Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_04100 and AO353_04105 are separated by 160 nucleotides AO353_04105 and AO353_04110 are separated by 129 nucleotides
AO353_04100: AO353_04100 - hypothetical protein, at 880,346 to 881,038
_04100
AO353_04105: AO353_04105 - argininosuccinate synthase, at 881,199 to 882,416
_04105
AO353_04110: AO353_04110 - hypothetical protein, at 882,546 to 883,454
_04110
Position (kb) 881
882
883 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 880.291 kb on - strand at 880.320 kb on - strand at 880.320 kb on - strand at 880.466 kb on + strand, within AO353_04100 at 880.466 kb on + strand, within AO353_04100 at 880.467 kb on - strand, within AO353_04100 at 880.467 kb on - strand, within AO353_04100 at 880.467 kb on - strand, within AO353_04100 at 880.496 kb on + strand, within AO353_04100 at 880.497 kb on - strand, within AO353_04100 at 880.517 kb on - strand, within AO353_04100 at 880.531 kb on + strand, within AO353_04100 at 880.536 kb on - strand, within AO353_04100 at 880.547 kb on + strand, within AO353_04100 at 880.636 kb on + strand, within AO353_04100 at 880.684 kb on + strand, within AO353_04100 at 880.694 kb on + strand, within AO353_04100 at 880.727 kb on + strand, within AO353_04100 at 880.727 kb on + strand, within AO353_04100 at 880.729 kb on + strand, within AO353_04100 at 880.729 kb on + strand, within AO353_04100 at 880.729 kb on + strand, within AO353_04100 at 880.729 kb on + strand, within AO353_04100 at 880.729 kb on + strand, within AO353_04100 at 880.729 kb on + strand, within AO353_04100 at 880.729 kb on + strand, within AO353_04100 at 880.729 kb on + strand, within AO353_04100 at 880.750 kb on + strand, within AO353_04100 at 880.750 kb on + strand, within AO353_04100 at 880.751 kb on - strand, within AO353_04100 at 880.751 kb on - strand, within AO353_04100 at 880.786 kb on - strand, within AO353_04100 at 880.985 kb on + strand at 880.996 kb on + strand at 881.006 kb on - strand at 881.086 kb on + strand at 881.162 kb on - strand at 881.285 kb on - strand at 881.285 kb on - strand at 881.285 kb on - strand at 881.309 kb on + strand at 881.310 kb on - strand at 881.310 kb on - strand at 881.310 kb on - strand at 881.374 kb on + strand, within AO353_04105 at 881.470 kb on + strand, within AO353_04105 at 881.470 kb on + strand, within AO353_04105 at 881.471 kb on - strand, within AO353_04105 at 881.471 kb on - strand, within AO353_04105 at 881.485 kb on + strand, within AO353_04105 at 881.485 kb on + strand, within AO353_04105 at 881.485 kb on + strand, within AO353_04105 at 881.485 kb on + strand, within AO353_04105 at 881.486 kb on - strand, within AO353_04105 at 881.486 kb on - strand, within AO353_04105 at 881.486 kb on - strand, within AO353_04105 at 881.486 kb on - strand, within AO353_04105 at 881.486 kb on - strand, within AO353_04105 at 881.486 kb on - strand, within AO353_04105 at 881.486 kb on - strand, within AO353_04105 at 881.489 kb on + strand, within AO353_04105 at 881.489 kb on + strand, within AO353_04105 at 881.489 kb on + strand, within AO353_04105 at 881.489 kb on + strand, within AO353_04105 at 881.489 kb on + strand, within