Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_04200

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_04195 and AO353_04200 are separated by 42 nucleotidesAO353_04200 and AO353_04205 are separated by 114 nucleotides AO353_04195: AO353_04195 - hypothetical protein, at 899,990 to 901,267 _04195 AO353_04200: AO353_04200 - TetR family transcriptional regulator, at 901,310 to 902,014 _04200 AO353_04205: AO353_04205 - lysine--tRNA ligase, at 902,129 to 903,631 _04205 Position (kb) 901 902 903Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 900.331 kb on + strand, within AO353_04195at 900.331 kb on + strand, within AO353_04195at 900.332 kb on - strand, within AO353_04195at 900.332 kb on - strand, within AO353_04195at 900.332 kb on - strand, within AO353_04195at 900.333 kb on + strand, within AO353_04195at 900.333 kb on + strand, within AO353_04195at 900.333 kb on + strand, within AO353_04195at 900.333 kb on + strand, within AO353_04195at 900.333 kb on + strand, within AO353_04195at 900.333 kb on + strand, within AO353_04195at 900.333 kb on + strand, within AO353_04195at 900.334 kb on - strand, within AO353_04195at 900.334 kb on - strand, within AO353_04195at 900.334 kb on - strand, within AO353_04195at 900.334 kb on - strand, within AO353_04195at 900.334 kb on - strand, within AO353_04195at 900.334 kb on - strand, within AO353_04195at 900.334 kb on - strand, within AO353_04195at 900.334 kb on - strand, within AO353_04195at 900.657 kb on + strand, within AO353_04195at 900.658 kb on - strand, within AO353_04195at 900.658 kb on - strand, within AO353_04195at 900.658 kb on - strand, within AO353_04195at 900.658 kb on - strand, within AO353_04195at 900.834 kb on + strand, within AO353_04195at 900.835 kb on - strand, within AO353_04195at 900.835 kb on - strand, within AO353_04195at 900.906 kb on + strand, within AO353_04195at 900.906 kb on + strand, within AO353_04195at 901.107 kb on + strand, within AO353_04195at 901.108 kb on - strand, within AO353_04195at 901.108 kb on - strand, within AO353_04195at 901.108 kb on - strand, within AO353_04195at 901.108 kb on - strand, within AO353_04195at 901.108 kb on - strand, within AO353_04195at 901.108 kb on - strand, within AO353_04195at 901.108 kb on - strand, within AO353_04195at 901.110 kb on + strand, within AO353_04195at 901.110 kb on + strand, within AO353_04195at 901.111 kb on - strand, within AO353_04195at 901.111 kb on - strand, within AO353_04195at 901.111 kb on - strand, within AO353_04195at 901.111 kb on - strand, within AO353_04195at 901.111 kb on - strand, within AO353_04195at 901.224 kb on - strandat 901.224 kb on - strandat 901.224 kb on - strandat 901.245 kb on - strandat 901.257 kb on + strandat 901.257 kb on + strandat 901.257 kb on + strandat 901.257 kb on + strandat 901.295 kb on + strandat 901.295 kb on + strandat 901.295 kb on + strandat 901.295 kb on + strandat 901.295 kb on + strandat 901.296 kb on - strandat 901.336 kb on + strandat 901.336 kb on + strandat 901.336 kb on + strandat 901.336 kb on + strandat 901.336 kb on + strandat 901.336 kb on + strandat 901.336 kb on + strandat 901.336 kb on + strandat 901.336 kb on + strandat 901.336 kb on + strandat 901.336 kb on + strandat 901.336 kb on + strandat 901.336 kb on + strandat 901.336 kb on + strandat 901.336 kb on + strandat 901.336 kb on + strandat 901.336 kb on + strandat 901.336 kb on + strandat 901.336 kb on + strandat 901.336 kb on + strandat 901.336 kb on + strandat 901.336 kb on + strandat 901.336 kb on + strandat 901.336 kb on + strandat 901.336 kb on + strandat 901.336 kb on + strandat 901.336 kb on + strandat 901.336 kb on + strandat 901.336 kb on + strandat 901.336 kb on + strandat 901.336 kb on + strandat 901.336 kb on + strandat 901.336 kb on + strandat 901.336 kb on + strandat 901.336 kb on + strandat 901.337 kb on - strandat 901.337 kb on - strandat 901.337 kb on - strandat 901.337 kb on - strandat 901.337 kb on - strandat 901.337 kb on - strandat 901.337 kb on - strandat 901.337 kb on - strandat 901.337 kb on - strandat 901.337 kb on - strandat 901.337 kb on - strandat 901.337 kb on - strandat 901.337 kb on - strandat 901.337 kb on - strandat 901.337 kb on - strandat 901.337 kb on - strandat 901.337 kb on - strandat 901.337 kb on - strandat 901.337 kb on - strandat 901.337 kb on - strandat 901.337 kb on - strandat 901.337 kb on - strandat 901.337 kb on - strandat 901.337 kb on - strandat 901.337 kb on - strandat 901.337 kb on - strandat 901.337 kb on - strandat 901.338 kb on + strandat 901.338 kb on + strandat 901.338 kb on + strandat 901.338 kb on + strandat 901.338 kb on + strandat 901.338 kb on + strandat 901.339 kb on - strandat 901.339 kb on - strandat 901.339 kb on - strandat 901.339 kb on - strandat 901.339 kb on - strandat 901.339 kb on - strandat 901.339 kb on - strandat 901.404 kb on + strand, within AO353_04200at 901.405 kb on - strand, within AO353_04200at 901.405 kb on - strand, within AO353_04200at 901.469 kb on + strand, within AO353_04200at 901.469 kb on + strand, within AO353_04200at 901.469 kb on + strand, within AO353_04200at 901.470 kb on - strand, within AO353_04200at 901.617 kb on + strand, within AO353_04200at 901.617 kb on + strand, within AO353_04200at 901.617 kb on + strand, within AO353_04200at 901.617 kb on + strand, within AO353_04200at 901.617 kb on + strand, within AO353_04200at 901.617 kb on + strand, within AO353_04200at 901.617 kb on + strand, within AO353_04200at 901.617 kb on + strand, within AO353_04200at 901.617 kb on + strand, within AO353_04200at 901.618 kb on - strand, within AO353_04200at 901.618 kb on - strand, within AO353_04200at 901.618 kb on - strand, within AO353_04200at 901.618 kb on - strand, within AO353_04200at 901.618 kb on - strand, within AO353_04200at 901.618 kb on - strand, within AO353_04200at 901.618 kb on - strand, within AO353_04200at 901.618 kb on - strand, within AO353_04200at 901.618 kb on - strand, within AO353_04200at 901.618 kb on - strand, within AO353_04200at 901.714 kb on + strand, within AO353_04200at 901.737 kb on + strand, within AO353_04200at 901.737 kb on + strand, within AO353_04200at 901.737 kb on + strand, within AO353_04200at 901.737 kb on + strand, within AO353_04200at 901.737 kb on + strand, within AO353_04200at 901.737 kb on + strand, within AO353_04200at 