Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_04105

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_04100 and AO353_04105 are separated by 160 nucleotidesAO353_04105 and AO353_04110 are separated by 129 nucleotides AO353_04100: AO353_04100 - hypothetical protein, at 880,346 to 881,038 _04100 AO353_04105: AO353_04105 - argininosuccinate synthase, at 881,199 to 882,416 _04105 AO353_04110: AO353_04110 - hypothetical protein, at 882,546 to 883,454 _04110 Position (kb) 881 882 883Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 880.291 kb on - strandat 880.320 kb on - strandat 880.320 kb on - strandat 880.466 kb on + strand, within AO353_04100at 880.466 kb on + strand, within AO353_04100at 880.467 kb on - strand, within AO353_04100at 880.467 kb on - strand, within AO353_04100at 880.467 kb on - strand, within AO353_04100at 880.496 kb on + strand, within AO353_04100at 880.497 kb on - strand, within AO353_04100at 880.517 kb on - strand, within AO353_04100at 880.531 kb on + strand, within AO353_04100at 880.536 kb on - strand, within AO353_04100at 880.547 kb on + strand, within AO353_04100at 880.636 kb on + strand, within AO353_04100at 880.684 kb on + strand, within AO353_04100at 880.694 kb on + strand, within AO353_04100at 880.727 kb on + strand, within AO353_04100at 880.727 kb on + strand, within AO353_04100at 880.729 kb on + strand, within AO353_04100at 880.729 kb on + strand, within AO353_04100at 880.729 kb on + strand, within AO353_04100at 880.729 kb on + strand, within AO353_04100at 880.729 kb on + strand, within AO353_04100at 880.729 kb on + strand, within AO353_04100at 880.729 kb on + strand, within AO353_04100at 880.729 kb on + strand, within AO353_04100at 880.750 kb on + strand, within AO353_04100at 880.750 kb on + strand, within AO353_04100at 880.751 kb on - strand, within AO353_04100at 880.751 kb on - strand, within AO353_04100at 880.786 kb on - strand, within AO353_04100at 880.985 kb on + strandat 880.996 kb on + strandat 881.006 kb on - strandat 881.086 kb on + strandat 881.162 kb on - strandat 881.285 kb on - strandat 881.285 kb on - strandat 881.285 kb on - strandat 881.309 kb on + strandat 881.310 kb on - strandat 881.310 kb on - strandat 881.310 kb on - strandat 881.374 kb on + strand, within AO353_04105at 881.470 kb on + strand, within AO353_04105at 881.470 kb on + strand, within AO353_04105at 881.471 kb on - strand, within AO353_04105at 881.471 kb on - strand, within AO353_04105at 881.485 kb on + strand, within AO353_04105at 881.485 kb on + strand, within AO353_04105at 881.485 kb on + strand, within AO353_04105at 881.485 kb on + strand, within AO353_04105at 881.486 kb on - strand, within AO353_04105at 881.486 kb on - strand, within AO353_04105at 881.486 kb on - strand, within AO353_04105at 881.486 kb on - strand, within AO353_04105at 881.486 kb on - strand, within AO353_04105at 881.486 kb on - strand, within AO353_04105at 881.486 kb on - strand, within AO353_04105at 881.489 kb on + strand, within AO353_04105at 881.489 kb on + strand, within AO353_04105at 881.489 kb on + strand, within AO353_04105at 881.489 kb on + strand, within AO353_04105at 881.489 kb on + strand, within AO353_04105at 881.490 kb on - strand, within AO353_04105at 881.490 kb on - strand, within