Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_08845 and AO353_08850 are separated by 248 nucleotides AO353_08850 and AO353_08855 are separated by 120 nucleotides AO353_08855 and AO353_08860 are separated by 254 nucleotides
AO353_08845: AO353_08845 - transcription termination factor Rho, at 1,944,169 to 1,945,428
_08845
AO353_08850: AO353_08850 - thioredoxin, at 1,945,677 to 1,946,006
_08850
AO353_08855: AO353_08855 - GntR family transcriptional regulator, at 1,946,127 to 1,946,831
_08855
AO353_08860: AO353_08860 - amino acid ABC transporter substrate-binding protein, at 1,947,086 to 1,947,871
_08860
Position (kb)
1946
1947 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1945.442 kb on - strand at 1945.442 kb on - strand at 1945.442 kb on - strand at 1945.442 kb on - strand at 1945.450 kb on - strand at 1945.450 kb on - strand at 1945.450 kb on - strand at 1945.450 kb on - strand at 1945.467 kb on - strand at 1945.467 kb on - strand at 1945.467 kb on - strand at 1945.467 kb on - strand at 1945.467 kb on - strand at 1945.467 kb on - strand at 1945.518 kb on - strand at 1945.518 kb on - strand at 1945.518 kb on - strand at 1945.518 kb on - strand at 1945.518 kb on - strand at 1945.522 kb on - strand at 1945.522 kb on - strand at 1945.522 kb on - strand at 1945.522 kb on - strand at 1945.590 kb on - strand at 1945.590 kb on - strand at 1945.639 kb on + strand at 1945.678 kb on + strand at 1945.678 kb on + strand at 1945.679 kb on - strand at 1946.024 kb on - strand at 1946.047 kb on + strand at 1946.048 kb on - strand at 1946.116 kb on + strand at 1946.117 kb on - strand at 1946.118 kb on + strand at 1946.118 kb on + strand at 1946.118 kb on + strand at 1946.118 kb on + strand at 1946.118 kb on + strand at 1946.118 kb on + strand at 1946.118 kb on + strand at 1946.119 kb on - strand at 1946.119 kb on - strand at 1946.119 kb on - strand at 1946.119 kb on - strand at 1946.119 kb on - strand at 1946.119 kb on - strand at 1946.119 kb on - strand at 1946.195 kb on + strand at 1946.196 kb on - strand at 1946.295 kb on + strand, within AO353_08855 at 1946.296 kb on - strand, within AO353_08855 at 1946.523 kb on + strand, within AO353_08855 at 1946.523 kb on + strand, within AO353_08855 at 1946.523 kb on + strand, within AO353_08855 at 1946.523 kb on + strand, within AO353_08855 at 1946.523 kb on + strand, within AO353_08855 at 1946.530 kb on + strand, within AO353_08855 at 1946.531 kb on - strand, within AO353_08855 at 1946.531 kb on - strand, within AO353_08855 at 1946.546 kb on + strand, within AO353_08855 at 1946.547 kb on - strand, within AO353_08855 at 1946.547 kb on - strand, within AO353_08855 at 1946.780 kb on + strand at 1946.780 kb on + strand at 1946.781 kb on - strand at 1946.870 kb on + strand at 1946.870 kb on + strand at 1946.870 kb on + strand at 1946.870 kb on + strand at 1946.870 kb on + strand at 1946.871 kb on - strand at 1946.871 kb on - strand at 1946.871 kb on - strand at 1946.877 kb on - strand at 1946.921 kb on + strand at 1946.922 kb on - strand at 1946.992 kb on + strand at 1946.992 kb on + strand at 1946.993 kb on - strand at 1946.993 kb on - strand at 1946.993 kb on - strand at 1947.000 kb on + strand at 1947.438 kb on - strand, within AO353_08860 at 1947.449 kb on + strand, within AO353_08860 at 1947.449 kb on + strand, within AO353_08860 at 1947.449 kb on + strand, within AO353_08860 at 1947.449 kb on + strand, within AO353_08860 at 1947.450 kb on - strand, within AO353_08860 at 1947.450 kb on - strand, within AO353_08860 at 1947.450 kb on - strand, within