Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01035

Experiment: Gly-DL-Asp (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_01030 and AO353_01035 are separated by 66 nucleotidesAO353_01035 and AO353_01040 are separated by 265 nucleotidesAO353_01040 and AO353_01045 are separated by 35 nucleotides AO353_01030: AO353_01030 - chemotaxis protein, at 226,295 to 227,860 _01030 AO353_01035: AO353_01035 - hypothetical protein, at 227,927 to 228,136 _01035 AO353_01040: AO353_01040 - polyhydroxyalkanoate synthesis regulator, at 228,402 to 228,935 _01040 AO353_01045: AO353_01045 - phasin, at 228,971 to 229,534 _01045 Position (kb) 227 228 229Strain fitness (log2 ratio) -2 -1 0 1 2 3at 227.063 kb on - strand, within AO353_01030at 227.208 kb on + strand, within AO353_01030at 227.208 kb on + strand, within AO353_01030at 227.208 kb on + strand, within AO353_01030at 227.208 kb on + strand, within AO353_01030at 227.208 kb on + strand, within AO353_01030at 227.208 kb on + strand, within AO353_01030at 227.208 kb on + strand, within AO353_01030at 227.208 kb on + strand, within AO353_01030at 227.208 kb on + strand, within AO353_01030at 227.208 kb on + strand, within AO353_01030at 227.208 kb on + strand, within AO353_01030at 227.208 kb on + strand, within AO353_01030at 227.208 kb on + strand, within AO353_01030at 227.208 kb on + strand, within AO353_01030at 227.208 kb on + strand, within AO353_01030at 227.209 kb on - strand, within AO353_01030at 227.209 kb on - strand, within AO353_01030at 227.209 kb on - strand, within AO353_01030at 227.209 kb on - strand, within AO353_01030at 227.209 kb on - strand, within AO353_01030at 227.209 kb on - strand, within AO353_01030at 227.209 kb on - strand, within AO353_01030at 227.395 kb on - strand, within AO353_01030at 227.472 kb on + strand, within AO353_01030at 227.472 kb on + strand, within AO353_01030at 227.473 kb on - strand, within AO353_01030at 227.473 kb on - strand, within AO353_01030at 227.507 kb on - strand, within AO353_01030at 227.507 kb on - strand, within AO353_01030at 227.568 kb on + strand, within AO353_01030at 227.568 kb on + strand, within AO353_01030at 227.568 kb on + strand, within AO353_01030at 227.568 kb on + strand, within AO353_01030at 227.568 kb on + strand, within AO353_01030at 227.569 kb on - strand, within AO353_01030at 227.569 kb on - strand, within AO353_01030at 227.569 kb on - strand, within AO353_01030at 227.569 kb on - strand, within AO353_01030at 227.569 kb on - strand, within AO353_01030at 227.583 kb on + strand, within AO353_01030at 227.656 kb on + strand, within AO353_01030at 227.656 kb on + strand, within AO353_01030at 227.656 kb on + strand, within AO353_01030at 227.657 kb on - strand, within AO353_01030at 227.657 kb on - strand, within AO353_01030at 227.657 kb on - strandat 227.657 kb on - strand, within AO353_01030at 227.657 kb on - strand, within AO353_01030at 227.657 kb on - strand, within AO353_01030at 227.657 kb on - strand, within AO353_01030at 227.657 kb on - strand, within AO353_01030at 227.657 kb on - strand, within AO353_01030at 227.657 kb on - strand, within AO353_01030at 227.766 kb on + strandat 227.766 kb on + strandat 227.767 kb on - strandat 227.767 kb on - strandat 227.767 kb on - strandat 227.767 kb on - strandat 227.767 kb on - strandat 227.767 kb on - strandat 227.865 kb on - strandat 227.883 kb on + strandat 227.884 kb on - strandat 227.884 kb on - strandat 227.884 kb on - strandat 227.884 kb on - strandat 227.886 kb on + strandat 227.886 kb on + strandat 