Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_08015

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_08010 and AO353_08015 are separated by 192 nucleotidesAO353_08015 and AO353_08020 are separated by 87 nucleotides AO353_08010: AO353_08010 - adenosylhomocysteinase, at 1,765,540 to 1,766,949 _08010 AO353_08015: AO353_08015 - 5,10-methylenetetrahydrofolate reductase, at 1,767,142 to 1,767,987 _08015 AO353_08020: AO353_08020 - hypothetical protein, at 1,768,075 to 1,769,157 _08020 Position (kb) 1767 1768Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1766.950 kb on + strandat 1766.951 kb on - strandat 1766.987 kb on + strandat 1766.987 kb on + strandat 1766.987 kb on + strandat 1766.987 kb on + strandat 1766.987 kb on + strandat 1766.987 kb on + strandat 1766.987 kb on + strandat 1766.987 kb on + strandat 1766.988 kb on - strandat 1766.988 kb on - strandat 1766.988 kb on - strandat 1766.988 kb on - strandat 1766.988 kb on - strandat 1766.988 kb on - strandat 1766.988 kb on - strandat 1766.988 kb on - strandat 1766.988 kb on - strandat 1766.988 kb on - strandat 1766.991 kb on + strandat 1766.991 kb on + strandat 1766.992 kb on - strandat 1766.992 kb on - strandat 1766.992 kb on - strandat 1766.992 kb on - strandat 1766.992 kb on - strandat 1767.004 kb on + strandat 1767.005 kb on - strandat 1767.005 kb on - strandat 1767.009 kb on + strandat 1767.009 kb on + strandat 1767.009 kb on + strandat 1767.010 kb on - strandat 1767.010 kb on - strandat 1767.092 kb on + strandat 1767.092 kb on + strandat 1767.092 kb on + strandat 1767.093 kb on - strandat 1767.093 kb on - strandat 1767.093 kb on - strandat 1767.093 kb on - strandat 1767.111 kb on - strandat 1767.119 kb on + strandat 1767.119 kb on + strandat 1767.119 kb on + strandat 1767.120 kb on - strandat 1767.120 kb on - strandat 1767.136 kb on - strandat 1767.141 kb on + strandat 1767.141 kb on + strandat 1767.141 kb on + strandat 1767.141 kb on + strandat 1767.141 kb on + strandat 1767.141 kb on + strandat 1767.141 kb on + strandat 1767.141 kb on + strandat 1767.142 kb on - strandat 1767.142 kb on - strandat 1767.142 kb on - strandat 1767.142 kb on - strandat 1767.238 kb on + strand, within AO353_08015at 1767.238 kb on + strand, within AO353_08015at 1767.238 kb on + strand, within AO353_08015at 1767.238 kb on + strand, within AO353_08015at 1767.239 kb on - strand, within AO353_08015at 1767.239 kb on - strand, within AO353_08015at 1767.239 kb on - strand, within AO353_08015at 1767.239 kb on - strand, within AO353_08015at 1767.239 kb on - strand, within AO353_08015at 1767.265 kb on + strand, within AO353_08015at 1767.265 kb on + strand, within AO353_08015at 1767.265 kb on + strand, within AO353_08015at 1767.265 kb on + strand, within AO353_08015at 1767.266 kb on - strand, within AO353_08015at 1767.403 kb on + strand, within AO353_08015at 1767.403 kb on + strand, within AO353_08015at 1767.403 kb on + strand, within AO353_08015at 1767.403 kb on + strand, within AO353_08015at 1767.404 kb on - strand, within AO353_08015at 1767.404 kb on - strand, within AO353_08015at 1767.404 kb on - strand, within AO353_08015at 1767.404 kb on - strand, within AO353_08015at 1767.652 kb on + strand, within