AO353_04105at 881.490 kb on - strandat 881.590 kb on + strand, within AO353_04105at 881.617 kb on + strand, within AO353_04105at 881.740 kb on + strand, within AO353_04105at 881.740 kb on + strand, within AO353_04105at 881.756 kb on - strand, within AO353_04105at 881.756 kb on - strand, within AO353_04105at 881.804 kb on + strand, within AO353_04105at 881.804 kb on + strand, within AO353_04105at 881.804 kb on + strand, within AO353_04105at 881.804 kb on + strand, within AO353_04105at 881.804 kb on + strand, within AO353_04105at 881.804 kb on + strand, within AO353_04105at 881.804 kb on + strand, within AO353_04105at 881.804 kb on + strand, within AO353_04105at 881.805 kb on - strand, within AO353_04105at 881.805 kb on - strand, within AO353_04105at 881.805 kb on - strand, within AO353_04105at 881.805 kb on - strand, within AO353_04105at 881.805 kb on - strand, within AO353_04105at 881.805 kb on - strand, within AO353_04105at 881.805 kb on - strand, within AO353_04105at 881.828 kb on + strand, within AO353_04105at 881.828 kb on + strand, within AO353_04105at 881.829 kb on - strand, within AO353_04105at 881.852 kb on - strand, within AO353_04105at 881.938 kb on + strand, within AO353_04105at 881.938 kb on + strand, within AO353_04105at 882.017 kb on - strand, within AO353_04105at 882.017 kb on - strand, within AO353_04105at 882.143 kb on + strand, within AO353_04105at 882.154 kb on + strand, within AO353_04105at 882.154 kb on + strand, within AO353_04105at 882.166 kb on + strand, within AO353_04105at 882.235 kb on + strand, within AO353_04105at 882.235 kb on + strand, within AO353_04105at 882.235 kb on + strand, within AO353_04105at 882.236 kb on - strand, within AO353_04105at 882.246 kb on + strand, within AO353_04105at 882.247 kb on - strand, within AO353_04105at 882.332 kb on + strandat 882.332 kb on + strandat 882.332 kb on + strandat 882.332 kb on + strandat 882.332 kb on + strandat 882.332 kb on + strandat 882.332 kb on + strandat 882.333 kb on - strandat 882.333 kb on - strandat 882.333 kb on - strandat 882.333 kb on - strandat 882.333 kb on - strandat 882.333 kb on - strandat 882.333 kb on - strandat 882.333 kb on - strandat 882.333 kb on - strandat 882.333 kb on - strandat 882.333 kb on - strandat 882.333 kb on - strandat 882.334 kb on + strandat 882.334 kb on + strandat 882.334 kb on + strandat 882.334 kb on + strandat 882.334 kb on + strandat 882.334 kb on + strandat 882.334 kb on + strandat 882.334 kb on + strandat 882.334 kb on + strandat 882.334 kb on + strandat 882.334 kb on + strandat 882.334 kb on + strandat 882.334 kb on + strandat 882.334 kb on + strandat 882.334 kb on + strandat 882.334 kb on + strandat 882.334 kb on + strandat 882.335 kb on - strandat 882.335 kb on - strandat 882.335 kb on - strandat 882.335 kb on - strandat 882.335 kb on - strandat 882.335 kb on - strandat 882.335 kb on - strandat 882.335 kb on - strandat 882.335 kb on - strandat 882.335 kb on - strandat 882.335 kb on - strandat 882.335 kb on - strandat 882.335 kb on - strandat 882.335 kb on - strandat 882.335 kb on - strandat 882.335 kb on - strandat 882.335 kb on - strandat 882.335 kb on - strandat 882.335 kb on - strandat 882.339 kb on - strandat 882.386 kb on - strandat 882.386 kb on - strandat 882.405 kb on + strandat 882.405 kb on + strandat 882.405 kb on + strandat 882.405 kb on + strandat 882.406 kb on - strandat 882.406 kb on - strandat 882.406 kb on - strandat 882.406 kb on - strandat 882.406 kb on - strandat 882.406 kb on - strandat 882.477 kb on + strandat 882.477 kb on + strandat 882.495 kb on + strandat 882.495 kb on + strandat 882.495 kb on + strandat 882.495 kb on + strandat 882.495 kb on + strandat 882.495 kb on + strandat 882.495 kb on + strandat 882.516 kb on + strandat 882.516 kb on + strandat 882.516 kb on + strandat 882.517 kb on - strandat 882.517 kb on - strandat 882.517 kb on - strandat 882.517 kb on - strandat 882.517 kb on - strandat 882.596 kb on + strandat 882.952 kb on + strand, within AO353_04110at 882.952 kb on + strand, within AO353_04110at 882.953 kb on - strand, within AO353_04110at 882.953 kb on - strand, within AO353_04110at 882.989 kb on - strand, within AO353_04110at 883.057 kb on + strand, within AO353_04110at 883.057 kb on + strand, within AO353_04110at 883.058 kb on - strand, within AO353_04110at 883.058 kb on - strand, within AO353_04110at 883.249 kb on + strand, within AO353_04110at 883.249 kb on + strand, within AO353_04110at 883.249 kb on + strand, within AO353_04110at 883.250 kb on - strand, within AO353_04110at 883.250 kb on - strand, within AO353_04110at 883.250 kb on - strand, within AO353_04110at 883.250 kb on - strand, within AO353_04110

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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880,291 - -0.7
880,320 - +0.4
880,320 - -0.1
880,466 + AO353_04100 0.17 -1.9
880,466 + AO353_04100 0.17 -2.1
880,467 - AO353_04100 0.17 -0.1
880,467 - AO353_04100 0.17 -0.7
880,467 - AO353_04100 0.17 -0.6
880,496 + AO353_04100 0.22 +1.2
880,497 - AO353_04100 0.22 -1.6
880,517 - AO353_04100 0.25 -0.2
880,531 + AO353_04100 0.27 +0.2
880,536 - AO353_04100 0.27 -0.0
880,547 + AO353_04100 0.29 -0.9
880,636 + AO353_04100 0.42 +0.4
880,684 + AO353_04100 0.49 -1.6
880,694 + AO353_04100 0.50 +0.1
880,727 + AO353_04100 0.55 +0.5
880,727 + AO353_04100 0.55 -2.0
880,729 + AO353_04100 0.55 +0.2
880,729 + AO353_04100 0.55 -2.3
880,729 + AO353_04100 0.55 -1.9
880,729 + AO353_04100 0.55 -0.1
880,729 + AO353_04100 0.55 -0.9
880,729 + AO353_04100 0.55 +0.5
880,729 + AO353_04100 0.55 +1.0
880,729 + AO353_04100 0.55 -1.2
880,750 + AO353_04100 0.58 +0.6
880,750 + AO353_04100 0.58 -0.5
880,751 - AO353_04100 0.58 -0.9
880,751 - AO353_04100 0.58 +0.3
880,786 - AO353_04100 0.63 -1.9
880,985 + +0.4
880,996 + +1.5
881,006 - +1.9
881,086 + -0.6
881,162 - -0.0
881,285 - -1.5
881,285 - -0.9
881,285 - -0.0
881,309 + -0.7
881,310 - -0.2
881,310 - -0.9
881,310 - -1.4
881,374 + AO353_04105 0.14 -0.4
881,470 + AO353_04105 0.22 -0.6
881,470 + AO353_04105 0.22 +0.8
881,471 - AO353_04105 0.22 -0.4
881,471 - AO353_04105 0.22 +0.8
881,485 + AO353_04105 0.23 -1.8
881,485 + AO353_04105 0.23 -1.2
881,485 + AO353_04105 0.23 +0.8
881,485 + AO353_04105 0.23 -1.8
881,486 - AO353_04105 0.24 +0.4
881,486 - AO353_04105 0.24 -0.7
881,486 - AO353_04105 0.24 -0.8
881,486 - AO353_04105 0.24 -1.0
881,486 - AO353_04105 0.24 -0.9
881,486 - AO353_04105 0.24 -1.9
881,486 - AO353_04105 0.24 +0.3
881,489 + AO353_04105 0.24 -1.8
881,489 + AO353_04105 0.24 -0.4
