530 kb on + strand, within AO353_08855at 1946.531 kb on - strand, within AO353_08855at 1946.531 kb on - strand, within AO353_08855at 1946.546 kb on + strand, within AO353_08855at 1946.547 kb on - strand, within AO353_08855at 1946.547 kb on - strand, within AO353_08855at 1946.780 kb on + strandat 1946.780 kb on + strandat 1946.781 kb on - strandat 1946.870 kb on + strandat 1946.870 kb on + strandat 1946.870 kb on + strandat 1946.870 kb on + strandat 1946.870 kb on + strandat 1946.871 kb on - strandat 1946.871 kb on - strandat 1946.871 kb on - strandat 1946.877 kb on - strandat 1946.921 kb on + strandat 1946.922 kb on - strandat 1946.992 kb on + strandat 1946.992 kb on + strandat 1946.993 kb on - strandat 1946.993 kb on - strandat 1946.993 kb on - strandat 1947.000 kb on + strandat 1947.438 kb on - strand, within AO353_08860at 1947.449 kb on + strand, within AO353_08860at 1947.449 kb on + strand, within AO353_08860at 1947.449 kb on + strand, within AO353_08860at 1947.449 kb on + strand, within AO353_08860at 1947.450 kb on - strand, within AO353_08860at 1947.450 kb on - strand, within AO353_08860at 1947.450 kb on - strand, within AO353_08860at 1947.508 kb on + strand, within AO353_08860at 1947.509 kb on - strand, within AO353_08860at 1947.509 kb on - strand, within AO353_08860at 1947.620 kb on + strand, within AO353_08860at 1947.620 kb on + strand, within AO353_08860at 1947.620 kb on + strand, within AO353_08860at 1947.621 kb on - strand, within AO353_08860at 1947.621 kb on - strand, within AO353_08860at 1947.621 kb on - strand, within AO353_08860at 1947.737 kb on + strand, within AO353_08860at 1947.737 kb on + strand, within AO353_08860at 1947.738 kb on - strand, within AO353_08860at 1947.738 kb on - strand, within AO353_08860at 1947.771 kb on + strand, within AO353_08860at 1947.771 kb on + strand, within AO353_08860at 1947.771 kb on + strand, within AO353_08860at 1947.772 kb on - strand, within AO353_08860at 1947.772 kb on - strand, within AO353_08860at 1947.772 kb on - strand, within AO353_08860

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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1,945,442 - +0.5
1,945,442 - +1.5
1,945,442 - -0.5
1,945,442 - +1.0
1,945,450 - +0.5
1,945,450 - -1.2
1,945,450 - +1.1
1,945,450 - -1.7
1,945,467 - +0.6
1,945,467 - +1.8
1,945,467 - -1.2
1,945,467 - -0.7
1,945,467 - -0.6
1,945,467 - +1.5
1,945,518 - -1.6
1,945,518 - +0.6
1,945,518 - -1.4
1,945,518 - +0.1
1,945,518 - -1.4
1,945,522 - +0.8
1,945,522 - +1.0
1,945,522 - -0.9
1,945,522 - -0.1
1,945,590 - +0.8
1,945,590 - -0.8
1,945,639 + +1.4
1,945,678 + +3.7
1,945,678 + +0.6
1,945,679 - +0.0
1,946,024 - -0.6
1,946,047 + +0.5
1,946,048 - +1.6
1,946,116 + -2.1
1,946,117 - +1.2
1,946,118 + -0.2
1,946,118 + -0.2
1,946,118 + -1.3
1,946,118 + +0.6
1,946,118 + -0.6
1,946,118 + -0.3
1,946,118 + -1.4
1,946,119 - -0.1
1,946,119 - -0.9
1,946,119 - +0.1
1,946,119 - +2.1
1,946,119 - -0.7
1,946,119 - -1.4
1,946,119 - +0.3
1,946,195 + +0.7
1,946,196 - -1.2
1,946,295 + AO353_08855 0.24 -1.5
1,946,296 - AO353_08855 0.24 -1.1
1,946,523 + AO353_08855 0.56 -0.4
1,946,523 + AO353_08855 0.56 -0.1
1,946,523 + AO353_08855 0.56 -2.0
1,946,523 + AO353_08855 0.56 +0.8
1,946,523 + AO353_08855 0.56 -0.3
1,946,530 + AO353_08855 0.57 -1.9
1,946,531 - AO353_08855 0.57 +0.0
1,946,531 - AO353_08855 0.57 -0.9
1,946,546 + AO353_08855 0.59 -0.6
1,946,547 - AO353_08855 0.60 -0.3
1,946,547 - AO353_08855 0.60 -1.1
1,946,780 + -0.6
1,946,780 + -2.3
1,946,781 - +1.5
1,946,870 + +0.6
1,946,870 + +1.0
1,946,870 + +0.6
1,946,870 + +0.8
1,946,870 + +0.0
1,946,871 - -1.6
1,946,871 - +2.1
1,946,871 - -1.5
1,946,877 - -1.1
1,946,921 + -0.4
1,946,922 - -0.3
1,946,992 + -0.5
1,946,992 + +1.3
1,946,993 - +1.0
1,946,993 - -1.3
1,946,993 - -0.4
1,947,000 + +1.1
1,947,438 - AO353_08860 0.45 +0.1
1,947,449 + AO353_08860 0.46 -0.1
1,947,449 + AO353_08860 0.46 -0.9
1,947,449 + AO353_08860 0.46 -1.0
1,947,449 + AO353_08860 0.46 -0.6
1,947,450 - AO353_08860 0.46 -0.2
1,947,450 - AO353_08860 0.46 +0.3
1,947,450 - AO353_08860 0.46 +0.3
1,947,508 + AO353_08860 0.54 -0.8
1,947,509 - AO353_08860 0.54 +0.2
1,947,509 - AO353_08860 0.54 +0.3
1,947,620 + AO353_08860 0.68 +1.0
1,947,620 + AO353_08860 0.68 +1.2
1,947,620 + AO353_08860 0.68 -0.0
1,947,621 - AO353_08860 0.68 +0.5
1,947,621 - AO353_08860 0.68 +0.6
1,947,621 - AO353_08860 0.68 -0.5
1,947,737 + AO353_08860 0.83 +0.2
1,947,737 + AO353_08860 0.83 -0.2
1,947,738 - AO353_08860 0.83 -0.4
1,947,738 - AO353_08860 0.83 +0.0
1,947,771 + AO353_08860 0.87 -0.8
1,947,771 + AO353_08860 0.87 -0.2
1,947,771 + AO353_08860 0.87 +1.4
1,947,772 - AO353_08860 0.87 -0.4
1,947,772 - AO353_08860 0.87 +2.0
1,947,772 - AO353_08860 0.87 -0.7

Or see this region's nucleotide sequence