AO353_08015at 1767.653 kb on - strand, within AO353_08015at 1767.673 kb on + strand, within AO353_08015at 1767.673 kb on + strand, within AO353_08015at 1767.674 kb on - strand, within AO353_08015at 1767.674 kb on - strand, within AO353_08015at 1767.674 kb on - strand, within AO353_08015at 1767.674 kb on - strand, within AO353_08015at 1767.674 kb on - strand, within AO353_08015at 1767.674 kb on - strand, within AO353_08015at 1767.674 kb on - strand, within AO353_08015at 1767.674 kb on - strand, within AO353_08015at 1767.674 kb on - strand, within AO353_08015at 1767.674 kb on - strand, within AO353_08015at 1767.680 kb on - strand, within AO353_08015at 1767.695 kb on + strand, within AO353_08015at 1767.696 kb on - strand, within AO353_08015at 1767.696 kb on - strand, within AO353_08015at 1767.751 kb on + strand, within AO353_08015at 1767.752 kb on - strand, within AO353_08015at 1767.752 kb on - strand, within AO353_08015at 1767.752 kb on - strand, within AO353_08015at 1767.826 kb on + strand, within AO353_08015at 1767.925 kb on + strandat 1767.925 kb on + strandat 1767.925 kb on + strandat 1767.925 kb on + strandat 1767.996 kb on + strandat 1767.996 kb on + strandat 1767.997 kb on - strandat 1767.997 kb on - strandat 1767.997 kb on - strandat 1767.997 kb on - strandat 1767.997 kb on - strandat 1768.072 kb on + strandat 1768.072 kb on + strandat 1768.072 kb on + strandat 1768.072 kb on + strandat 1768.072 kb on + strandat 1768.072 kb on + strandat 1768.072 kb on + strandat 1768.072 kb on + strandat 1768.072 kb on + strandat 1768.072 kb on + strandat 1768.072 kb on + strandat 1768.072 kb on + strandat 1768.072 kb on + strandat 1768.072 kb on + strandat 1768.073 kb on - strandat 1768.073 kb on - strandat 1768.073 kb on - strandat 1768.073 kb on - strandat 1768.073 kb on - strandat 1768.073 kb on - strandat 1768.086 kb on + strandat 1768.086 kb on + strandat 1768.086 kb on + strandat 1768.086 kb on + strandat 1768.087 kb on - strandat 1768.087 kb on - strandat 1768.114 kb on + strandat 1768.114 kb on + strandat 1768.115 kb on - strandat 1768.115 kb on - strandat 1768.115 kb on - strandat 1768.115 kb on - strandat 1768.115 kb on - strandat 1768.115 kb on - strandat 1768.115 kb on - strandat 1768.123 kb on + strandat 1768.123 kb on + strandat 1768.123 kb on + strandat 1768.123 kb on + strandat 1768.124 kb on - strandat 1768.124 kb on - strandat 1768.138 kb on + strandat 1768.138 kb on + strandat 1768.138 kb on + strandat 1768.139 kb on - strandat 1768.139 kb on - strandat 1768.139 kb on - strandat 1768.139 kb on - strandat 1768.139 kb on - strandat 1768.316 kb on - strand, within AO353_08020at 1768.392 kb on + strand, within AO353_08020at 1768.392 kb on + strand, within AO353_08020at 1768.393 kb on - strand, within AO353_08020at 1768.393 kb on - strand, within AO353_08020at 1768.393 kb on - strand, within AO353_08020at 1768.393 kb on - strand, within AO353_08020at 1768.475 kb on - strand, within AO353_08020at 1768.520 kb on + strand, within AO353_08020at 1768.520 kb on + strand, within AO353_08020at 1768.520 kb on + strand, within AO353_08020at 1768.520 kb on + strand, within AO353_08020at 1768.520 kb on + strand, within AO353_08020at 1768.520 kb on + strand, within AO353_08020at 1768.521 kb on - strand, within AO353_08020at 1768.521 kb on - strand, within AO353_08020at 1768.660 kb on + strand, within AO353_08020at 1768.660 kb on + strand, within AO353_08020at 1768.660 kb on + strand, within AO353_08020at 1768.660 kb on + strand, within AO353_08020at 1768.661 kb on - strand, within AO353_08020at 1768.661 kb on - strand, within AO353_08020at 1768.661 kb on - strand, within AO353_08020at 1768.661 kb on - strand, within AO353_08020at 1768.661 kb on - strand, within AO353_08020at 1768.661 kb on - strand, within AO353_08020at 1768.661 kb on - strand, within AO353_08020at 1768.663 kb on - strand, within AO353_08020at 1768.663 kb on - strand, within AO353_08020at 1768.663 kb on - strand, within AO353_08020at 1768.663 kb on - strand, within AO353_08020at 1768.741 kb on + strand, within AO353_08020at 1768.741 kb on + strand, within AO353_08020at 1768.741 kb on + strand, within AO353_08020at 1768.741 kb on + strand, within AO353_08020at 1768.742 kb on - strand, within AO353_08020at 1768.890 kb on + strand, within AO353_08020at 1768.890 kb on + strand, within AO353_08020at 1768.948 kb on + strand, within AO353_08020at 1768.949 kb on - strand, within AO353_08020at 1768.949 kb on - strand, within AO353_08020

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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1,766,950 + -0.2
1,766,951 - +1.4
1,766,987 + +0.4
1,766,987 + +0.8
1,766,987 + -0.1
1,766,987 + -1.5
1,766,987 + +0.3
1,766,987 + -0.8
1,766,987 + -0.4
1,766,987 + +2.0
1,766,988 - +0.3
1,766,988 - -1.6
1,766,988 - -0.2
1,766,988 - -1.6
1,766,988 - -1.0
1,766,988 - -0.3
1,766,988 - +0.4
1,766,988 - -0.9
1,766,988 - -1.3
1,766,988 - -0.1
1,766,991 + -1.2
1,766,991 + +0.4
1,766,992 - +0.7
1,766,992 - -0.6
1,766,992 - -0.6
1,766,992 - -0.8
1,766,992 - +0.3
1,767,004 + -1.7
1,767,005 - -0.2
1,767,005 - +0.2
1,767,009 + -0.3
1,767,009 + -1.6
1,767,009 + -0.9
1,767,010 - -2.9
1,767,010 - -1.5
1,767,092 + -0.7
1,767,092 + +0.0
1,767,092 + -2.2
1,767,093 - -1.2
1,767,093 - -0.2
1,767,093 - +0.7
1,767,093 - +0.7
1,767,111 - -0.6
1,767,119 + -0.0
1,767,119 + +0.1
1,767,119 + -1.4
1,767,120 - +0.2
1,767,120 - -2.7
1,767,136 - +1.4
1,767,141 + -1.7
1,767,141 + -0.7
1,767,141 + -1.0
1,767,141 + -0.1
1,767,141 + -0.6
1,767,141 + -1.9
1,767,141 + -0.7
1,767,141 + -0.7
1,767,142 - -0.3
1,767,142 - -0.8
1,767,142 - -0.2
1,767,142 - -0.8
1,767,238 + AO353_08015 0.11 -0.6
1,767,238 + AO353_08015 0.11 -1.4
1,767,238 + AO353_08015 0.11 -0.7
1,767,238 + AO353_08015 0.11 +1.8
1,767,239 - AO353_08015 0.11 -1.2
1,767,239 - AO353_08015 0.11 -2.1
1,767,239 - AO353_08015 0.11 +0.2
1,767,239 - AO353_08015 0.11 -1.2
1,767,239 - AO353_08015 0.11 +1.0
1,767,265 + AO353_08015 0.15 -2.2
1,767,265 + AO353_08015 0.15 -0.2
1,767,265 + AO353_08015 0.15 -0.8
1,767,265 + AO353_08015 0.15 -0.2
1,767,266 - AO353_08015 0.15 -1.2
1,767,403 + AO353_08015 0.31 -0.3
1,767,403 + AO353_08015 0.31 -0.4
1,767,403 + AO353_08015 0.31 -0.3
1,767,403 + AO353_08015 0.31 -0.3
1,767,404 - AO353_08015 0.31 -1.9
1,767,404 - AO353_08015 0.31 -0.7
1,767,404 - AO353_08015 0.31 -0.4
1,767,404 - AO353_08015 0.31 -0.6
1,767,652 + AO353_08015 0.60 -2.0