227.887 kb on - strandat 227.887 kb on - strandat 227.887 kb on - strandat 227.887 kb on - strandat 228.026 kb on + strand, within AO353_01035at 228.027 kb on - strand, within AO353_01035at 228.027 kb on - strand, within AO353_01035at 228.027 kb on - strand, within AO353_01035at 228.083 kb on + strand, within AO353_01035at 228.083 kb on + strand, within AO353_01035at 228.083 kb on + strand, within AO353_01035at 228.122 kb on - strandat 228.297 kb on + strandat 228.297 kb on + strandat 228.298 kb on - strandat 228.298 kb on - strandat 228.298 kb on - strandat 228.357 kb on + strandat 228.358 kb on - strandat 228.358 kb on - strandat 228.358 kb on - strandat 228.362 kb on + strandat 228.363 kb on - strandat 228.363 kb on - strandat 228.363 kb on - strandat 228.373 kb on + strandat 228.373 kb on + strandat 228.374 kb on - strandat 228.374 kb on - strandat 228.393 kb on + strandat 228.393 kb on + strandat 228.410 kb on + strandat 228.410 kb on + strandat 228.410 kb on + strandat 228.410 kb on + strandat 228.410 kb on + strandat 228.410 kb on + strandat 228.410 kb on + strandat 228.411 kb on - strandat 228.411 kb on - strandat 228.411 kb on - strandat 228.411 kb on - strandat 228.411 kb on - strandat 228.411 kb on - strandat 228.411 kb on - strandat 228.460 kb on + strand, within AO353_01040at 228.460 kb on + strand, within AO353_01040at 228.460 kb on + strand, within AO353_01040at 228.460 kb on + strand, within AO353_01040at 228.460 kb on + strandat 228.460 kb on + strand, within AO353_01040at 228.460 kb on + strand, within AO353_01040at 228.460 kb on + strand, within AO353_01040at 228.461 kb on - strand, within AO353_01040at 228.461 kb on - strand, within AO353_01040at 228.461 kb on - strand, within AO353_01040at 228.461 kb on - strand, within AO353_01040at 228.461 kb on - strand, within AO353_01040at 228.461 kb on - strand, within AO353_01040at 228.461 kb on - strand, within AO353_01040at 228.461 kb on - strand, within AO353_01040at 228.461 kb on - strand, within AO353_01040at 228.462 kb on + strand, within AO353_01040at 228.462 kb on + strand, within AO353_01040at 228.462 kb on + strand, within AO353_01040at 228.462 kb on + strand, within AO353_01040at 228.463 kb on - strand, within AO353_01040at 228.463 kb on - strand, within AO353_01040at 228.463 kb on - strand, within AO353_01040at 228.463 kb on - strand, within AO353_01040at 228.463 kb on - strand, within AO353_01040at 228.463 kb on - strand, within AO353_01040at 228.463 kb on - strand, within AO353_01040at 228.463 kb on - strand, within AO353_01040at 228.463 kb on - strand, within AO353_01040at 228.502 kb on + strand, within AO353_01040at 228.502 kb on + strand, within AO353_01040at 228.503 kb on - strand, within AO353_01040at 228.503 kb on - strand, within AO353_01040at 228.503 kb on - strand, within AO353_01040at 228.503 kb on - strand, within AO353_01040at 228.522 kb on - strand, within AO353_01040at 228.522 kb on - strand, within AO353_01040at 228.575 kb on + strandat 228.575 kb on + strand, within AO353_01040at 228.575 kb on + strand, within AO353_01040at 228.576 kb on - strand, within AO353_01040at 228.660 kb on + strand, within AO353_01040at 228.660 kb on + strand, within AO353_01040at 228.660 kb on + strand, within AO353_01040at 228.660 kb on + strand, within AO353_01040at 228.661 kb on - strand, within AO353_01040at 228.661 kb on - strand, within AO353_01040at 228.690 kb on + strand, within AO353_01040at 228.690 kb on + strand, within AO353_01040at 228.690 kb on + strand, within