Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03535 and AO353_03540 are separated by 1 nucleotides AO353_03540 and AO353_03545 are separated by 169 nucleotides AO353_03545 and AO353_03550 are separated by 6 nucleotides AO353_03550 and AO353_03555 are separated by 52 nucleotides
AO353_03535: AO353_03535 - 7-cyano-7-deazaguanine synthase, at 757,826 to 758,518
_03535
AO353_03540: AO353_03540 - 7-carboxy-7-deazaguanine synthase, at 758,520 to 759,167
_03540
AO353_03545: AO353_03545 - hypothetical protein, at 759,337 to 760,170
_03545
AO353_03550: AO353_03550 - peptidoglycan-binding protein, at 760,177 to 760,674
_03550
AO353_03555: AO353_03555 - translocation protein TolB, at 760,727 to 761,986
_03555
Position (kb) 759
760
761 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 758.348 kb on + strand, within AO353_03535 at 758.391 kb on + strand, within AO353_03535 at 758.392 kb on - strand, within AO353_03535 at 758.392 kb on - strand, within AO353_03535 at 758.409 kb on + strand, within AO353_03535 at 758.409 kb on + strand, within AO353_03535 at 758.409 kb on + strand, within AO353_03535 at 758.410 kb on - strand, within AO353_03535 at 758.410 kb on - strand, within AO353_03535 at 758.410 kb on - strand, within AO353_03535 at 758.410 kb on - strand, within AO353_03535 at 758.497 kb on + strand at 758.497 kb on + strand at 758.498 kb on - strand at 758.498 kb on - strand at 758.498 kb on - strand at 758.548 kb on + strand at 758.548 kb on + strand at 758.548 kb on + strand at 758.548 kb on + strand at 758.549 kb on - strand at 758.549 kb on - strand at 758.549 kb on - strand at 758.549 kb on - strand at 758.549 kb on - strand at 758.549 kb on - strand at 758.552 kb on + strand at 758.552 kb on + strand at 758.552 kb on + strand at 758.552 kb on + strand at 758.552 kb on + strand at 758.553 kb on - strand at 758.553 kb on - strand at 758.553 kb on - strand at 758.553 kb on - strand at 758.553 kb on - strand at 758.553 kb on - strand at 758.553 kb on - strand at 758.678 kb on - strand, within AO353_03540 at 758.708 kb on - strand, within AO353_03540 at 758.773 kb on + strand, within AO353_03540 at 758.852 kb on + strand, within AO353_03540 at 758.853 kb on - strand, within AO353_03540 at 758.901 kb on + strand, within AO353_03540 at 758.901 kb on + strand, within AO353_03540 at 758.901 kb on + strand, within AO353_03540 at 758.901 kb on + strand, within AO353_03540 at 758.901 kb on + strand, within AO353_03540 at 758.901 kb on + strand, within AO353_03540 at 758.901 kb on + strand, within AO353_03540 at 758.901 kb on + strand, within AO353_03540 at 758.902 kb on - strand, within AO353_03540 at 758.902 kb on - strand, within AO353_03540 at 758.927 kb on + strand, within AO353_03540 at 758.927 kb on + strand, within AO353_03540 at 758.928 kb on - strand, within AO353_03540 at 758.965 kb on + strand, within AO353_03540 at 759.037 kb on + strand, within AO353_03540 at 759.037 kb on + strand, within AO353_03540 at 759.037 kb on + strand, within AO353_03540 at 759.038 kb on - strand, within AO353_03540 at 759.038 kb on - strand, within AO353_03540 at 759.038 kb on - strand, within AO353_03540 at 759.053 kb on - strand, within AO353_03540 at 759.090 kb on + strand, within