Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00750

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00745 and AO353_00750 are separated by 168 nucleotidesAO353_00750 and AO353_00755 are separated by 376 nucleotides AO353_00745: AO353_00745 - guanine deaminase, at 163,714 to 165,018 _00745 AO353_00750: AO353_00750 - GntR family transcriptional regulator, at 165,187 to 165,951 _00750 AO353_00755: AO353_00755 - hypothetical protein, at 166,328 to 167,521 _00755 Position (kb) 165 166Strain fitness (log2 ratio) -2 -1 0 1 2 3at 164.230 kb on + strand, within AO353_00745at 164.231 kb on - strand, within AO353_00745at 164.231 kb on - strand, within AO353_00745at 164.257 kb on + strand, within AO353_00745at 164.257 kb on + strand, within AO353_00745at 164.257 kb on + strand, within AO353_00745at 164.257 kb on + strand, within AO353_00745at 164.257 kb on + strand, within AO353_00745at 164.258 kb on - strand, within AO353_00745at 164.258 kb on - strand, within AO353_00745at 164.312 kb on - strand, within AO353_00745at 164.312 kb on - strand, within AO353_00745at 164.398 kb on + strandat 164.398 kb on + strand, within AO353_00745at 164.398 kb on + strand, within AO353_00745at 164.398 kb on + strand, within AO353_00745at 164.398 kb on + strand, within AO353_00745at 164.398 kb on + strand, within AO353_00745at 164.398 kb on + strand, within AO353_00745at 164.398 kb on + strand, within AO353_00745at 164.399 kb on - strand, within AO353_00745at 164.399 kb on - strand, within AO353_00745at 164.399 kb on - strand, within AO353_00745at 164.399 kb on - strand, within AO353_00745at 164.399 kb on - strand, within AO353_00745at 164.399 kb on - strand, within AO353_00745at 164.485 kb on + strand, within AO353_00745at 164.486 kb on - strand, within AO353_00745at 164.486 kb on - strandat 164.494 kb on + strand, within AO353_00745at 164.494 kb on + strand, within AO353_00745at 164.495 kb on - strand, within AO353_00745at 164.731 kb on + strand, within AO353_00745at 164.731 kb on + strand, within AO353_00745at 164.732 kb on - strand, within AO353_00745at 164.732 kb on - strand, within AO353_00745at 164.732 kb on - strand, within AO353_00745at 164.732 kb on - strand, within AO353_00745at 164.782 kb on + strand, within AO353_00745at 164.783 kb on - strand, within AO353_00745at 164.878 kb on + strand, within AO353_00745at 164.878 kb on + strand, within AO353_00745at 164.878 kb on + strand, within AO353_00745at 164.878 kb on + strand, within AO353_00745at 164.878 kb on + strand, within AO353_00745at 164.878 kb on + strand, within AO353_00745at 164.878 kb on + strand, within AO353_00745at 164.879 kb on - strand, within AO353_00745at 164.879 kb on - strand, within AO353_00745at 164.879 kb on - strand, within AO353_00745at 164.879 kb on - strand, within AO353_00745at 164.879 kb on - strand, within AO353_00745at 164.879 kb on - strand, within AO353_00745at 164.879 kb on - strand, within AO353_00745at 164.986 kb on + strandat 164.987 kb on - strandat 164.987 kb on - strandat 165.002 kb on + strandat 165.002 kb on + strandat 165.002 kb on + strandat 165.002 kb on + strandat 165.002 kb on + strandat 165.002 kb on + strandat 165.002 kb on + strandat 165.003 kb on - strandat 165.003 kb on - strandat 165.003 kb on - strandat 165.003 kb on - strandat 165.016 kb on + strandat 165.072 kb on + strandat 165.111 kb on + strandat 165.111 kb on + strandat 165.111 kb on + strandat 165.112 kb on - strandat 165.142 kb on - strandat 165.142 kb on - strandat 165.185 kb on + strandat 165.186 kb on - strandat 165.186 kb on - strandat 165.186 kb on - strandat 165.384 kb on - strand, within AO353_00750at 165.384 kb on - strand, within AO353_00750at 165.413 kb on + strand, within AO353_00750at 165.613 kb on + strand, within AO353_00750at 165.664 kb on + strand, within AO353_00750at 165.665 kb on - strand, within AO353_00750at 165.861 kb on + strand, within AO353_00750at 165.861 kb on + strand, within AO353_00750at 165.862 kb on - strand, within AO353_00750at 165.862 kb on - strand, within AO353_00750at 165.869 kb on + strand, within AO353_00750at 165.870 kb on - strand, within AO353_00750at 165.870 kb on - strand, within AO353_00750at 165.995 kb on + strandat 165.996 kb on - strandat 165.996 kb on - strandat 165.996 kb on - strandat 165.996 kb on - strandat 165.996 kb on - strandat 165.998 kb on + strandat 165.999 kb on - strandat 165.999 kb on - strandat 165.999 kb on - strandat 166.023 kb on + strandat 166.023 kb on + strandat 166.023 kb on + strandat 166.023 kb on + strandat 166.023 kb on + strandat 166.023 kb on + strandat 166.024 kb on - strandat 166.024 kb on - strandat 166.024 kb on - strandat 166.024 kb on - strandat 166.031 kb on - strandat 166.049 kb on + strandat 166.049 kb on + strandat 166.050 kb on - strandat 166.050 kb on - strandat 166.078 kb on - strandat 166.078 kb on - strandat 166.085 kb on + strandat 166.085 kb on + strandat 166.085 kb on + strandat 166.085 kb on + strandat 166.086 kb on - strandat 166.087 kb on + strandat 166.087 kb on + strandat 166.087 kb on + strandat 166.087 kb on + strandat 166.087 kb on + strandat 166.087 kb on + strandat 166.088 kb on - strandat 166.088 kb on - strandat 166.088 kb on - strandat 166.088 kb on - strandat 166.088 kb on - strandat 166.088 kb on - strandat 166.088 kb on - strandat 166.088 kb on - strandat 166.088 kb on - strandat 166.088 kb on - strandat 166.101 kb on + strandat 166.101 kb on + strandat 166.101 kb on + strandat 166.102 kb on - strandat 166.123 kb on + strandat 166.124 kb on - strandat 166.129 kb on + strandat 166.129 kb on + strandat 166.209 kb on + strandat 166.226 kb on + strandat 166.235 kb on - strandat 166.295 kb on + strandat 166.295 kb on + strandat 166.295 kb on + strandat 166.296 kb on - strandat 166.296 kb on - strandat 166.296 kb on - strandat 166.296 kb on - strandat 166.301 kb on + strandat 166.301 kb on + strandat 166.301 kb on + strandat 166.301 kb on + strandat 166.301 kb on + strandat 166.301 kb on + strandat 166.302 kb on - strandat 166.302 kb on - strandat 166.302 kb on - strandat 166.302 kb on - strandat 166.302 kb on - strandat 166.302 kb on - strandat 166.302 kb on - strandat 166.302 kb on - strandat 166.302 kb on - strandat 166.303 kb on + strandat 166.399 kb on + strandat 166.399 kb on + strandat 166.400 kb on - strandat 166.622 kb on + strand, within AO353_00755at 166.643 kb on + strand, within AO353_00755at 166.643 kb on + strand, within AO353_00755at 166.644 kb on - strand, within AO353_00755at 166.644 kb on - strand, within AO353_00755at 166.826 kb on + strand, within AO353_00755at 166.827 kb on - strand, within AO353_00755at 166.827 kb on - strand, within AO353_00755at 166.827 kb on - strand, within AO353_00755at 166.827 kb on - strand, within AO353_00755at 166.827 kb on - strand, within AO353_00755

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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164,230 + AO353_00745 0.40 +1.0
164,231 - AO353_00745 0.40 -0.4
164,231 - AO353_00745 0.40 -0.8
164,257 + AO353_00745 0.42 -0.3
164,257 + AO353_00745 0.42 +1.8
164,257 + AO353_00745 0.42 +0.4
164,257 + AO353_00745 0.42 -0.7
164,257 + AO353_00745 0.42 +0.9
164,258 - AO353_00745 0.42 +0.0
164,258 - AO353_00745 0.42 -0.5
164,312 - AO353_00745 0.46 -0.8
164,312 - AO353_00745 0.46 -0.9
164,398 + +3.1
164,398 + AO353_00745 0.52 -0.7
164,398 + AO353_00745 0.52 -0.5
164,398 + AO353_00745 0.52 -1.6
