Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00745 and AO353_00750 are separated by 168 nucleotides AO353_00750 and AO353_00755 are separated by 376 nucleotides
AO353_00745: AO353_00745 - guanine deaminase, at 163,714 to 165,018
_00745
AO353_00750: AO353_00750 - GntR family transcriptional regulator, at 165,187 to 165,951
_00750
AO353_00755: AO353_00755 - hypothetical protein, at 166,328 to 167,521
_00755
Position (kb) 165
166 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 164.230 kb on + strand, within AO353_00745 at 164.231 kb on - strand, within AO353_00745 at 164.231 kb on - strand, within AO353_00745 at 164.257 kb on + strand, within AO353_00745 at 164.257 kb on + strand, within AO353_00745 at 164.257 kb on + strand, within AO353_00745 at 164.257 kb on + strand, within AO353_00745 at 164.257 kb on + strand, within AO353_00745 at 164.258 kb on - strand, within AO353_00745 at 164.258 kb on - strand, within AO353_00745 at 164.312 kb on - strand, within AO353_00745 at 164.312 kb on - strand, within AO353_00745 at 164.398 kb on + strand at 164.398 kb on + strand, within AO353_00745 at 164.398 kb on + strand, within AO353_00745 at 164.398 kb on + strand, within AO353_00745 at 164.398 kb on + strand, within AO353_00745 at 164.398 kb on + strand, within AO353_00745 at 164.398 kb on + strand, within AO353_00745 at 164.398 kb on + strand, within AO353_00745 at 164.399 kb on - strand, within AO353_00745 at 164.399 kb on - strand, within AO353_00745 at 164.399 kb on - strand, within AO353_00745 at 164.399 kb on - strand, within AO353_00745 at 164.399 kb on - strand, within AO353_00745 at 164.399 kb on - strand, within AO353_00745 at 164.485 kb on + strand, within AO353_00745 at 164.486 kb on - strand, within AO353_00745 at 164.486 kb on - strand at 164.494 kb on + strand, within AO353_00745 at 164.494 kb on + strand, within AO353_00745 at 164.495 kb on - strand, within AO353_00745 at 164.731 kb on + strand, within AO353_00745 at 164.731 kb on + strand, within AO353_00745 at 164.732 kb on - strand, within AO353_00745 at 164.732 kb on - strand, within AO353_00745 at 164.732 kb on - strand, within AO353_00745 at 164.732 kb on - strand, within AO353_00745 at 164.782 kb on + strand, within AO353_00745 at 164.783 kb on - strand, within AO353_00745 at 164.878 kb on + strand, within AO353_00745 at 164.878 kb on + strand, within AO353_00745 at 164.878 kb on + strand, within AO353_00745 at 164.878 kb on + strand, within AO353_00745 at 164.878 kb on + strand, within AO353_00745 at 164.878 kb on + strand, within AO353_00745 at 164.878 kb on + strand, within AO353_00745 at 164.879 kb on - strand, within AO353_00745 at 164.879 kb on - strand, within AO353_00745 at 164.879 kb on - strand, within AO353_00745 at 164.879 kb on - strand, within AO353_00745 at 164.879 kb on - strand, within AO353_00745 at 164.879 kb on - strand, within AO353_00745 at 164.879 kb on - strand, within AO353_00745 at 164.986 kb on + strand at 164.987 kb on - strand at 164.987 kb on - strand at 165.002 kb on + strand at 165.002 kb on + strand at 165.002 kb on + strand at 165.002 kb on + strand at 165.002 kb on + strand at 165.002 kb on + strand at 165.002 kb on + strand at 165.003 kb on - strand at 165.003 kb on - strand at 165.003 kb on - strand at 165.003 kb on - strand at 165.016 kb on + strand at 165.072 kb on + strand at 165.111 kb on + strand at 165.111 kb on + strand at 165.111 kb on + strand at 165.112 kb on - strand at 165.142 kb on - strand at 165.142 kb on - strand at 165.185 kb on + strand at 165.186 kb on - strand at 165.186 kb on - strand at 165.186 kb on - strand at 165.384 kb on - strand, within AO353_00750 at 165.384 kb on - strand, within AO353_00750 at 165.413 kb