901.737 kb on + strand, within AO353_04200at 901.738 kb on - strand, within AO353_04200at 901.738 kb on - strand, within AO353_04200at 901.738 kb on - strand, within AO353_04200at 901.738 kb on - strand, within AO353_04200at 901.747 kb on + strand, within AO353_04200at 901.747 kb on + strand, within AO353_04200at 901.758 kb on + strand, within AO353_04200at 901.758 kb on + strand, within AO353_04200at 901.758 kb on + strand, within AO353_04200at 901.758 kb on + strand, within AO353_04200at 901.758 kb on + strand, within AO353_04200at 901.758 kb on + strand, within AO353_04200at 901.758 kb on + strand, within AO353_04200at 901.758 kb on + strand, within AO353_04200at 901.758 kb on + strand, within AO353_04200at 901.758 kb on + strand, within AO353_04200at 901.758 kb on + strand, within AO353_04200at 901.758 kb on + strand, within AO353_04200at 901.758 kb on + strand, within AO353_04200at 901.759 kb on - strand, within AO353_04200at 901.759 kb on - strand, within AO353_04200at 901.803 kb on + strand, within AO353_04200at 901.803 kb on + strand, within AO353_04200at 901.803 kb on + strand, within AO353_04200at 901.803 kb on + strand, within AO353_04200at 901.803 kb on + strand, within AO353_04200at 901.803 kb on + strand, within AO353_04200at 901.804 kb on - strand, within AO353_04200at 901.804 kb on - strand, within AO353_04200at 901.804 kb on - strand, within AO353_04200at 901.804 kb on - strand, within AO353_04200at 901.804 kb on - strand, within AO353_04200at 901.804 kb on - strand, within AO353_04200at 901.804 kb on - strand, within AO353_04200at 901.804 kb on - strand, within AO353_04200at 901.804 kb on - strand, within AO353_04200at 901.806 kb on + strand, within AO353_04200at 901.806 kb on + strand, within AO353_04200at 901.806 kb on + strand, within AO353_04200at 901.806 kb on + strand, within AO353_04200at 901.807 kb on - strand, within AO353_04200at 901.807 kb on - strand, within AO353_04200at 901.807 kb on - strand, within AO353_04200at 901.807 kb on - strand, within AO353_04200at 901.807 kb on - strand, within AO353_04200at 901.807 kb on - strand, within AO353_04200at 901.807 kb on - strand, within AO353_04200at 901.807 kb on - strand, within AO353_04200at 901.859 kb on + strand, within AO353_04200at 901.859 kb on + strand, within AO353_04200at 901.960 kb on - strandat 902.033 kb on + strandat 902.033 kb on + strandat 902.033 kb on + strandat 902.033 kb on + strandat 902.033 kb on + strandat 902.033 kb on + strandat 902.033 kb on + strandat 902.033 kb on + strandat 902.033 kb on + strandat 902.033 kb on + strandat 902.033 kb on + strandat 902.033 kb on + strandat 902.034 kb on - strandat 902.034 kb on - strandat 902.034 kb on - strandat 902.034 kb on - strandat 902.034 kb on - strandat 902.043 kb on + strandat 902.055 kb on + strandat 902.055 kb on + strandat 902.066 kb on + strandat 902.066 kb on + strandat 902.088 kb on + strandat 902.088 kb on + strandat 902.089 kb on - strandat 902.089 kb on - strandat 902.104 kb on - strandat 902.104 kb on - strandat 902.105 kb on + strandat 902.105 kb on + strandat 902.106 kb on - strandat 902.106 kb on - strandat 902.106 kb on - strandat 902.117 kb on + strandat 902.118 kb on - strandat 902.130 kb on + strandat 902.130 kb on + strandat 902.131 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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900,331 + AO353_04195 0.27 +0.5
