Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_05415

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_05410 and AO353_05415 are separated by 120 nucleotidesAO353_05415 and AO353_05420 are separated by 339 nucleotides AO353_05410: AO353_05410 - peptide ABC transporter ATP-binding protein, at 1,192,479 to 1,193,450 _05410 AO353_05415: AO353_05415 - hypothetical protein, at 1,193,571 to 1,193,801 _05415 AO353_05420: AO353_05420 - peptide chain release factor 3, at 1,194,141 to 1,195,724 _05420 Position (kb) 1193 1194Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1192.736 kb on + strand, within AO353_05410at 1192.736 kb on + strand, within AO353_05410at 1192.737 kb on - strand, within AO353_05410at 1192.779 kb on + strand, within AO353_05410at 1192.832 kb on - strand, within AO353_05410at 1192.832 kb on - strand, within AO353_05410at 1192.917 kb on + strand, within AO353_05410at 1192.917 kb on + strand, within AO353_05410at 1193.097 kb on + strand, within AO353_05410at 1193.097 kb on + strand, within AO353_05410at 1193.097 kb on + strand, within AO353_05410at 1193.097 kb on + strand, within AO353_05410at 1193.097 kb on + strand, within AO353_05410at 1193.098 kb on - strand, within AO353_05410at 1193.098 kb on - strand, within AO353_05410at 1193.098 kb on - strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strandat 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.102 kb on - strand, within AO353_05410at 1193.160 kb on + strand, within AO353_05410at 1193.160 kb on + strand, within AO353_05410at 1193.160 kb on + strand, within AO353_05410at 1193.161 kb on - strand, within AO353_05410at 1193.161 kb on - strand, within AO353_05410at 1193.161 kb on - strand, within AO353_05410at 1193.161 kb on - strand, within AO353_05410at 1193.161 kb on - strand, within AO353_05410at 1193.161 kb on - strand, within AO353_05410at 1193.202 kb on + strand, within AO353_05410at 1193.202 kb on + strand, within AO353_05410at 1193.202 kb on + strand, within AO353_05410at 1193.202 kb on + strand, within AO353_05410at 1193.202 kb on + strand, within AO353_05410at 1193.202 kb on + strand, within AO353_05410at 1193.202 kb on + strand, within AO353_05410at 1193.202 kb on + strand, within AO353_05410at 1193.202 kb on + strand, within AO353_05410at 1193.202 kb on + strand, within AO353_05410at 1193.202 kb on + strand, within AO353_05410at 1193.202 kb on + strand, within AO353_05410at 1193.202 kb on + strand, within AO353_05410at 1193.202 kb on + strand, within AO353_05410at 1193.203 kb on - strand, within AO353_05410at 1193.203 kb on - strand, within AO353_05410at 1193.203 kb on - strand, within AO353_05410at 1193.203 kb on - strand, within AO353_05410at 1193.203 kb on - strand, within AO353_05410at 1193.203 kb on - strand, within AO353_05410at 1193.203 kb on - strand, within AO353_05410at 1193.203 kb on - strand, within AO353_05410at 1193.203 kb on - strand, within AO353_05410at 1193.203 kb on - strand, within