on + strand, within AO353_00750 at 165.613 kb on + strand, within AO353_00750 at 165.664 kb on + strand, within AO353_00750 at 165.665 kb on - strand, within AO353_00750 at 165.861 kb on + strand, within AO353_00750 at 165.861 kb on + strand, within AO353_00750 at 165.862 kb on - strand, within AO353_00750 at 165.862 kb on - strand, within AO353_00750 at 165.869 kb on + strand, within AO353_00750 at 165.870 kb on - strand, within AO353_00750 at 165.870 kb on - strand, within AO353_00750 at 165.995 kb on + strand at 165.996 kb on - strand at 165.996 kb on - strand at 165.996 kb on - strand at 165.996 kb on - strand at 165.996 kb on - strand at 165.998 kb on + strand at 165.999 kb on - strand at 165.999 kb on - strand at 165.999 kb on - strand at 166.023 kb on + strand at 166.023 kb on + strand at 166.023 kb on + strand at 166.023 kb on + strand at 166.023 kb on + strand at 166.023 kb on + strand at 166.024 kb on - strand at 166.024 kb on - strand at 166.024 kb on - strand at 166.024 kb on - strand at 166.031 kb on - strand at 166.049 kb on + strand at 166.049 kb on + strand at 166.050 kb on - strand at 166.050 kb on - strand at 166.078 kb on - strand at 166.078 kb on - strand at 166.085 kb on + strand at 166.085 kb on + strand at 166.085 kb on + strand at 166.085 kb on + strand at 166.086 kb on - strand at 166.087 kb on + strand at 166.087 kb on + strand at 166.087 kb on + strand at 166.087 kb on + strand at 166.087 kb on + strand at 166.087 kb on + strand at 166.088 kb on - strand at 166.088 kb on - strand at 166.088 kb on - strand at 166.088 kb on - strand at 166.088 kb on - strand at 166.088 kb on - strand at 166.088 kb on - strand at 166.088 kb on - strand at 166.088 kb on - strand at 166.088 kb on - strand at 166.101 kb on + strand at 166.101 kb on + strand at 166.101 kb on + strand at 166.102 kb on - strand at 166.123 kb on + strand at 166.124 kb on - strand at 166.129 kb on + strand at 166.129 kb on + strand at 166.209 kb on + strand at 166.226 kb on + strand at 166.235 kb on - strand at 166.295 kb on + strand at 166.295 kb on + strand at 166.295 kb on + strand at 166.296 kb on - strand at 166.296 kb on - strand at 166.296 kb on - strand at 166.296 kb on - strand at 166.301 kb on + strand at 166.301 kb on + strand at 166.301 kb on + strand at 166.301 kb on + strand at 166.301 kb on + strand at 166.301 kb on + strand at 166.302 kb on - strand at 166.302 kb on - strand at 166.302 kb on - strand at 166.302 kb on - strand at 166.302 kb on - strand at 166.302 kb on - strand at 166.302 kb on - strand at 166.302 kb on - strand at 166.302 kb on - strand at 166.303 kb on + strand at 166.399 kb on + strand at 166.399 kb on + strand at 166.400 kb on - strand at 166.622 kb on + strand, within AO353_00755 at 166.643 kb on + strand, within AO353_00755 at 166.643 kb on + strand, within AO353_00755 at 166.644 kb on - strand, within AO353_00755 at 166.644 kb on - strand, within AO353_00755 at 166.826 kb on + strand, within AO353_00755 at 166.827 kb on - strand, within AO353_00755 at 166.827 kb on - strand, within AO353_00755 at 166.827 kb on - strand, within AO353_00755 at 166.827 kb on - strand, within AO353_00755 at 166.827 kb on - strand, within AO353_00755
