Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03415

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_03405 and AO353_03410 overlap by 11 nucleotidesAO353_03410 and AO353_03415 are separated by 206 nucleotidesAO353_03415 and AO353_03420 overlap by 4 nucleotides AO353_03405: AO353_03405 - histidine kinase, at 725,463 to 726,926 _03405 AO353_03410: AO353_03410 - chemotaxis protein CheY, at 726,916 to 727,647 _03410 AO353_03415: AO353_03415 - glucokinase, at 727,854 to 728,804 _03415 AO353_03420: AO353_03420 - phosphogluconate dehydratase, at 728,801 to 730,627 _03420 Position (kb) 727 728 729Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 726.937 kb on + strandat 726.937 kb on + strandat 726.938 kb on - strandat 726.938 kb on - strandat 726.938 kb on - strandat 727.280 kb on - strand, within AO353_03410at 727.280 kb on - strand, within AO353_03410at 727.334 kb on + strand, within AO353_03410at 727.335 kb on - strand, within AO353_03410at 727.577 kb on + strandat 727.577 kb on + strandat 727.578 kb on - strandat 727.578 kb on - strandat 727.578 kb on - strandat 727.578 kb on - strandat 727.578 kb on - strandat 727.578 kb on - strandat 727.597 kb on + strandat 727.597 kb on + strandat 727.667 kb on + strandat 727.667 kb on + strandat 727.667 kb on + strandat 727.667 kb on + strandat 727.667 kb on + strandat 727.683 kb on + strandat 727.683 kb on + strandat 727.684 kb on - strandat 727.684 kb on - strandat 727.852 kb on + strandat 727.852 kb on + strandat 727.852 kb on + strandat 727.852 kb on + strandat 727.897 kb on + strandat 727.898 kb on - strandat 727.936 kb on + strandat 727.936 kb on + strandat 727.936 kb on + strandat 727.937 kb on - strandat 727.937 kb on - strandat 727.937 kb on - strandat 727.937 kb on - strandat 727.937 kb on - strandat 727.937 kb on - strandat 727.937 kb on - strandat 728.029 kb on + strandat 728.029 kb on + strand, within AO353_03415at 728.029 kb on + strand, within AO353_03415at 728.029 kb on + strand, within AO353_03415at 728.029 kb on + strand, within AO353_03415at 728.029 kb on + strand, within AO353_03415at 728.029 kb on + strand, within AO353_03415at 728.029 kb on + strand, within AO353_03415at 728.030 kb on - strand, within AO353_03415at 728.030 kb on - strand, within AO353_03415at 728.030 kb on - strand, within AO353_03415at 728.030 kb on - strand, within AO353_03415at 728.030 kb on - strand, within AO353_03415at 728.030 kb on - strand, within AO353_03415at 728.030 kb on - strand, within AO353_03415at 728.207 kb on - strand, within AO353_03415at 728.269 kb on + strand, within AO353_03415at 728.269 kb on + strand, within AO353_03415at 728.270 kb on - strand, within AO353_03415at 728.270 kb on - strand, within AO353_03415at 728.270 kb on - strand, within AO353_03415at 728.270 kb on - strand, within AO353_03415at 728.582 kb on + strand, within AO353_03415at 728.582 kb on + strand, within AO353_03415at 728.671 kb on + strand, within AO353_03415at 728.671 kb on + strand, within AO353_03415at 728.672 kb on - strand, within AO353_03415at 728.701 kb on + strandat 728.701 kb on + strand, within AO353_03415at 728.701 kb on + strand, within AO353_03415at 728.701 kb on + strand, within AO353_03415at 728.796 kb on + strandat 728.797 kb on - strandat 728.797 kb on - strandat 728.797 kb on - strandat 728.797 kb on - strandat 728.797 kb on - strandat 728.806 kb on + strandat 728.806 kb on + strandat 728.806 kb on + strandat 728.806 kb on + strandat 728.807 kb on - strandat 728.807 kb on - strandat 728.807 kb on - strandat 728.827 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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726,937 + -0.5
726,937 + +0.3
726,938 - +1.7
726,938 - -0.3
726,938 - -0.8
727,280 - AO353_03410 0.50 +0.5
727,280 - AO353_03410 0.50 +0.3
727,334 + AO353_03410 0.57 -1.3
727,335 - AO353_03410 0.57 -0.1
727,577 + +0.2
727,577 + +0.1
727,578 - -0.8
727,578 - +1.4
727,578 - -0.2
727,578 - -0.9
727,578 - +0.1
727,578 - -0.1
727,597 + +0.1
727,597 + -0.6
727,667 + +0.7
727,667 + -2.3
727,667 + +0.6
727,667 + -0.0
727,667 + +2.7
727,683 + +0.2
727,683 + -0.7
727,684 - -1.2
727,684 - -1.0
727,852 + -0.5
727,852 + -0.8
727,852 + -0.6
727,852 + +0.0
727,897 + -0.1
727,898 - -0.3
727,936 + +0.2
727,936 + +0.9
727,936 + -2.4
727,937 - -1.3
727,937 - -1.1
727,937 - -0.3
727,937 - -2.5
727,937 - -0.5
727,937 - -1.7
727,937 - +0.2
728,029 + +0.3
728,029 + AO353_03415 0.18 -1.7
728,029 + AO353_03415 0.18 -1.1
728,029 + AO353_03415 0.18 -0.4
728,029 + AO353_03415 0.18 -0.8
728,029 + AO353_03415 0.18 +0.7
728,029 + AO353_03415 0.18 +0.8
728,029 + AO353_03415 0.18 -0.8
728,030 - AO353_03415 0.19 -1.9
728,030 - AO353_03415 0.19 -1.2
728,030 - AO353_03415 0.19 -0.2
728,030 - AO353_03415 0.19 -0.6
728,030 - AO353_03415 0.19 -2.3
728,030 - AO353_03415 0.19 +0.3
728,030 - AO353_03415 0.19 -1.2
728,207 - AO353_03415 0.37 -1.3
728,269 + AO353_03415 0.44 +0.3
728,269 + AO353_03415 0.44 -0.0
728,270 - AO353_03415 0.44 +0.5
728,270 - AO353_03415 0.44 -1.0
728,270 - AO353_03415 0.44 -0.1
728,270 - AO353_03415 0.44 -0.7
728,582 + AO353_03415 0.77 +0.3
728,582 + AO353_03415 0.77 +0.7
728,671 + AO353_03415 0.86 -2.1
728,671 + AO353_03415 0.86 -1.4
728,672 - AO353_03415 0.86 +0.3
728,701 + +1.1
728,701 + AO353_03415 0.89 -0.9
728,701 + AO353_03415 0.89 -2.0
728,701 + AO353_03415 0.89 +0.4
728,796 + +0.1
728,797 - +0.8
728,797 - +0.1
728,797 - -2.1
728,797 - -2.9
728,797 - -2.9
728,806 + +0.1
728,806 + -0.4
728,806 + -0.5
728,806 + -0.1
728,807 - -1.3
728,807 - +0.3
728,807 - -0.1
728,827 + -0.7

Or see this region's nucleotide sequence