900,331 + AO353_04195 0.27 -0.1
900,332 - AO353_04195 0.27 -0.0
900,332 - AO353_04195 0.27 +0.1
900,332 - AO353_04195 0.27 -0.1
900,333 + AO353_04195 0.27 +0.0
900,333 + AO353_04195 0.27 +0.3
900,333 + AO353_04195 0.27 -0.2
900,333 + AO353_04195 0.27 -0.4
900,333 + AO353_04195 0.27 +0.5
900,333 + AO353_04195 0.27 +1.5
900,333 + AO353_04195 0.27 -1.0
900,334 - AO353_04195 0.27 -0.9
900,334 - AO353_04195 0.27 +0.1
900,334 - AO353_04195 0.27 -0.0
900,334 - AO353_04195 0.27 +0.1
900,334 - AO353_04195 0.27 -0.6
900,334 - AO353_04195 0.27 -0.3
900,334 - AO353_04195 0.27 +0.1
900,334 - AO353_04195 0.27 -0.7
900,657 + AO353_04195 0.52 +0.1
900,658 - AO353_04195 0.52 -0.9
900,658 - AO353_04195 0.52 +1.3
900,658 - AO353_04195 0.52 +0.4
900,658 - AO353_04195 0.52 -0.6
900,834 + AO353_04195 0.66 -0.6
900,835 - AO353_04195 0.66 -1.1
900,835 - AO353_04195 0.66 -0.6
900,906 + AO353_04195 0.72 -0.9
900,906 + AO353_04195 0.72 -0.6
901,107 + AO353_04195 0.87 -0.3
901,108 - AO353_04195 0.87 +0.6
901,108 - AO353_04195 0.87 +1.6
901,108 - AO353_04195 0.87 -2.7
901,108 - AO353_04195 0.87 +1.3
901,108 - AO353_04195 0.87 -0.7
901,108 - AO353_04195 0.87 +0.0
901,108 - AO353_04195 0.87 -0.3
901,110 + AO353_04195 0.88 +0.1
901,110 + AO353_04195 0.88 +1.4
901,111 - AO353_04195 0.88 +0.5
901,111 - AO353_04195 0.88 +0.3
901,111 - AO353_04195 0.88 -0.5
901,111 - AO353_04195 0.88 +0.9
901,111 - AO353_04195 0.88 -0.0
901,224 - -1.3
901,224 - +1.8
901,224 - +1.4
901,245 - +0.8
901,257 + -0.1
901,257 + +0.7
901,257 + +0.1
901,257 + -0.1
901,295 + +1.5
901,295 + +3.3
901,295 + +1.2
901,295 + +0.1
901,295 + -0.6
901,296 - -0.2
901,336 + +1.3
901,336 + +2.1
901,336 + +2.8
901,336 + -0.2
901,336 + +2.2
901,336 + -0.2
901,336 + +1.2
901,336 + +2.1
901,336 + +2.6
901,336 + +2.1
901,336 + +1.8
901,336 + +2.1
901,336 + +2.9
901,336 + +3.0
901,336 + +2.6
901,336 + +2.1
901,336 + +2.1
901,336 + +1.9
901,336 + +2.4
901,336 + +1.5
901,336 + +2.4
901,336 + +1.0
901,336 + +3.2
901,336 + -0.8
901,336 + +1.4
901,336 + +2.8
901,336 + +2.8
901,336 + +2.1
901,336 + -0.2
901,336 + +2.3
901,336 + +1.2
901,336 + +2.6
901,336 + +1.6
901,336 + +1.8
901,336 + +1.4
901,337 - +2.8
901,337 - +3.1
901,337 - +1.5
901,337 - +1.2
901,337 - +1.4
901,337 - +1.7
901,337 - +0.1
901,337 - +2.1
901,337 - +3.1
901,337 - +1.4
901,337 - +2.9
901,337 - +2.1
901,337 - +1.6
901,337 - +2.8
901,337 - +3.2
901,337 - +1.8
901,337 - +3.0
901,337 - +3.2
901,337 - +2.1
901,337 - +1.5
901,337 - +2.9
901,337 - +2.7
901,337 - +1.3
901,337 - +1.0
901,337 - +2.7
901,337 - +1.8
901,337 - +1.8
901,338 + +0.4
901,338 + +2.5
901,338 + +1.9
901,338 + +3.1
901,338 + +0.0
901,338 + +1.0
901,339 - +2.6
901,339 - +1.4
901,339 - +2.2
901,339 - +3.2
901,339 - +2.3
901,339 - +2.5
901,339 - +1.9
901,404 + AO353_04200 0.13 +0.8
901,405 - AO353_04200 0.13 +2.6
901,405 - AO353_04200 0.13 +3.0
901,469 + AO353_04200 0.23 +2.2
901,469 + AO353_04200 0.23 +1.7