AO353_04105 at 881.490 kb on - strand, within AO353_04105 at 881.490 kb on - strand, within AO353_04105 at 881.490 kb on - strand at 881.590 kb on + strand, within AO353_04105 at 881.617 kb on + strand, within AO353_04105 at 881.740 kb on + strand, within AO353_04105 at 881.740 kb on + strand, within AO353_04105 at 881.756 kb on - strand, within AO353_04105 at 881.756 kb on - strand, within AO353_04105 at 881.804 kb on + strand, within AO353_04105 at 881.804 kb on + strand, within AO353_04105 at 881.804 kb on + strand, within AO353_04105 at 881.804 kb on + strand, within AO353_04105 at 881.804 kb on + strand, within AO353_04105 at 881.804 kb on + strand, within AO353_04105 at 881.804 kb on + strand, within AO353_04105 at 881.804 kb on + strand, within AO353_04105 at 881.805 kb on - strand, within AO353_04105 at 881.805 kb on - strand, within AO353_04105 at 881.805 kb on - strand, within AO353_04105 at 881.805 kb on - strand, within AO353_04105 at 881.805 kb on - strand, within AO353_04105 at 881.805 kb on - strand, within AO353_04105 at 881.805 kb on - strand, within AO353_04105 at 881.828 kb on + strand, within AO353_04105 at 881.828 kb on + strand, within AO353_04105 at 881.829 kb on - strand, within AO353_04105 at 881.852 kb on - strand, within AO353_04105 at 881.938 kb on + strand, within AO353_04105 at 881.938 kb on + strand, within AO353_04105 at 882.017 kb on - strand, within AO353_04105 at 882.017 kb on - strand, within AO353_04105 at 882.143 kb on + strand, within AO353_04105 at 882.154 kb on + strand, within AO353_04105 at 882.154 kb on + strand, within AO353_04105 at 882.166 kb on + strand, within AO353_04105 at 882.235 kb on + strand, within AO353_04105 at 882.235 kb on + strand, within AO353_04105 at 882.235 kb on + strand, within AO353_04105 at 882.236 kb on - strand, within AO353_04105 at 882.246 kb on + strand, within AO353_04105 at 882.247 kb on - strand, within AO353_04105 at 882.332 kb on + strand at 882.332 kb on + strand at 882.332 kb on + strand at 882.332 kb on + strand at 882.332 kb on + strand at 882.332 kb on + strand at 882.332 kb on + strand at 882.333 kb on - strand at 882.333 kb on - strand at 882.333 kb on - strand at 882.333 kb on - strand at 882.333 kb on - strand at 882.333 kb on - strand at 882.333 kb on - strand at 882.333 kb on - strand at 882.333 kb on - strand at 882.333 kb on - strand at 882.333 kb on - strand at 882.333 kb on - strand at 882.334 kb on + strand at 882.334 kb on + strand at 882.334 kb on + strand at 882.334 kb on + strand at 882.334 kb on + strand at 882.334 kb on + strand at 882.334 kb on + strand at 882.334 kb on + strand at 882.334 kb on + strand at 882.334 kb on + strand at 882.334 kb on + strand at 882.334 kb on + strand at 882.334 kb on + strand at 882.334 kb on + strand at 882.334 kb on + strand at 882.334 kb on + strand at 882.334 kb on + strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.339 kb on - strand at 882.386 kb on - strand at 882.386 kb on - strand at 882.405 kb on + strand at 882.405 kb on + strand at 882.405 kb on + strand at 882.405 kb on + strand at 882.406 kb on - strand at 882.406 kb on - strand at 882.406 kb on - strand