AO353_03540 at 759.091 kb on - strand, within AO353_03540 at 759.091 kb on - strand, within AO353_03540 at 759.091 kb on - strand, within AO353_03540 at 759.091 kb on - strand, within AO353_03540 at 759.134 kb on - strand at 759.167 kb on + strand at 759.167 kb on + strand at 759.167 kb on + strand at 759.168 kb on - strand at 759.168 kb on - strand at 759.168 kb on - strand at 759.189 kb on + strand at 759.189 kb on + strand at 759.190 kb on - strand at 759.190 kb on - strand at 759.190 kb on - strand at 759.190 kb on - strand at 759.219 kb on + strand at 759.219 kb on + strand at 759.219 kb on + strand at 759.219 kb on + strand at 759.220 kb on - strand at 759.220 kb on - strand at 759.220 kb on - strand at 759.220 kb on - strand at 759.319 kb on + strand at 759.320 kb on - strand at 759.320 kb on - strand at 759.338 kb on + strand at 759.338 kb on + strand at 759.338 kb on + strand at 759.338 kb on + strand at 759.338 kb on + strand at 759.338 kb on + strand at 759.338 kb on + strand at 759.338 kb on + strand at 759.338 kb on + strand at 759.338 kb on + strand at 759.339 kb on - strand at 759.339 kb on - strand at 759.339 kb on - strand at 759.339 kb on - strand at 759.339 kb on - strand at 759.339 kb on - strand at 759.339 kb on - strand at 759.339 kb on - strand at 759.339 kb on - strand at 759.339 kb on - strand at 759.339 kb on - strand at 759.339 kb on - strand at 759.339 kb on - strand at 759.339 kb on - strand at 759.339 kb on - strand at 759.339 kb on - strand at 759.339 kb on - strand at 759.381 kb on + strand at 759.432 kb on + strand, within AO353_03545 at 759.451 kb on + strand, within AO353_03545 at 759.451 kb on + strand, within AO353_03545 at 759.452 kb on - strand, within AO353_03545 at 759.452 kb on - strand, within AO353_03545 at 759.467 kb on + strand, within AO353_03545 at 759.467 kb on + strand, within AO353_03545 at 759.468 kb on - strand, within AO353_03545 at 759.468 kb on - strand, within AO353_03545 at 759.468 kb on - strand, within AO353_03545 at 759.500 kb on + strand, within AO353_03545 at 759.501 kb on - strand, within AO353_03545 at 759.578 kb on + strand, within AO353_03545 at 759.579 kb on - strand, within AO353_03545 at 759.612 kb on - strand, within AO353_03545 at 759.689 kb on + strand, within AO353_03545 at 759.689 kb on + strand, within AO353_03545 at 759.689 kb on + strand, within AO353_03545 at 759.690 kb on - strand, within AO353_03545 at 759.690 kb on - strand, within AO353_03545 at 759.690 kb on - strand, within AO353_03545 at 759.690 kb on - strand, within AO353_03545 at 759.692 kb on + strand, within AO353_03545 at 759.692 kb on + strand, within AO353_03545 at 759.692 kb on + strand, within AO353_03545 at 759.693 kb on - strand, within AO353_03545 at 759.693 kb on - strand, within AO353_03545 at 759.693 kb on - strand, within AO353_03545 at 759.693 kb on - strand, within AO353_03545 at 759.783 kb on + strand, within AO353_03545 at 759.846 kb on + strand, within AO353_03545 at 759.898 kb on + strand, within AO353_03545 at 759.899 kb on - strand, within AO353_03545 at 759.899 kb on - strand, within AO353_03545 at 759.899 kb on - strand, within AO353_03545 at 759.899 kb on - strand, within AO353_03545 at 759.899 kb on - strand, within AO353_03545 at 759.899 kb on - strand, within AO353_03545 at 760.019 kb on + strand, within AO353_03545 at 760.032 kb on + strand, within AO353_03545 at 760.032 kb on + strand, within AO353_03545 at 760.038 kb on - strand, within AO353_03545 at 760.071 kb on + strand, within AO353_03545 at 760.071 kb on + strand, within AO353_03545 at 760.071 kb on + strand, within AO353_03545 at 760.071 kb on + strand, within AO353_03545 at 760.071 kb on + strand, within AO353_03545 at 760.071 kb on + strand, within AO353_03545 at 760.072 kb on - strand, within AO353_03545 at 760.072 kb on - strand, within AO353_03545 at 760.072 kb on - strand, within AO353_03545 at 760.072 kb on - strand, within AO353_03545 at 760.072 kb on - strand, within AO353_03545 at 760.072 kb on - strand, within AO353_03545 at 760.072 kb on - strand, within AO353_03545 at 760.147 kb on + strand at 760.147 kb on + strand at 760.147 kb on + strand at 760.148 kb on - strand at 760.148 kb on - strand at 760.178 kb on + strand at 760.178 kb on + strand at 760.178 kb on + strand at 760.178 kb on + strand at 760.178 kb on + strand at 760.179 kb on - strand at 760.179 kb on - strand at 760.179 kb on - strand at 760.179 kb on - strand at 760.182 kb on + strand at 760.183 kb on - strand at 760.183 kb on - strand at 760.183 kb on - strand at 760.183 kb on - strand at 760.183 kb on - strand at 760.687 kb on - strand at 760.687 kb on - strand at 760.705 kb on - strand at 760.705 kb on - strand at 760.705 kb on - strand at 760.705 kb on - strand at 760.705 kb on - strand at 760.709 kb on - strand at 760.709 kb on - strand at 760.738 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 758,348 + AO353_03535 0.75 -0.3 758,391 + AO353_03535 0.82 +0.5 758,392 - AO353_03535 0.82 -0.8 758,392 - AO353_03535 0.82 +1.0 758,409 + AO353_03535 0.84 +0.2 758,409 + AO353_03535 0.84 +0.4 758,409 + AO353_03535 0.84 -0.9 758,410 - AO353_03535 0.84 -0.2 758,410 - AO353_03535 0.84 -2.0 758,410 - AO353_03535 0.84 -0.0 758,410 - AO353_03535 0.84 +0.7 758,497 + -1.3 758,497 + -0.3 758,498 - +0.2 758,498 - +0.6 758,498 - +1.1 758,548 + +0.1 758,548 + -0.2 758,548 + -0.8 758,548 + +1.2 758,549 - +2.3 758,549 - +0.5 758,549 - -0.6 758,549 - -0.4 758,549 - +0.2 758,549 - +0.1 758,552 + +0.3 758,552 + -0.6 758,552 + -0.4 758,552 + -1.1 758,552 + +0.7 758,553 - +0.5 758,553 - +0.4 758,553 - +0.2 758,553 - +0.7 758,553 - +0.6 758,553 - +1.7 758,553 - +1.7 758,678 - AO353_03540 0.24 -0.5 758,708 - AO353_03540 0.29 +0.2 758,773 + AO353_03540 0.39 -0.3 758,852 + AO353_03540 0.51 -0.2 758,853 - AO353_03540 0.51 +1.4 758,901 + AO353_03540 0.59 +0.5 758,901 + AO353_03540 0.59 -0.5 758,901 + AO353_03540 0.59 +0.1 758,901 + AO353_03540 0.59 +0.1 758,901 + AO353_03540 0.59 +1.3 758,901 + AO353_03540 0.59 +0.8 758,901 + AO353_03540 0.59 +1.2 758,901 + AO353_03540 0.59 -0.4 758,902 - AO353_03540 0.59 -0.0 758,902 - AO353_03540 0.59 +1.7 758,927 + AO353_03540 0.63 -2.0 758,927 + AO353_03540 0.63 -0.8 758,928 - AO353_03540 0.63 +0.4 758,965 + AO353_03540 0.69 +0.9 759,037 + AO353_03540 0.80 +1.0 759,037 + AO353_03540 0.80 -0.6 759,037 + AO353_03540 0.80 +0.5 759,038 - AO353_03540 0.80 -1.2 759,038 - AO353_03540 0.80 -2.1 759,038 - AO353_03540 0.80 +0.7 759,053 - AO353_03540 0.82 -0.1 759,090 + AO353_03540 0.88 +0.9 759,091 - AO353_03540 0.88 -0.7 759,091 - AO353_03540 0.88 +0.5 759,091 - AO353_03540 0.88 +2.7 759,091 - AO353_03540 0.88 +1.2 759,134 - -0.9 759,167 + +0.1 759,167 + -0.5 759,167 + +0.4 759,168 - +0.8 759,168 - -0.7 759,168 - +0.7 759,189 + -0.2 759,189 + +1.0 759,190 - -1.0 759,190 - -0.2 759,190 - +2.2 759,190 - -0.4 759,219 + +0.1 759,219 + -0.1 759,219 + +0.9 759,219 + -0.3 759,220 - +0.4 759,220 - +0.5 759,220 - -1.4 759,220 - +0.5 759,319 + -1.0 759,320 - -0.8 759,320 - -1.0 759,338 + -1.1 759,338 + -0.1 759,338 + +0.1 759,338 + -1.3 759,338 + -0.6 759,338 + -0.5 759,338 + -0.1 759,338 + +2.3 759,338 + -0.8 759,338 + -0.2 759,339 - +0.1 759,339 - -0.4 759,339 - -1.5 759,339 - -1.0 759,339 - -0.2 759,339 - -0.3 759,339 - -0.1 759,339 - +0.1 759,339 - -1.4 759,339 - +1.3 759,339 - +0.6 759,339 - -2.5 759,339 - +0.3 759,339 - +0.8 759,339 - +1.5 759,339 - -1.8 759,339 - -0.2 759,381 + -0.5 759,432 + AO353_03545 0.11 +0.1 759,451 + AO353_03545 0.14 +0.9 759,451 + AO353_03545 0.14 -1.2 759,452 - AO353_03545 0.14 +0.9 759,452 - AO353_03545 0.14 -1.4 759,467 + AO353_03545 0.16 -0.5 759,467 + AO353_03545 0.16 +0.7 759,468 - AO353_03545 0.16 -0.2 759,468 - AO353_03545 0.16 -1.8 759,468 - AO353_03545 0.16 -0.6 759,500 + AO353_03545 0.20 +0.1 759,501 - AO353_03545 0.20 -1.9 759,578 + AO353_03545 0.29 -1.1 759,579 - AO353_03545 0.29 -0.4 759,612 - AO353_03545 0.33 +0.1 759,689 + AO353_03545 0.42 +2.1 759,689 + AO353_03545 0.42 -2.3 759,689 + AO353_03545 0.42 +1.1 759,690 - AO353_03545 0.42 -1.8 759,690 - AO353_03545 0.42 -0.5 759,690 - AO353_03545 0.42 +0.1 759,690 - AO353_03545 0.42 +0.5 759,692 + AO353_03545 0.43 +0.9 759,692 + AO353_03545 0.43 +0.3 759,692 + AO353_03545 0.43 +0.9 759,693 - AO353_03545 0.43 +1.2 759,693 - AO353_03545 0.43 -0.8 759,693 - AO353_03545 0.43 -0.6 759,693 - AO353_03545 0.43 +0.8 759,783 + AO353_03545 0.53 -1.5 759,846 + AO353_03545 0.61 -0.6 759,898 + AO353_03545 0.67 -0.6 759,899 - AO353_03545 0.67 -1.4 759,899 - AO353_03545 0.67 -2.0 759,899 - AO353_03545 0.67 -0.9 759,899 - AO353_03545 0.67 -0.3 759,899 - AO353_03545 0.67 -1.4 759,899 - AO353_03545 0.67 +0.7 760,019 + AO353_03545 0.82 -1.2 760,032 + AO353_03545 0.83 -0.3 760,032 + AO353_03545 0.83 +0.1 760,038 - AO353_03545 0.84 -0.3 760,071 + AO353_03545 0.88 -0.9 760,071 + AO353_03545 0.88 -0.9 760,071 + AO353_03545 0.88 -1.3 760,071 + AO353_03545 0.88 -1.4 760,071 + AO353_03545 0.88 -1.6 760,071 + AO353_03545 0.88 -0.5 760,072 - AO353_03545 0.88 -3.3 760,072 - AO353_03545 0.88 -2.2 760,072 - AO353_03545 0.88 -0.5 760,072 - AO353_03545 0.88 -0.5 760,072 - AO353_03545 0.88 -1.0 760,072 - AO353_03545 0.88 -1.2 760,072 - AO353_03545 0.88 +0.1 760,147 + -1.3 760,147 + -0.3 760,147 + -1.7 760,148 - +0.1 760,148 - -1.4 760,178 + -1.1 760,178 + -2.0 760,178 + -0.3 760,178 + -2.0 760,178 + -1.8 760,179 - -1.9 760,179 - -1.7 760,179 - -0.1 760,179 - +0.2 760,182 + -1.7 760,183 - -1.2 760,183 - -1.6 760,183 - +0.7 760,183 - -0.6 760,183 - +0.9 760,687 - -1.2 760,687 - -0.8 760,705 - -2.6 760,705 - -0.8 760,705 - -1.1 760,705 - -0.8 760,705 - -1.3 760,709 - +1.3 760,709 - -0.5 760,738 - +0.1
Or see this region's nucleotide sequence