AO353_05410at 1193.203 kb on - strand, within AO353_05410at 1193.203 kb on - strand, within AO353_05410at 1193.203 kb on - strand, within AO353_05410at 1193.203 kb on - strand, within AO353_05410at 1193.223 kb on + strand, within AO353_05410at 1193.224 kb on - strand, within AO353_05410at 1193.224 kb on - strand, within AO353_05410at 1193.224 kb on - strand, within AO353_05410at 1193.448 kb on + strandat 1193.625 kb on - strand, within AO353_05415at 1193.625 kb on - strand, within AO353_05415at 1193.775 kb on + strand, within AO353_05415at 1193.775 kb on + strand, within AO353_05415at 1193.776 kb on - strand, within AO353_05415at 1193.801 kb on + strandat 1193.802 kb on - strandat 1193.802 kb on - strandat 1193.802 kb on - strandat 1193.802 kb on - strandat 1193.802 kb on - strandat 1193.802 kb on - strandat 1193.802 kb on - strandat 1193.821 kb on + strandat 1193.822 kb on - strandat 1193.822 kb on - strandat 1193.822 kb on - strandat 1193.836 kb on + strandat 1193.836 kb on + strandat 1193.836 kb on + strandat 1193.836 kb on + strandat 1193.837 kb on - strandat 1193.837 kb on - strandat 1193.837 kb on - strandat 1193.837 kb on - strandat 1193.840 kb on + strandat 1193.841 kb on - strandat 1193.849 kb on + strandat 1193.849 kb on + strandat 1193.850 kb on - strandat 1193.850 kb on - strandat 1193.850 kb on - strandat 1193.850 kb on - strandat 1193.850 kb on - strandat 1193.850 kb on - strandat 1193.850 kb on - strandat 1193.850 kb on - strandat 1193.850 kb on - strandat 1193.850 kb on - strandat 1193.864 kb on + strandat 1193.881 kb on + strandat 1193.882 kb on - strandat 1193.882 kb on - strandat 1193.890 kb on + strandat 1193.891 kb on - strandat 1193.891 kb on - strandat 1193.908 kb on + strandat 1193.908 kb on + strandat 1193.908 kb on + strandat 1193.908 kb on + strandat 1193.908 kb on + strandat 1193.908 kb on + strandat 1193.909 kb on - strandat 1193.909 kb on - strandat 1193.909 kb on - strandat 1193.909 kb on - strandat 1193.909 kb on - strandat 1193.917 kb on - strandat 1193.986 kb on - strandat 1193.986 kb on - strandat 1193.986 kb on - strandat 1193.986 kb on - strandat 1194.020 kb on + strandat 1194.020 kb on + strandat 1194.021 kb on - strandat 1194.037 kb on + strandat 1194.037 kb on + strandat 1194.037 kb on + strandat 1194.038 kb on - strandat 1194.038 kb on - strandat 1194.038 kb on - strandat 1194.056 kb on + strandat 1194.057 kb on - strandat 1194.057 kb on - strandat 1194.057 kb on - strandat 1194.057 kb on - strandat 1194.073 kb on + strandat 1194.073 kb on + strandat 1194.074 kb on - strandat 1194.074 kb on - strandat 1194.080 kb on + strandat 1194.080 kb on + strandat 1194.080 kb on + strandat 1194.080 kb on + strandat 1194.080 kb on + strandat 1194.080 kb on + strandat 1194.080 kb on + strandat 1194.080 kb on + strandat 1194.081 kb on - strandat 1194.081 kb on - strandat 1194.081 kb on - strandat 1194.081 kb on - strandat 1194.081 kb on - strandat 1194.081 kb on - strandat 1194.081 