164,398 + AO353_00745 0.52 +0.6
164,398 + AO353_00745 0.52 -0.5
164,398 + AO353_00745 0.52 -0.8
164,398 + AO353_00745 0.52 +0.8
164,399 - AO353_00745 0.52 -0.9
164,399 - AO353_00745 0.52 +0.2
164,399 - AO353_00745 0.52 +2.5
164,399 - AO353_00745 0.52 -0.3
164,399 - AO353_00745 0.52 -0.3
164,399 - AO353_00745 0.52 +0.5
164,485 + AO353_00745 0.59 -1.5
164,486 - AO353_00745 0.59 +2.3
164,486 - +0.1
164,494 + AO353_00745 0.60 -0.5
164,494 + AO353_00745 0.60 +0.6
164,495 - AO353_00745 0.60 -0.7
164,731 + AO353_00745 0.78 +0.2
164,731 + AO353_00745 0.78 -1.9
164,732 - AO353_00745 0.78 +1.3
164,732 - AO353_00745 0.78 +1.1
164,732 - AO353_00745 0.78 -0.5
164,732 - AO353_00745 0.78 +0.6
164,782 + AO353_00745 0.82 -0.6
164,783 - AO353_00745 0.82 -0.0
164,878 + AO353_00745 0.89 -1.0
164,878 + AO353_00745 0.89 +1.3
164,878 + AO353_00745 0.89 +0.7
164,878 + AO353_00745 0.89 -0.9
164,878 + AO353_00745 0.89 +0.3
164,878 + AO353_00745 0.89 -0.1
164,878 + AO353_00745 0.89 +0.3
164,879 - AO353_00745 0.89 -0.6
164,879 - AO353_00745 0.89 +0.5
164,879 - AO353_00745 0.89 -0.8
164,879 - AO353_00745 0.89 -0.8
164,879 - AO353_00745 0.89 +0.9
164,879 - AO353_00745 0.89 -0.3
164,879 - AO353_00745 0.89 -1.7
164,986 + -2.7
164,987 - -0.1
164,987 - -0.7
165,002 + +0.5
165,002 + -0.5
165,002 + +0.6
165,002 + +0.6
165,002 + +0.3
165,002 + -0.2
165,002 + -1.2
165,003 - +0.0
165,003 - -0.9
165,003 - +2.1
165,003 - +1.1
165,016 + -0.6
165,072 + -0.4
165,111 + +0.1
165,111 + -0.1
165,111 + -0.6
165,112 - -0.4
165,142 - +0.7
165,142 - -2.4
165,185 + -1.7
165,186 - -1.5
165,186 - -1.1
165,186 - +0.1
165,384 - AO353_00750 0.26 -1.7
165,384 - AO353_00750 0.26 -0.0
165,413 + AO353_00750 0.30 -2.3
165,613 + AO353_00750 0.56 +0.1
165,664 + AO353_00750 0.62 -1.1
165,665 - AO353_00750 0.62 -0.7
165,861 + AO353_00750 0.88 -1.9
165,861 + AO353_00750 0.88 +0.1
165,862 - AO353_00750 0.88 -0.3
165,862 - AO353_00750 0.88 -1.8
165,869 + AO353_00750 0.89 -0.9
165,870 - AO353_00750 0.89 -1.1
165,870 - AO353_00750 0.89 -1.5
165,995 + -1.3
165,996 - +0.0
165,996 - -1.1
165,996 - -1.4
165,996 - +0.9
165,996 - +0.1
165,998 + -0.4
165,999 - -1.5
165,999 - +0.6
165,999 - -1.0
166,023 + -1.1
166,023 + -1.9
166,023 + +0.5
166,023 + +0.6
166,023 + +0.1
166,023 + -1.0
166,024 - -1.5
166,024 - -0.3
166,024 - -0.6
166,024 - +0.4
166,031 - -1.4
166,049 + -0.4
166,049 + -0.7
166,050 - +0.4
166,050 - +0.9
166,078 - -1.2
166,078 - +0.5
166,085 + -0.4
166,085 + +0.5
166,085 + +0.1
166,085 + -2.1
166,086 - -0.2
166,087 + +0.9
166,087 + -1.5
166,087 + -0.1
166,087 + +1.5
166,087 + +1.1
166,087 + -1.3
166,088 - -1.3
166,088 - -0.1
166,088 - +1.1
166,088 - -0.1
166,088 - -0.8
166,088 - +0.6
166,088 - +0.0
166,088 - +0.3
166,088 - -0.9
166,088 - -1.1
166,101 + -0.5
166,101 + +0.5
166,101 + -1.1
166,102 - -0.7
166,123 + +1.8
166,124 - -0.2
166,129 + +0.8
166,129 + -1.8
166,209 + +0.1
166,226 + -0.9
166,235 - -1.4
166,295 + +0.5
166,295 + +0.3
166,295 + -0.7
166,296 - +0.2
166,296 - +0.1
166,296 - -1.4
166,296 - +0.5
166,301 + -1.9
166,301 + -0.9
166,301 + -0.3
166,301 + +2.9
166,301 + -1.9
166,301 + -1.1
166,302 - -1.3
166,302 - +0.5
166,302 - +0.7
166,302 - +0.6
166,302 - +0.5
166,302 - -1.3
166,302 - -1.3
166,302 - -0.4
166,302 - +0.7
166,303 + -1.7
166,399 + -1.8
166,399 + +0.9
166,400 - +0.1
166,622 + AO353_00755 0.25 +0.6
166,643 + AO353_00755 0.26 -0.2
166,643 + AO353_00755 0.26 -1.9
166,644 - AO353_00755 0.26 +0.7
166,644 - AO353_00755 0.26 +0.5
166,826 + AO353_00755 0.42 +0.2
166,827 - AO353_00755 0.42 +0.5
166,827 - AO353_00755 0.42 +1.1
166,827 - AO353_00755 0.42 -0.8
166,827 - AO353_00755 0.42 +0.1
166,827 - AO353_00755 0.42 -0.9

Or see this region's nucleotide sequence