881,489 + AO353_04105 0.24 -0.9
881,489 + AO353_04105 0.24 -1.1
881,489 + AO353_04105 0.24 -0.2
881,490 - AO353_04105 0.24 -1.0
881,490 - AO353_04105 0.24 +0.2
881,490 - +1.2
881,590 + AO353_04105 0.32 -1.3
881,617 + AO353_04105 0.34 -0.6
881,740 + AO353_04105 0.44 -0.7
881,740 + AO353_04105 0.44 -1.4
881,756 - AO353_04105 0.46 -1.2
881,756 - AO353_04105 0.46 -2.8
881,804 + AO353_04105 0.50 -1.5
881,804 + AO353_04105 0.50 -0.8
881,804 + AO353_04105 0.50 +0.8
881,804 + AO353_04105 0.50 -0.0
881,804 + AO353_04105 0.50 -1.2
881,804 + AO353_04105 0.50 -1.0
881,804 + AO353_04105 0.50 +1.2
881,804 + AO353_04105 0.50 -2.5
881,805 - AO353_04105 0.50 +0.4
881,805 - AO353_04105 0.50 -1.3
881,805 - AO353_04105 0.50 -2.2
881,805 - AO353_04105 0.50 -0.2
881,805 - AO353_04105 0.50 -1.7
881,805 - AO353_04105 0.50 -0.4
881,805 - AO353_04105 0.50 -1.1
881,828 + AO353_04105 0.52 -1.9
881,828 + AO353_04105 0.52 +0.8
881,829 - AO353_04105 0.52 -0.4
881,852 - AO353_04105 0.54 -0.2
881,938 + AO353_04105 0.61 -0.5
881,938 + AO353_04105 0.61 -2.1
882,017 - AO353_04105 0.67 -1.6
882,017 - AO353_04105 0.67 -1.8
882,143 + AO353_04105 0.78 -1.3
882,154 + AO353_04105 0.78 -1.7
882,154 + AO353_04105 0.78 -1.4
882,166 + AO353_04105 0.79 +0.2
882,235 + AO353_04105 0.85 -0.0
882,235 + AO353_04105 0.85 -1.3
882,235 + AO353_04105 0.85 -1.0
882,236 - AO353_04105 0.85 -1.1
882,246 + AO353_04105 0.86 +0.2
882,247 - AO353_04105 0.86 +0.0
882,332 + -0.0
882,332 + -0.6
882,332 + -0.1
882,332 + -0.4
882,332 + -1.7
882,332 + -1.1
882,332 + -1.3
882,333 - -2.2
882,333 - -1.0
882,333 - -1.7
882,333 - -1.6
882,333 - -2.6
882,333 - -0.6
882,333 - -0.6
882,333 - -2.3
882,333 - +0.2
882,333 - -0.6
882,333 - -0.8
882,333 - +0.2
882,334 + -1.8
882,334 + -1.3
882,334 + +0.4
882,334 + -1.1
882,334 + +0.8
882,334 + -1.0
882,334 + -1.6
882,334 + +0.4
882,334 + -2.5
882,334 + -2.2
882,334 + +1.8
882,334 + -0.4
882,334 + -0.0
882,334 + -1.2
882,334 + -1.9
882,334 + -0.9
882,334 + -2.1
882,335 - -1.7
882,335 - -1.6
882,335 - -2.9
882,335 - -1.6
882,335 - -0.6
882,335 - -1.0
882,335 - -2.0
882,335 - -1.9
882,335 - -1.2
882,335 - -0.0
882,335 - -1.5
882,335 - -1.6
882,335 - -0.8
882,335 - -1.2
882,335 - -0.4
882,335 - -0.8
882,335 - +0.3
882,335 - -1.5
882,335 - -1.1
882,339 - -0.6
882,386 - -0.2
882,386 - -2.3
882,405 + -0.6
882,405 + -0.7
882,405 + -2.6
882,405 + -0.2
882,406 - -0.8
882,406 - -2.3
882,406 - +0.1
882,406 - -1.4
882,406 - -0.4
882,406 - -1.7
882,477 + -0.0
882,477 + -1.5
882,495 + -0.4
882,495 + +0.7
882,495 + -1.1
882,495 + -0.7
882,495 + +0.8
882,495 + -1.0
882,495 + +1.0
882,516 + -0.9
882,516 + +0.7
882,516 + +1.2
882,517 - +0.2
882,517 - +0.9
882,517 - -0.4
882,517 - +1.2
882,517 - -1.0
882,596 + +1.2
882,952 + AO353_04110 0.45 -2.0
882,952 + AO353_04110 0.45 +0.3
882,953 - AO353_04110 0.45 +0.1
882,953 - AO353_04110 0.45 -0.9
882,989 - AO353_04110 0.49 +1.8
883,057 + AO353_04110 0.56 -0.5
883,057 + AO353_04110 0.56 +0.4
883,058 - AO353_04110 0.56 -1.0
883,058 - AO353_04110 0.56 +1.2
883,249 + AO353_04110 0.77 +0.8
883,249 + AO353_04110 0.77 -0.9
883,249 + AO353_04110 0.77 -1.9
883,250 - AO353_04110 0.77 +0.7
883,250 - AO353_04110 0.77 +0.1
883,250 - AO353_04110 0.77 -0.7
883,250 - AO353_04110 0.77 +0.8

Or see this region's nucleotide sequence