kb on - strandat 1194.081 kb on - strandat 1194.081 kb on - strandat 1194.081 kb on - strandat 1194.081 kb on - strandat 1194.135 kb on + strandat 1194.135 kb on + strandat 1194.135 kb on + strandat 1194.136 kb on - strandat 1194.142 kb on + strandat 1194.142 kb on + strandat 1194.142 kb on + strandat 1194.142 kb on + strandat 1194.143 kb on - strandat 1194.143 kb on - strandat 1194.143 kb on - strandat 1194.143 kb on - strandat 1194.364 kb on + strand, within AO353_05420at 1194.365 kb on - strand, within AO353_05420at 1194.776 kb on + strand, within AO353_05420

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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1,192,736 + AO353_05410 0.26 -2.1
1,192,736 + AO353_05410 0.26 -1.5
1,192,737 - AO353_05410 0.27 +1.2
1,192,779 + AO353_05410 0.31 -1.2
1,192,832 - AO353_05410 0.36 -1.3
1,192,832 - AO353_05410 0.36 -0.3
1,192,917 + AO353_05410 0.45 -1.2
1,192,917 + AO353_05410 0.45 -0.6
1,193,097 + AO353_05410 0.64 -1.2
1,193,097 + AO353_05410 0.64 -1.8
1,193,097 + AO353_05410 0.64 -0.9
1,193,097 + AO353_05410 0.64 +0.4
1,193,097 + AO353_05410 0.64 -2.8
1,193,098 - AO353_05410 0.64 -1.9
1,193,098 - AO353_05410 0.64 -1.1
1,193,098 - AO353_05410 0.64 -0.6
1,193,101 + AO353_05410 0.64 -0.2
1,193,101 + AO353_05410 0.64 -1.1
1,193,101 + AO353_05410 0.64 -1.5
1,193,101 + AO353_05410 0.64 -1.7
1,193,101 + AO353_05410 0.64 +1.8
1,193,101 + AO353_05410 0.64 +0.0
1,193,101 + AO353_05410 0.64 -1.7
1,193,101 + AO353_05410 0.64 -3.2
1,193,101 + AO353_05410 0.64 -0.6
1,193,101 + AO353_05410 0.64 -3.0
1,193,101 + AO353_05410 0.64 -1.0
1,193,101 + AO353_05410 0.64 -1.3
1,193,101 + AO353_05410 0.64 -1.8
1,193,101 + AO353_05410 0.64 -0.3
1,193,101 + +0.0
1,193,101 + AO353_05410 0.64 -2.4
1,193,101 + AO353_05410 0.64 -0.3
1,193,101 + AO353_05410 0.64 -1.4
1,193,101 + AO353_05410 0.64 -1.2
1,193,101 + AO353_05410 0.64 -1.6
1,193,101 + AO353_05410 0.64 -1.3
1,193,101 + AO353_05410 0.64 -2.0
1,193,101 + AO353_05410 0.64 -1.3
1,193,101 + AO353_05410 0.64 -2.5
1,193,101 + AO353_05410 0.64 -1.1
1,193,101 + AO353_05410 0.64 -0.8
1,193,101 + AO353_05410 0.64 -1.9
1,193,101 + AO353_05410 0.64 -2.5
1,193,101 + AO353_05410 0.64 -0.6
1,193,101 + AO353_05410 0.64 -1.8
1,193,101 + AO353_05410 0.64 +0.5
1,193,101 + AO353_05410 0.64 -3.4
1,193,101 + AO353_05410 0.64 -2.2
1,193,101 + AO353_05410 0.64 +0.5
1,193,102 - AO353_05410 0.64 -2.6
1,193,160 + AO353_05410 0.70 -1.3
1,193,160 + AO353_05410 0.70 -2.2
1,193,160 + AO353_05410 0.70 -1.7
1,193,161 - AO353_05410 0.70 -1.8
1,193,161 - AO353_05410 0.70 -3.2
1,193,161 - AO353_05410 0.70 -1.5
1,193,161 - AO353_05410 0.70 -1.8
1,193,161 - AO353_05410 0.70 -1.0
1,193,161 - AO353_05410 0.70 -0.4
1,193,202 + AO353_05410 0.74 +0.2
1,193,202 + AO353_05410 0.74 -1.6
1,193,202 + AO353_05410 0.74 -0.9
1,193,202 + AO353_05410 0.74 -2.1
1,193,202 + AO353_05410 0.74 -0.7
1,193,202 + AO353_05410 0.74 -1.1
1,193,202 + AO353_05410 0.74 -0.3
1,193,202 + AO353_05410 0.74 -2.3