AO353_08860 at 1947.508 kb on + strand, within AO353_08860 at 1947.509 kb on - strand, within AO353_08860 at 1947.509 kb on - strand, within AO353_08860 at 1947.620 kb on + strand, within AO353_08860 at 1947.620 kb on + strand, within AO353_08860 at 1947.620 kb on + strand, within AO353_08860 at 1947.621 kb on - strand, within AO353_08860 at 1947.621 kb on - strand, within AO353_08860 at 1947.621 kb on - strand, within AO353_08860 at 1947.737 kb on + strand, within AO353_08860 at 1947.737 kb on + strand, within AO353_08860 at 1947.738 kb on - strand, within AO353_08860 at 1947.738 kb on - strand, within AO353_08860 at 1947.771 kb on + strand, within AO353_08860 at 1947.771 kb on + strand, within AO353_08860 at 1947.771 kb on + strand, within AO353_08860 at 1947.772 kb on - strand, within AO353_08860 at 1947.772 kb on - strand, within AO353_08860 at 1947.772 kb on - strand, within AO353_08860
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 1,945,442 - +0.5 1,945,442 - +1.5 1,945,442 - -0.5 1,945,442 - +1.0 1,945,450 - +0.5 1,945,450 - -1.2 1,945,450 - +1.1 1,945,450 - -1.7 1,945,467 - +0.6 1,945,467 - +1.8 1,945,467 - -1.2 1,945,467 - -0.7 1,945,467 - -0.6 1,945,467 - +1.5 1,945,518 - -1.6 1,945,518 - +0.6 1,945,518 - -1.4 1,945,518 - +0.1 1,945,518 - -1.4 1,945,522 - +0.8 1,945,522 - +1.0 1,945,522 - -0.9 1,945,522 - -0.1 1,945,590 - +0.8 1,945,590 - -0.8 1,945,639 + +1.4 1,945,678 + +3.7 1,945,678 + +0.6 1,945,679 - +0.0 1,946,024 - -0.6 1,946,047 + +0.5 1,946,048 - +1.6 1,946,116 + -2.1 1,946,117 - +1.2 1,946,118 + -0.2 1,946,118 + -0.2 1,946,118 + -1.3 1,946,118 + +0.6 1,946,118 + -0.6 1,946,118 + -0.3 1,946,118 + -1.4 1,946,119 - -0.1 1,946,119 - -0.9 1,946,119 - +0.1 1,946,119 - +2.1 1,946,119 - -0.7 1,946,119 - -1.4 1,946,119 - +0.3 1,946,195 + +0.7 1,946,196 - -1.2 1,946,295 + AO353_08855 0.24 -1.5 1,946,296 - AO353_08855 0.24 -1.1 1,946,523 + AO353_08855 0.56 -0.4 1,946,523 + AO353_08855 0.56 -0.1 1,946,523 + AO353_08855 0.56 -2.0 1,946,523 + AO353_08855 0.56 +0.8 1,946,523 + AO353_08855 0.56 -0.3 1,946,530 + AO353_08855 0.57 -1.9 1,946,531 - AO353_08855 0.57 +0.0 1,946,531 - AO353_08855 0.57 -0.9 1,946,546 + AO353_08855 0.59 -0.6 1,946,547 - AO353_08855 0.60 -0.3 1,946,547 - AO353_08855 0.60 -1.1 1,946,780 + -0.6 1,946,780 + -2.3 1,946,781 - +1.5 1,946,870 + +0.6 1,946,870 + +1.0 1,946,870 + +0.6 1,946,870 + +0.8 1,946,870 + +0.0 1,946,871 - -1.6 1,946,871 - +2.1 1,946,871 - -1.5 1,946,877 - -1.1 1,946,921 + -0.4 1,946,922 - -0.3 1,946,992 + -0.5 1,946,992 + +1.3 1,946,993 - +1.0 1,946,993 - -1.3 1,946,993 - -0.4 1,947,000 + +1.1 1,947,438 - AO353_08860 0.45 +0.1 1,947,449 + AO353_08860 0.46 -0.1 1,947,449 + AO353_08860 0.46 -0.9 1,947,449 + AO353_08860 0.46 -1.0 1,947,449 + AO353_08860 0.46 -0.6 1,947,450 - AO353_08860 0.46 -0.2 1,947,450 - AO353_08860 0.46 +0.3 1,947,450 - AO353_08860 0.46 +0.3 1,947,508 + AO353_08860 0.54 -0.8 1,947,509 - AO353_08860 0.54 +0.2 1,947,509 - AO353_08860 0.54 +0.3 1,947,620 + AO353_08860 0.68 +1.0 1,947,620 + AO353_08860 0.68 +1.2 1,947,620 + AO353_08860 0.68 -0.0 1,947,621 - AO353_08860 0.68 +0.5 1,947,621 - AO353_08860 0.68 +0.6 1,947,621 - AO353_08860 0.68 -0.5 1,947,737 + AO353_08860 0.83 +0.2 1,947,737 + AO353_08860 0.83 -0.2 1,947,738 - AO353_08860 0.83 -0.4 1,947,738 - AO353_08860 0.83 +0.0 1,947,771 + AO353_08860 0.87 -0.8 1,947,771 + AO353_08860 0.87 -0.2 1,947,771 + AO353_08860 0.87 +1.4 1,947,772 - AO353_08860 0.87 -0.4 1,947,772 - AO353_08860 0.87 +2.0 1,947,772 - AO353_08860 0.87 -0.7
Or see this region's nucleotide sequence