at 882.406 kb on - strand at 882.406 kb on - strand at 882.406 kb on - strand at 882.477 kb on + strand at 882.477 kb on + strand at 882.495 kb on + strand at 882.495 kb on + strand at 882.495 kb on + strand at 882.495 kb on + strand at 882.495 kb on + strand at 882.495 kb on + strand at 882.495 kb on + strand at 882.516 kb on + strand at 882.516 kb on + strand at 882.516 kb on + strand at 882.517 kb on - strand at 882.517 kb on - strand at 882.517 kb on - strand at 882.517 kb on - strand at 882.517 kb on - strand at 882.596 kb on + strand at 882.952 kb on + strand, within AO353_04110 at 882.952 kb on + strand, within AO353_04110 at 882.953 kb on - strand, within AO353_04110 at 882.953 kb on - strand, within AO353_04110 at 882.989 kb on - strand, within AO353_04110 at 883.057 kb on + strand, within AO353_04110 at 883.057 kb on + strand, within AO353_04110 at 883.058 kb on - strand, within AO353_04110 at 883.058 kb on - strand, within AO353_04110 at 883.249 kb on + strand, within AO353_04110 at 883.249 kb on + strand, within AO353_04110 at 883.249 kb on + strand, within AO353_04110 at 883.250 kb on - strand, within AO353_04110 at 883.250 kb on - strand, within AO353_04110 at 883.250 kb on - strand, within AO353_04110 at 883.250 kb on - strand, within AO353_04110
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 880,291 - -0.7 880,320 - +0.4 880,320 - -0.1 880,466 + AO353_04100 0.17 -1.9 880,466 + AO353_04100 0.17 -2.1 880,467 - AO353_04100 0.17 -0.1 880,467 - AO353_04100 0.17 -0.7 880,467 - AO353_04100 0.17 -0.6 880,496 + AO353_04100 0.22 +1.2 880,497 - AO353_04100 0.22 -1.6 880,517 - AO353_04100 0.25 -0.2 880,531 + AO353_04100 0.27 +0.2 880,536 - AO353_04100 0.27 -0.0 880,547 + AO353_04100 0.29 -0.9 880,636 + AO353_04100 0.42 +0.4 880,684 + AO353_04100 0.49 -1.6 880,694 + AO353_04100 0.50 +0.1 880,727 + AO353_04100 0.55 +0.5 880,727 + AO353_04100 0.55 -2.0 880,729 + AO353_04100 0.55 +0.2 880,729 + AO353_04100 0.55 -2.3 880,729 + AO353_04100 0.55 -1.9 880,729 + AO353_04100 0.55 -0.1 880,729 + AO353_04100 0.55 -0.9 880,729 + AO353_04100 0.55 +0.5 880,729 + AO353_04100 0.55 +1.0 880,729 + AO353_04100 0.55 -1.2 880,750 + AO353_04100 0.58 +0.6 880,750 + AO353_04100 0.58 -0.5 880,751 - AO353_04100 0.58 -0.9 880,751 - AO353_04100 0.58 +0.3 880,786 - AO353_04100 0.63 -1.9 880,985 + +0.4 880,996 + +1.5 881,006 - +1.9 881,086 + -0.6 881,162 - -0.0 881,285 - -1.5 881,285 - -0.9 881,285 - -0.0 881,309 + -0.7 881,310 - -0.2 881,310 - -0.9 881,310 - -1.4 881,374 + AO353_04105 0.14 -0.4 881,470 + AO353_04105 0.22 -0.6 881,470 + AO353_04105 0.22 +0.8 881,471 - AO353_04105 0.22 -0.4 881,471 - AO353_04105 0.22 +0.8 881,485 + AO353_04105 0.23 -1.8 881,485 + AO353_04105 0.23 -1.2 881,485 + AO353_04105 0.23 +0.8 881,485 + AO353_04105 0.23 -1.8 881,486 - AO353_04105 0.24 +0.4 881,486 - AO353_04105 0.24 -0.7 881,486 - AO353_04105 0.24 -0.8 881,486 - AO353_04105 0.24 -1.0 881,486 - AO353_04105 0.24 -0.9 881,486 - AO353_04105 0.24 -1.9 881,486 - AO353_04105 0.24 +0.3 881,489 + AO353_04105 0.24 -1.8 881,489 + AO353_04105 0.24 -0.4 881,489 + AO353_04105 0.24 -0.9 881,489 + AO353_04105 0.24 -1.1 881,489 + AO353_04105 0.24 -0.2 881,490 - AO353_04105 0.24 -1.0 881,490 - AO353_04105 0.24 +0.2 881,490 - +1.2 881,590 + AO353_04105 0.32 -1.3 881,617 + AO353_04105 0.34 -0.6 881,740 + AO353_04105 0.44 -0.7 881,740 + AO353_04105 0.44 -1.4 881,756 - AO353_04105 0.46 -1.2 881,756 - AO353_04105 0.46 -2.8 881,804 + AO353_04105 0.50 -1.5 881,804 + AO353_04105 0.50 -0.8 881,804 + AO353_04105 0.50 +0.8 881,804 + AO353_04105 0.50 -0.0 881,804 + AO353_04105 0.50 -1.2 881,804 + AO353_04105 0.50 -1.0 881,804 + AO353_04105 0.50 +1.2 881,804 + AO353_04105 0.50 -2.5 881,805 - AO353_04105 0.50 +0.4 881,805 - AO353_04105 0.50 -1.3 881,805 - AO353_04105 0.50 -2.2 881,805 - AO353_04105 0.50 -0.2 881,805 - AO353_04105 0.50 -1.7 881,805 - AO353_04105 0.50 -0.4 881,805 - AO353_04105 0.50 -1.1 881,828 + AO353_04105 0.52 -1.9 881,828 + AO353_04105 0.52 +0.8 881,829 - AO353_04105 0.52 -0.4 881,852 - AO353_04105 0.54 -0.2 881,938 + AO353_04105 0.61 -0.5 881,938 + AO353_04105 0.61 -2.1 882,017 - AO353_04105 0.67 -1.6 882,017 - AO353_04105 0.67 -1.8 882,143 + AO353_04105 0.78 -1.3 882,154 + AO353_04105 0.78 -1.7 882,154 + AO353_04105 0.78 -1.4 882,166 + AO353_04105 0.79 +0.2 882,235 + AO353_04105 0.85 -0.0 882,235 + AO353_04105 0.85 -1.3 882,235 + AO353_04105 0.85 -1.0 882,236 - AO353_04105 0.85 -1.1 882,246 + AO353_04105 0.86 +0.2 882,247 - AO353_04105 0.86 +0.0 882,332 + -0.0 882,332 + -0.6 882,332 + -0.1 882,332 + -0.4 882,332 + -1.7 882,332 + -1.1 882,332 + -1.3 882,333 - -2.2 882,333 - -1.0 882,333 - -1.7 882,333 - -1.6 882,333 - -2.6 882,333 - -0.6 882,333 - -0.6 882,333 - -2.3 882,333 - +0.2 882,333 - -0.6 882,333 - -0.8 882,333 - +0.2 882,334 + -1.8 882,334 + -1.3 882,334 + +0.4 882,334 + -1.1 882,334 + +0.8 882,334 + -1.0 882,334 + -1.6 882,334 + +0.4 882,334 + -2.5 882,334 + -2.2 882,334 + +1.8 882,334 + -0.4 882,334 + -0.0 882,334 + -1.2 882,334 + -1.9 882,334 + -0.9 882,334 + -2.1 882,335 - -1.7 882,335 - -1.6 882,335 - -2.9 882,335 - -1.6 882,335 - -0.6 882,335 - -1.0 882,335 - -2.0 882,335 - -1.9 882,335 - -1.2 882,335 - -0.0 882,335 - -1.5 882,335 - -1.6 882,335 - -0.8 882,335 - -1.2 882,335 - -0.4 882,335 - -0.8 882,335 - +0.3 882,335 - -1.5 882,335 - -1.1 882,339 - -0.6 882,386 - -0.2 882,386 - -2.3 882,405 + -0.6 882,405 + -0.7 882,405 + -2.6 882,405 + -0.2 882,406 - -0.8 882,406 - -2.3 882,406 - +0.1 882,406 - -1.4 882,406 - -0.4 882,406 - -1.7 882,477 + -0.0 882,477 + -1.5 882,495 + -0.4 882,495 + +0.7 882,495 + -1.1 882,495 + -0.7 882,495 + +0.8 882,495 + -1.0 882,495 + +1.0 882,516 + -0.9 882,516 + +0.7 882,516 + +1.2 882,517 - +0.2 882,517 - +0.9 882,517 - -0.4 882,517 - +1.2 882,517 - -1.0 882,596 + +1.2 882,952 + AO353_04110 0.45 -2.0 882,952 + AO353_04110 0.45 +0.3 882,953 - AO353_04110 0.45 +0.1 882,953 - AO353_04110 0.45 -0.9 882,989 - AO353_04110 0.49 +1.8 883,057 + AO353_04110 0.56 -0.5 883,057 + AO353_04110 0.56 +0.4 883,058 - AO353_04110 0.56 -1.0 883,058 - AO353_04110 0.56 +1.2 883,249 + AO353_04110 0.77 +0.8 883,249 + AO353_04110 0.77 -0.9 883,249 + AO353_04110 0.77 -1.9 883,250 - AO353_04110 0.77 +0.7 883,250 - AO353_04110 0.77 +0.1 883,250 - AO353_04110 0.77 -0.7 883,250 - AO353_04110 0.77 +0.8
Or see this region's nucleotide sequence