AO353_01040at 228.690 kb on + strand, within AO353_01040at 228.690 kb on + strand, within AO353_01040at 228.690 kb on + strand, within AO353_01040at 228.691 kb on - strand, within AO353_01040at 228.691 kb on - strand, within AO353_01040at 228.691 kb on - strand, within AO353_01040at 228.691 kb on - strand, within AO353_01040at 228.691 kb on - strand, within AO353_01040at 228.698 kb on + strand, within AO353_01040at 228.699 kb on - strand, within AO353_01040at 228.813 kb on + strand, within AO353_01040at 228.813 kb on + strand, within AO353_01040at 228.813 kb on + strand, within AO353_01040at 228.814 kb on - strand, within AO353_01040at 228.814 kb on - strand, within AO353_01040at 228.837 kb on + strand, within AO353_01040at 228.837 kb on + strand, within AO353_01040at 228.837 kb on + strand, within AO353_01040at 228.838 kb on - strand, within AO353_01040at 228.933 kb on + strandat 228.934 kb on - strandat 228.962 kb on + strandat 228.962 kb on + strandat 228.963 kb on - strandat 228.972 kb on + strandat 228.972 kb on + strandat 228.972 kb on + strandat 228.972 kb on + strandat 228.972 kb on + strandat 228.972 kb on + strandat 228.972 kb on + strandat 228.972 kb on + strandat 228.972 kb on + strandat 228.972 kb on + strandat 228.972 kb on + strandat 228.973 kb on - strandat 228.973 kb on - strandat 228.973 kb on - strandat 228.973 kb on - strandat 228.973 kb on - strandat 228.973 kb on - strandat 228.973 kb on - strandat 228.973 kb on - strandat 228.973 kb on - strandat 229.070 kb on + strand, within AO353_01045

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
remove
227,063 - AO353_01030 0.49 +1.1
227,208 + AO353_01030 0.58 -0.6
227,208 + AO353_01030 0.58 +0.3
227,208 + AO353_01030 0.58 +1.0
227,208 + AO353_01030 0.58 -0.0
227,208 + AO353_01030 0.58 +0.2
227,208 + AO353_01030 0.58 +3.1
227,208 + AO353_01030 0.58 +0.9
227,208 + AO353_01030 0.58 -0.5
227,208 + AO353_01030 0.58 -1.2
227,208 + AO353_01030 0.58 -1.1
227,208 + AO353_01030 0.58 -0.2
227,208 + AO353_01030 0.58 +0.2
227,208 + AO353_01030 0.58 +0.9
227,208 + AO353_01030 0.58 +0.3
227,208 + AO353_01030 0.58 +0.4
227,209 - AO353_01030 0.58 -1.8
227,209 - AO353_01030 0.58 -0.3
227,209 - AO353_01030 0.58 -0.3
227,209 - AO353_01030 0.58 +0.8
227,209 - AO353_01030 0.58 +0.1
227,209 - AO353_01030 0.58 -1.0
227,209 - AO353_01030 0.58 -0.3
227,395 - AO353_01030 0.70 -2.0
227,472 + AO353_01030 0.75 -1.6
227,472 + AO353_01030 0.75 -0.1
227,473 - AO353_01030 0.75 -2.4
227,473 - AO353_01030 0.75 -1.7
227,507 - AO353_01030 0.77 +0.9
227,507 - AO353_01030 0.77 -0.5
227,568 + AO353_01030 0.81 -0.7
227,568 + AO353_01030 0.81 -1.0
227,568 + AO353_01030 0.81 -0.2
227,568 + AO353_01030 0.81 -1.3
227,568 + AO353_01030 0.81 +1.6
227,569 - AO353_01030 0.81 -2.5
227,569 - AO353_01030 0.81 +0.1
227,569 - AO353_01030 0.81 -0.0
227,569 - AO353_01030 0.81 +1.2
227,569 - AO353_01030 0.81 +0.3
227,583 + AO353_01030 0.82 -1.0
227,656 + AO353_01030 0.87 +2.0
227,656 + AO353_01030 0.87 +1.6
227,656 + AO353_01030 0.87 -0.4
227,657 - AO353_01030 0.87 -1.3
227,657 - AO353_01030 0.87 -0.1
227,657 - +0.5
227,657 - AO353_01030 0.87 -0.1
227,657 - AO353_01030 0.87 +0.5
227,657 - AO353_01030 0.87 -1.3
227,657 - AO353_01030 0.87 -0.3
227,657 - AO353_01030 0.87 -1.3
227,657 - AO353_01030 0.87 -2.3
227,657 - AO353_01030 0.87 +1.1
227,766 + -0.3
227,766 + +0.4
227,767 - -0.6
227,767 - -0.7
227,767 - +0.4
227,767 - +0.2
227,767 - +0.2
227,767 - +0.8
227,865 - +0.5
227,883 + -0.7
227,884 - -1.3
227,884 - -0.8