1,767,653 - AO353_08015 0.60 -1.2
1,767,673 + AO353_08015 0.63 -1.4
1,767,673 + AO353_08015 0.63 -1.6
1,767,674 - AO353_08015 0.63 -0.3
1,767,674 - AO353_08015 0.63 -0.9
1,767,674 - AO353_08015 0.63 -0.6
1,767,674 - AO353_08015 0.63 -0.8
1,767,674 - AO353_08015 0.63 -2.6
1,767,674 - AO353_08015 0.63 +0.4
1,767,674 - AO353_08015 0.63 -0.4
1,767,674 - AO353_08015 0.63 -1.8
1,767,674 - AO353_08015 0.63 -0.6
1,767,674 - AO353_08015 0.63 -1.4
1,767,680 - AO353_08015 0.64 -1.6
1,767,695 + AO353_08015 0.65 -2.2
1,767,696 - AO353_08015 0.65 -1.6
1,767,696 - AO353_08015 0.65 -0.7
1,767,751 + AO353_08015 0.72 +1.4
1,767,752 - AO353_08015 0.72 -0.9
1,767,752 - AO353_08015 0.72 -1.1
1,767,752 - AO353_08015 0.72 -1.3
1,767,826 + AO353_08015 0.81 -1.0
1,767,925 + -0.2
1,767,925 + +0.2
1,767,925 + +0.8
1,767,925 + -1.6
1,767,996 + -0.4
1,767,996 + -0.7
1,767,997 - -1.7
1,767,997 - -0.4
1,767,997 - -0.4
1,767,997 - -0.3
1,767,997 - -0.5
1,768,072 + +0.4
1,768,072 + -0.6
1,768,072 + +1.6
1,768,072 + -1.2
1,768,072 + +0.5
1,768,072 + -0.4
1,768,072 + +1.6
1,768,072 + +0.5
1,768,072 + +1.4
1,768,072 + -1.9
1,768,072 + -0.0
1,768,072 + -0.1
1,768,072 + -0.3
1,768,072 + -0.7
1,768,073 - -0.4
1,768,073 - +0.0
1,768,073 - +0.4
1,768,073 - +0.4
1,768,073 - -1.0
1,768,073 - -0.0
1,768,086 + +0.0
1,768,086 + -0.9
1,768,086 + +2.6
1,768,086 + -1.3
1,768,087 - -0.5
1,768,087 - -0.6
1,768,114 + -0.2
1,768,114 + +0.5
1,768,115 - +0.9
1,768,115 - +0.3
1,768,115 - -0.2
1,768,115 - -1.3
1,768,115 - +0.1
1,768,115 - +3.0
1,768,115 - +1.0
1,768,123 + -0.3
1,768,123 + -0.2
1,768,123 + -1.5
1,768,123 + -0.3
1,768,124 - +0.6
1,768,124 - -2.2
1,768,138 + -0.3
1,768,138 + -0.1
1,768,138 + -0.3
1,768,139 - -0.1
1,768,139 - -0.5
1,768,139 - +1.2
1,768,139 - +0.7
1,768,139 - +0.2
1,768,316 - AO353_08020 0.22 -2.4
1,768,392 + AO353_08020 0.29 -0.1
1,768,392 + AO353_08020 0.29 +2.0
1,768,393 - AO353_08020 0.29 -0.8
1,768,393 - AO353_08020 0.29 -0.5
1,768,393 - AO353_08020 0.29 -0.7
1,768,393 - AO353_08020 0.29 -0.8
1,768,475 - AO353_08020 0.37 -0.2
1,768,520 + AO353_08020 0.41 +0.8
1,768,520 + AO353_08020 0.41 +0.1
1,768,520 + AO353_08020 0.41 -0.7
1,768,520 + AO353_08020 0.41 -0.7
1,768,520 + AO353_08020 0.41 -1.3
1,768,520 + AO353_08020 0.41 +1.7
1,768,521 - AO353_08020 0.41 -0.7
1,768,521 - AO353_08020 0.41 +0.6
1,768,660 + AO353_08020 0.54 -0.2
1,768,660 + AO353_08020 0.54 -0.7
1,768,660 + AO353_08020 0.54 -0.5
1,768,660 + AO353_08020 0.54 -0.9
1,768,661 - AO353_08020 0.54 +4.3
1,768,661 - AO353_08020 0.54 -0.1
1,768,661 - AO353_08020 0.54 -0.8
1,768,661 - AO353_08020 0.54 +1.3
1,768,661 - AO353_08020 0.54 +0.5
1,768,661 - AO353_08020 0.54 -0.7
1,768,661 - AO353_08020 0.54 -0.2
1,768,663 - AO353_08020 0.54 -0.7
1,768,663 - AO353_08020 0.54 +1.3
1,768,663 - AO353_08020 0.54 +0.0
1,768,663 - AO353_08020 0.54 -0.9
1,768,741 + AO353_08020 0.61 -0.1
1,768,741 + AO353_08020 0.61 +0.6
1,768,741 + AO353_08020 0.61 +0.3
1,768,741 + AO353_08020 0.61 -0.4
1,768,742 - AO353_08020 0.62 -0.5
1,768,890 + AO353_08020 0.75 +0.1
1,768,890 + AO353_08020 0.75 +0.0
1,768,948 + AO353_08020 0.81 -0.5
1,768,949 - AO353_08020 0.81 -0.2
1,768,949 - AO353_08020 0.81 -0.2

Or see this region's nucleotide sequence