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 164,230 + AO353_00745 0.40 +1.0 164,231 - AO353_00745 0.40 -0.4 164,231 - AO353_00745 0.40 -0.8 164,257 + AO353_00745 0.42 -0.3 164,257 + AO353_00745 0.42 +1.8 164,257 + AO353_00745 0.42 +0.4 164,257 + AO353_00745 0.42 -0.7 164,257 + AO353_00745 0.42 +0.9 164,258 - AO353_00745 0.42 +0.0 164,258 - AO353_00745 0.42 -0.5 164,312 - AO353_00745 0.46 -0.8 164,312 - AO353_00745 0.46 -0.9 164,398 + +3.1 164,398 + AO353_00745 0.52 -0.7 164,398 + AO353_00745 0.52 -0.5 164,398 + AO353_00745 0.52 -1.6 164,398 + AO353_00745 0.52 +0.6 164,398 + AO353_00745 0.52 -0.5 164,398 + AO353_00745 0.52 -0.8 164,398 + AO353_00745 0.52 +0.8 164,399 - AO353_00745 0.52 -0.9 164,399 - AO353_00745 0.52 +0.2 164,399 - AO353_00745 0.52 +2.5 164,399 - AO353_00745 0.52 -0.3 164,399 - AO353_00745 0.52 -0.3 164,399 - AO353_00745 0.52 +0.5 164,485 + AO353_00745 0.59 -1.5 164,486 - AO353_00745 0.59 +2.3 164,486 - +0.1 164,494 + AO353_00745 0.60 -0.5 164,494 + AO353_00745 0.60 +0.6 164,495 - AO353_00745 0.60 -0.7 164,731 + AO353_00745 0.78 +0.2 164,731 + AO353_00745 0.78 -1.9 164,732 - AO353_00745 0.78 +1.3 164,732 - AO353_00745 0.78 +1.1 164,732 - AO353_00745 0.78 -0.5 164,732 - AO353_00745 0.78 +0.6 164,782 + AO353_00745 0.82 -0.6 164,783 - AO353_00745 0.82 -0.0 164,878 + AO353_00745 0.89 -1.0 164,878 + AO353_00745 0.89 +1.3 164,878 + AO353_00745 0.89 +0.7 164,878 + AO353_00745 0.89 -0.9 164,878 + AO353_00745 0.89 +0.3 164,878 + AO353_00745 0.89 -0.1 164,878 + AO353_00745 0.89 +0.3 164,879 - AO353_00745 0.89 -0.6 164,879 - AO353_00745 0.89 +0.5 164,879 - AO353_00745 0.89 -0.8 164,879 - AO353_00745 0.89 -0.8 164,879 - AO353_00745 0.89 +0.9 164,879 - AO353_00745 0.89 -0.3 164,879 - AO353_00745 0.89 -1.7 164,986 + -2.7 164,987 - -0.1 164,987 - -0.7 165,002 + +0.5 165,002 + -0.5 165,002 + +0.6 165,002 + +0.6 165,002 + +0.3 165,002 + -0.2 165,002 + -1.2 165,003 - +0.0 165,003 - -0.9 165,003 - +2.1 165,003 - +1.1 165,016 + -0.6 165,072 + -0.4 165,111 + +0.1 165,111 + -0.1 165,111 + -0.6 165,112 - -0.4 165,142 - +0.7 165,142 - -2.4 165,185 + -1.7 165,186 - -1.5 165,186 - -1.1 165,186 - +0.1 165,384 - AO353_00750 0.26 -1.7 165,384 - AO353_00750 0.26 -0.0 165,413 + AO353_00750 0.30 -2.3 165,613 + AO353_00750 0.56 +0.1 165,664 + AO353_00750 0.62 -1.1 165,665 - AO353_00750 0.62 -0.7 165,861 + AO353_00750 0.88 -1.9 165,861 + AO353_00750 0.88 +0.1 165,862 - AO353_00750 0.88 -0.3 165,862 - AO353_00750 0.88 -1.8 165,869 + AO353_00750 0.89 -0.9 165,870 - AO353_00750 0.89 -1.1 165,870 - AO353_00750 0.89 -1.5 165,995 + -1.3 165,996 - +0.0 165,996 - -1.1 165,996 - -1.4 165,996 - +0.9 165,996 - +0.1 165,998 + -0.4 165,999 - -1.5 165,999 - +0.6 165,999 - -1.0 166,023 + -1.1 166,023 + -1.9 166,023 + +0.5 166,023 + +0.6 166,023 + +0.1 166,023 + -1.0 166,024 - -1.5 166,024 - -0.3 166,024 - -0.6 166,024 - +0.4 166,031 - -1.4 166,049 + -0.4 166,049 + -0.7 166,050 - +0.4 166,050 - +0.9 166,078 - -1.2 166,078 - +0.5 166,085 + -0.4 166,085 + +0.5 166,085 + +0.1 166,085 + -2.1 166,086 - -0.2 166,087 + +0.9 166,087 + -1.5 166,087 + -0.1 166,087 + +1.5 166,087 + +1.1 166,087 + -1.3 166,088 - -1.3 166,088 - -0.1 166,088 - +1.1 166,088 - -0.1 166,088 - -0.8 166,088 - +0.6 166,088 - +0.0 166,088 - +0.3 166,088 - -0.9 166,088 - -1.1 166,101 + -0.5 166,101 + +0.5 166,101 + -1.1 166,102 - -0.7 166,123 + +1.8 166,124 - -0.2 166,129 + +0.8 166,129 + -1.8 166,209 + +0.1 166,226 + -0.9 166,235 - -1.4 166,295 + +0.5 166,295 + +0.3 166,295 + -0.7 166,296 - +0.2 166,296 - +0.1 166,296 - -1.4 166,296 - +0.5 166,301 + -1.9 166,301 + -0.9 166,301 + -0.3 166,301 + +2.9 166,301 + -1.9 166,301 + -1.1 166,302 - -1.3 166,302 - +0.5 166,302 - +0.7 166,302 - +0.6 166,302 - +0.5 166,302 - -1.3 166,302 - -1.3 166,302 - -0.4 166,302 - +0.7 166,303 + -1.7 166,399 + -1.8 166,399 + +0.9 166,400 - +0.1 166,622 + AO353_00755 0.25 +0.6 166,643 + AO353_00755 0.26 -0.2 166,643 + AO353_00755 0.26 -1.9 166,644 - AO353_00755 0.26 +0.7 166,644 - AO353_00755 0.26 +0.5 166,826 + AO353_00755 0.42 +0.2 166,827 - AO353_00755 0.42 +0.5 166,827 - AO353_00755 0.42 +1.1 166,827 - AO353_00755 0.42 -0.8 166,827 - AO353_00755 0.42 +0.1 166,827 - AO353_00755 0.42 -0.9
Or see this region's nucleotide sequence