901,469 + AO353_04200 0.23 -1.1
901,470 - AO353_04200 0.23 +1.8
901,617 + AO353_04200 0.44 +2.0
901,617 + AO353_04200 0.44 +2.1
901,617 + AO353_04200 0.44 +1.1
901,617 + AO353_04200 0.44 +2.2
901,617 + AO353_04200 0.44 +2.5
901,617 + AO353_04200 0.44 +2.1
901,617 + AO353_04200 0.44 +1.8
901,617 + AO353_04200 0.44 +2.6
901,617 + AO353_04200 0.44 +3.4
901,618 - AO353_04200 0.44 +1.9
901,618 - AO353_04200 0.44 +2.8
901,618 - AO353_04200 0.44 +0.8
901,618 - AO353_04200 0.44 +1.1
901,618 - AO353_04200 0.44 +2.1
901,618 - AO353_04200 0.44 +3.9
901,618 - AO353_04200 0.44 +1.5
901,618 - AO353_04200 0.44 +2.0
901,618 - AO353_04200 0.44 +3.1
901,618 - AO353_04200 0.44 +2.4
901,714 + AO353_04200 0.57 +3.3
901,737 + AO353_04200 0.61 +2.8
901,737 + AO353_04200 0.61 +1.8
901,737 + AO353_04200 0.61 +1.9
901,737 + AO353_04200 0.61 +3.0
901,737 + AO353_04200 0.61 +2.1
901,737 + AO353_04200 0.61 +2.5
901,737 + AO353_04200 0.61 +0.5
901,738 - AO353_04200 0.61 +2.2
901,738 - AO353_04200 0.61 +2.2
901,738 - AO353_04200 0.61 +1.8
901,738 - AO353_04200 0.61 +3.0
901,747 + AO353_04200 0.62 +2.1
901,747 + AO353_04200 0.62 +2.4
901,758 + AO353_04200 0.64 +0.9
901,758 + AO353_04200 0.64 +2.6
901,758 + AO353_04200 0.64 +2.7
901,758 + AO353_04200 0.64 +1.8
901,758 + AO353_04200 0.64 +2.3
901,758 + AO353_04200 0.64 +2.2
901,758 + AO353_04200 0.64 +0.8
901,758 + AO353_04200 0.64 +3.0
901,758 + AO353_04200 0.64 +2.2
901,758 + AO353_04200 0.64 +1.6
901,758 + AO353_04200 0.64 +1.8
901,758 + AO353_04200 0.64 +1.1
901,758 + AO353_04200 0.64 +2.0
901,759 - AO353_04200 0.64 +3.1
901,759 - AO353_04200 0.64 +3.8
901,803 + AO353_04200 0.70 +1.7
901,803 + AO353_04200 0.70 +3.9
901,803 + AO353_04200 0.70 +2.5
901,803 + AO353_04200 0.70 +1.2
901,803 + AO353_04200 0.70 +2.2
901,803 + AO353_04200 0.70 +1.2
901,804 - AO353_04200 0.70 +3.4
901,804 - AO353_04200 0.70 +0.7
901,804 - AO353_04200 0.70 +1.4
901,804 - AO353_04200 0.70 +1.9
901,804 - AO353_04200 0.70 +1.8
901,804 - AO353_04200 0.70 +1.5
901,804 - AO353_04200 0.70 +2.9
901,804 - AO353_04200 0.70 +3.2
901,804 - AO353_04200 0.70 +3.6
901,806 + AO353_04200 0.70 +2.8
901,806 + AO353_04200 0.70 +1.5
901,806 + AO353_04200 0.70 +1.4
901,806 + AO353_04200 0.70 +1.8
901,807 - AO353_04200 0.70 +3.0
901,807 - AO353_04200 0.70 +2.9
901,807 - AO353_04200 0.70 +2.6
901,807 - AO353_04200 0.70 +2.6
901,807 - AO353_04200 0.70 +2.1
901,807 - AO353_04200 0.70 +1.2
901,807 - AO353_04200 0.70 +2.1
901,807 - AO353_04200 0.70 +1.7
901,859 + AO353_04200 0.78 +2.2
901,859 + AO353_04200 0.78 +3.1
901,960 - +1.0
902,033 + +2.4
902,033 + +2.4
902,033 + +2.6
902,033 + +2.4
902,033 + +2.1
902,033 + +1.3
902,033 + +0.9
902,033 + +2.9
902,033 + +2.7
902,033 + +1.7
902,033 + +2.4
902,033 + +0.6
902,034 - +1.1
902,034 - +1.8
902,034 - +1.0
902,034 - +0.2
902,034 - +1.8
902,043 + +0.8
902,055 + +1.5
902,055 + +1.9
902,066 + +1.4
902,066 + +0.9
902,088 + +1.0
902,088 + +1.3
902,089 - -0.0
902,089 - -1.7
902,104 - -0.4
902,104 - -1.4
902,105 + +2.2
902,105 + +1.7
902,106 - -1.3
902,106 - -0.8
902,106 - -0.0
902,117 + +0.2
902,118 - -1.0
902,130 + +1.8
902,130 + +2.6
902,131 - -0.2

Or see this region's nucleotide sequence