227,884 - -0.9
227,884 - +0.2
227,886 + +0.2
227,886 + -0.7
227,887 - -2.2
227,887 - -0.3
227,887 - -0.9
227,887 - -2.0
228,026 + AO353_01035 0.47 -1.0
228,027 - AO353_01035 0.48 +0.0
228,027 - AO353_01035 0.48 -0.2
228,027 - AO353_01035 0.48 -1.2
228,083 + AO353_01035 0.74 -1.1
228,083 + AO353_01035 0.74 -0.9
228,083 + AO353_01035 0.74 -1.0
228,122 - -1.0
228,297 + +0.1
228,297 + -0.5
228,298 - +0.3
228,298 - -1.1
228,298 - +1.8
228,357 + +0.9
228,358 - +0.9
228,358 - -0.1
228,358 - -1.4
228,362 + -0.2
228,363 - +1.0
228,363 - +2.9
228,363 - -0.1
228,373 + +0.7
228,373 + -0.0
228,374 - +0.9
228,374 - -0.9
228,393 + -0.6
228,393 + -0.1
228,410 + -0.0
228,410 + +0.3
228,410 + +1.2
228,410 + -0.4
228,410 + -1.4
228,410 + -1.4
228,410 + +0.3
228,411 - +1.1
228,411 - +0.0
228,411 - -0.9
228,411 - -0.3
228,411 - +0.9
228,411 - -0.8
228,411 - -0.2
228,460 + AO353_01040 0.11 -0.4
228,460 + AO353_01040 0.11 +0.7
228,460 + AO353_01040 0.11 -1.0
228,460 + AO353_01040 0.11 -0.6
228,460 + +0.5
228,460 + AO353_01040 0.11 -0.7
228,460 + AO353_01040 0.11 -0.7
228,460 + AO353_01040 0.11 +0.4
228,461 - AO353_01040 0.11 -0.6
228,461 - AO353_01040 0.11 +0.6
228,461 - AO353_01040 0.11 +1.5
228,461 - AO353_01040 0.11 -0.2
228,461 - AO353_01040 0.11 +1.3
228,461 - AO353_01040 0.11 +1.3
228,461 - AO353_01040 0.11 -0.0
228,461 - AO353_01040 0.11 +0.8
228,461 - AO353_01040 0.11 -0.2
228,462 + AO353_01040 0.11 +0.0
228,462 + AO353_01040 0.11 -0.1
228,462 + AO353_01040 0.11 -1.4
228,462 + AO353_01040 0.11 -0.3
228,463 - AO353_01040 0.11 -2.3
228,463 - AO353_01040 0.11 -1.0
228,463 - AO353_01040 0.11 -0.3
228,463 - AO353_01040 0.11 -1.1
228,463 - AO353_01040 0.11 -0.6
228,463 - AO353_01040 0.11 +0.0
228,463 - AO353_01040 0.11 -0.5
228,463 - AO353_01040 0.11 +0.5
228,463 - AO353_01040 0.11 +0.6
228,502 + AO353_01040 0.19 +0.9
228,502 + AO353_01040 0.19 -0.8
228,503 - AO353_01040 0.19 -1.4
228,503 - AO353_01040 0.19 +0.6
228,503 - AO353_01040 0.19 +0.2
228,503 - AO353_01040 0.19 -0.9
228,522 - AO353_01040 0.22 -0.6
228,522 - AO353_01040 0.22 +2.0
228,575 + -0.1
228,575 + AO353_01040 0.32 +0.3
228,575 + AO353_01040 0.32 -0.7
228,576 - AO353_01040 0.33 +0.2
228,660 + AO353_01040 0.48 +0.2
228,660 + AO353_01040 0.48 -0.2
228,660 + AO353_01040 0.48 -1.1
228,660 + AO353_01040 0.48 -0.5
228,661 - AO353_01040 0.49 -0.8
228,661 - AO353_01040 0.49 -1.4
228,690 + AO353_01040 0.54 +0.8
228,690 + AO353_01040 0.54 -2.0
228,690 + AO353_01040 0.54 -1.5
228,690 + AO353_01040 0.54 -0.3
228,690 + AO353_01040 0.54 -0.5
228,690 + AO353_01040 0.54 +1.3
228,691 - AO353_01040 0.54 -1.8
228,691 - AO353_01040 0.54 +1.5
228,691 - AO353_01040 0.54 +0.9
228,691 - AO353_01040 0.54 -0.2
228,691 - AO353_01040 0.54 -1.4
228,698 + AO353_01040 0.55 -0.4
228,699 - AO353_01040 0.56 -1.4
228,813 + AO353_01040 0.77 +0.9
228,813 + AO353_01040 0.77 -1.2
228,813 + AO353_01040 0.77 +1.0
228,814 - AO353_01040 0.77 -1.4
228,814 - AO353_01040 0.77 -1.1
228,837 + AO353_01040 0.81 -2.1
228,837 + AO353_01040 0.81 +0.1
228,837 + AO353_01040 0.81 -0.9
228,838 - AO353_01040 0.82 -0.5
228,933 + +1.1
228,934 - -2.0
228,962 + -0.7
228,962 + +0.5
228,963 - -0.5
228,972 + +0.0
228,972 + +1.9
228,972 + -0.1
228,972 + +0.5
228,972 + -1.3
228,972 + -0.5
228,972 + -0.1
228,972 + -0.9
228,972 + -1.3
228,972 + +0.7
228,972 + -1.1
228,973 - +1.1
228,973 - -0.1
228,973 - +0.1
228,973 - -0.4
228,973 - -0.7
228,973 - +0.3
228,973 - -1.2
228,973 - -0.4
228,973 - -2.1
229,070 + AO353_01045 0.18 -0.9

Or see this region's nucleotide sequence