1,193,202 + AO353_05410 0.74 -1.8
1,193,202 + AO353_05410 0.74 -1.6
1,193,202 + AO353_05410 0.74 -1.1
1,193,202 + AO353_05410 0.74 -2.6
1,193,202 + AO353_05410 0.74 -0.4
1,193,202 + AO353_05410 0.74 -1.2
1,193,203 - AO353_05410 0.74 -0.5
1,193,203 - AO353_05410 0.74 -1.3
1,193,203 - AO353_05410 0.74 -1.6
1,193,203 - AO353_05410 0.74 -0.9
1,193,203 - AO353_05410 0.74 -2.7
1,193,203 - AO353_05410 0.74 -1.3
1,193,203 - AO353_05410 0.74 -0.3
1,193,203 - AO353_05410 0.74 -3.3
1,193,203 - AO353_05410 0.74 -0.2
1,193,203 - AO353_05410 0.74 -2.3
1,193,203 - AO353_05410 0.74 -1.0
1,193,203 - AO353_05410 0.74 -1.5
1,193,203 - AO353_05410 0.74 -2.0
1,193,203 - AO353_05410 0.74 -2.5
1,193,223 + AO353_05410 0.77 -0.5
1,193,224 - AO353_05410 0.77 -0.7
1,193,224 - AO353_05410 0.77 -2.7
1,193,224 - AO353_05410 0.77 -1.0
1,193,448 + -0.8
1,193,625 - AO353_05415 0.23 -0.7
1,193,625 - AO353_05415 0.23 -1.1
1,193,775 + AO353_05415 0.88 -1.3
1,193,775 + AO353_05415 0.88 -0.1
1,193,776 - AO353_05415 0.89 -1.6
1,193,801 + -0.3
1,193,802 - +1.5
1,193,802 - +0.7
1,193,802 - -0.3
1,193,802 - +0.4
1,193,802 - +0.8
1,193,802 - -0.6
1,193,802 - -0.5
1,193,821 + -0.3
1,193,822 - -0.4
1,193,822 - -0.8
1,193,822 - -1.9
1,193,836 + +1.1
1,193,836 + +1.3
1,193,836 + +3.4
1,193,836 + +2.4
1,193,837 - -1.5
1,193,837 - +0.8
1,193,837 - -1.0
1,193,837 - -0.1
1,193,840 + +0.6
1,193,841 - -1.2
1,193,849 + -0.4
1,193,849 + -0.0
1,193,850 - +0.4
1,193,850 - -1.7
1,193,850 - +0.7
1,193,850 - +0.1
1,193,850 - -1.5
1,193,850 - +0.6
1,193,850 - +0.8
1,193,850 - -2.0
1,193,850 - +0.5
1,193,850 - -0.6
1,193,864 + +1.2
1,193,881 + +1.3
1,193,882 - +0.8
1,193,882 - -1.8
1,193,890 + +0.2
1,193,891 - +0.1
1,193,891 - +0.0
1,193,908 + -0.5
1,193,908 + -0.0
1,193,908 + -0.9
1,193,908 + -0.7
1,193,908 + +1.1
1,193,908 + +1.7
1,193,909 - -0.5
1,193,909 - -0.6
1,193,909 - +0.7
1,193,909 - +1.2
1,193,909 - -0.4
1,193,917 - +0.5
1,193,986 - -0.4
1,193,986 - +0.3
1,193,986 - -0.0
1,193,986 - -1.0
1,194,020 + +0.3
1,194,020 + +1.0
1,194,021 - -2.2
1,194,037 + +1.0
1,194,037 + +0.4
1,194,037 + +0.2
1,194,038 - -0.9
1,194,038 - +1.5
1,194,038 - +0.9
1,194,056 + +0.9
1,194,057 - +1.3
1,194,057 - -0.5
1,194,057 - -2.0
1,194,057 - -0.2
1,194,073 + -1.3
1,194,073 + -0.0
1,194,074 - +0.1
1,194,074 - -0.2
1,194,080 + +0.2
1,194,080 + -0.6
1,194,080 + +0.3
1,194,080 + +0.4
1,194,080 + -1.7
1,194,080 + +2.3
1,194,080 + +0.3
1,194,080 + -0.4
1,194,081 - -0.6
1,194,081 - -1.9
1,194,081 - +1.3
1,194,081 - -0.6
1,194,081 - -0.7
1,194,081 - -1.0
1,194,081 - +0.4
1,194,081 - +0.6
1,194,081 - -0.3
1,194,081 - +1.3
1,194,081 - -1.4
1,194,135 + -0.7
1,194,135 + +0.0
1,194,135 + -0.2
1,194,136 - -0.4
1,194,142 + +0.3
1,194,142 + +1.0
1,194,142 + -0.2
1,194,142 + +0.4
1,194,143 - +0.3
1,194,143 - +0.7
1,194,143 - -0.7
1,194,143 - +0.8
1,194,364 + AO353_05420 0.14 -1.3
1,194,365 - AO353_05420 0.14 +0.1
1,194,776 + AO353_05420 0.40 +0.3

Or see this region's nucleotide sequence