Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00515

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00510 and AO353_00515 are separated by 538 nucleotidesAO353_00515 and AO353_00520 are separated by 104 nucleotidesAO353_00520 and AO353_00525 are separated by 179 nucleotides AO353_00510: AO353_00510 - multifunctional fatty acid oxidation complex subunit alpha, at 103,105 to 105,252 _00510 AO353_00515: AO353_00515 - hypothetical protein, at 105,791 to 106,228 _00515 AO353_00520: AO353_00520 - universal stress protein UspA, at 106,333 to 106,770 _00520 AO353_00525: AO353_00525 - ABC transporter ATP-binding protein, at 106,950 to 108,866 _00525 Position (kb) 105 106 107Strain fitness (log2 ratio) -2 -1 0 1 2at 104.817 kb on - strand, within AO353_00510at 104.817 kb on - strand, within AO353_00510at 105.061 kb on + strandat 105.061 kb on + strandat 105.061 kb on + strandat 105.062 kb on - strandat 105.062 kb on - strandat 105.062 kb on - strandat 105.133 kb on + strandat 105.133 kb on + strandat 105.134 kb on - strandat 105.134 kb on - strandat 105.134 kb on - strandat 105.134 kb on - strandat 105.134 kb on - strandat 105.134 kb on - strandat 105.237 kb on + strandat 105.237 kb on + strandat 105.238 kb on - strandat 105.245 kb on + strandat 105.245 kb on + strandat 105.245 kb on + strandat 105.245 kb on + strandat 105.245 kb on + strandat 105.246 kb on - strandat 105.285 kb on + strandat 105.285 kb on + strandat 105.285 kb on + strandat 105.286 kb on - strandat 105.325 kb on - strandat 105.337 kb on - strandat 105.372 kb on - strandat 105.385 kb on + strandat 105.398 kb on + strandat 105.398 kb on + strandat 105.399 kb on - strandat 105.399 kb on - strandat 105.401 kb on + strandat 105.401 kb on + strandat 105.402 kb on - strandat 105.402 kb on - strandat 105.402 kb on - strandat 105.402 kb on - strandat 105.554 kb on + strandat 105.554 kb on + strandat 105.554 kb on + strandat 105.554 kb on + strandat 105.555 kb on - strandat 105.555 kb on - strandat 105.560 kb on + strandat 105.560 kb on + strandat 105.560 kb on + strandat 105.561 kb on - strandat 105.561 kb on - strandat 105.570 kb on - strandat 105.570 kb on - strandat 105.570 kb on - strandat 105.573 kb on + strandat 105.587 kb on + strandat 105.587 kb on + strandat 105.588 kb on - strandat 105.588 kb on - strandat 105.588 kb on - strandat 105.591 kb on + strandat 105.591 kb on + strandat 105.591 kb on + strandat 105.591 kb on + strandat 105.591 kb on + strandat 105.591 kb on + strandat 105.591 kb on + strandat 105.591 kb on + strandat 105.591 kb on + strandat 105.591 kb on + strandat 105.592 kb on - strandat 105.592 kb on - strandat 105.592 kb on - strandat 105.592 kb on - strandat 105.592 kb on - strandat 105.609 kb on + strandat 105.609 kb on + strandat 105.609 kb on + strandat 105.609 kb on + strandat 105.616 kb on + strandat 105.616 kb on + strandat 105.617 kb on - strandat 105.617 kb on - strandat 105.617 kb on - strandat 105.617 kb on - strandat 105.635 kb on - strandat 105.719 kb on - strandat 105.778 kb on + strandat 105.779 kb on - strandat 105.830 kb on + strandat 105.830 kb on + strandat 105.858 kb on + strand, within AO353_00515at 105.858 kb on + strand, within AO353_00515at 105.858 kb on + strand, within AO353_00515at 105.858 kb on + strand, within AO353_00515at 105.859 kb on - strand, within AO353_00515at 105.894 kb on + strand, within AO353_00515at 105.895 kb on - strand, within AO353_00515at 105.895 kb on - strand, within AO353_00515at 105.895 kb on - strand, within AO353_00515at 105.895 kb on - strand, within AO353_00515at 105.994 kb on - strandat 106.157 kb on - strand, within AO353_00515at 106.228 kb on + strandat 106.228 kb on + strandat 106.228 kb on + strandat 106.228 kb on + strandat 106.228 kb on + strandat 106.228 kb on + strandat 106.228 kb on + strandat 106.229 kb on - strandat 106.229 kb on - strandat 106.235 kb on - strandat 106.235 kb on - strandat 106.296 kb on + strandat 106.296 kb on + strandat 106.296 kb on + strandat 106.296 kb on + strandat 106.296 kb on + strandat 106.296 kb on + strandat 106.296 kb on + strandat 106.296 kb on + strandat 106.296 kb on + strandat 106.297 kb on - strandat 106.297 kb on - strandat 106.297 kb on - strandat 106.297 kb on - strandat 106.300 kb on + strandat 106.300 kb on + strandat 106.300 kb on + strandat 106.347 kb on + strandat 106.347 kb on + strandat 106.347 kb on + strandat 106.347 kb on + strandat 106.347 kb on + strandat 106.348 kb on - strandat 106.348 kb on - strandat 106.348 kb on - strandat 106.348 kb on - strandat 106.348 kb on - strandat 106.361 kb on + strandat 106.361 kb on + strandat 106.368 kb on - strandat 106.368 kb on - strandat 106.368 kb on - strandat 106.446 kb on + strand, within AO353_00520at 106.447 kb on - strand, within AO353_00520at 106.447 kb on - strand, within AO353_00520at 106.447 kb on - strand, within AO353_00520at 106.447 kb on - strand, within AO353_00520at 106.561 kb on + strand, within AO353_00520at 106.561 kb on + strand, within AO353_00520at 106.561 kb on + strand, within AO353_00520at 106.582 kb on + strand, within AO353_00520at 106.583 kb on - strand, within AO353_00520at 106.598 kb on - strand, within AO353_00520at 106.626 kb on + strand, within AO353_00520at 106.626 kb on + strand, within AO353_00520at 106.626 kb on + strand, within AO353_00520at 106.626 kb on + strand, within AO353_00520at 106.627 kb on - strand, within AO353_00520at 106.627 kb on - strand, within AO353_00520at 106.627 kb on - strand, within AO353_00520at 106.772 kb on + strandat 106.772 kb on + strandat 106.772 kb on + strandat 106.772 kb on + strandat 106.772 kb on + strandat 106.772 kb on + strandat 106.773 kb on - strandat 106.773 kb on - strandat 106.773 kb on - strandat 106.795 kb on + strandat 106.795 kb on + strandat 106.795 kb on + strandat 106.795 kb on + strandat 106.795 kb on + strandat 106.796 kb on - strandat 106.796 kb on - strandat 106.796 kb on - strandat 106.796 kb on - strandat 106.826 kb on + strandat 106.827 kb on - strandat 106.827 kb on - strandat 106.880 kb on + strandat 106.880 kb on + strandat 106.880 kb on + strandat 106.881 kb on - strandat 106.916 kb on + strandat 106.916 kb on + strandat 106.917 kb on - strandat 106.983 kb on + strandat 106.984 kb on - strandat 106.984 kb on - strandat 107.053 kb on + strandat 107.053 kb on + strandat 107.053 kb on + strandat 107.054 kb on - strandat 107.054 kb on - strandat 107.054 kb on - strandat 107.054 kb on - strandat 107.152 kb on + strand, within AO353_00525at 107.152 kb on + strand, within AO353_00525at 107.152 kb on + strand, within AO353_00525at 107.152 kb on + strand, within AO353_00525at 107.152 kb on + strand, within AO353_00525at 107.153 kb on - strand, within AO353_00525at 107.153 kb on - strand, within AO353_00525at 107.153 kb on - strand, within AO353_00525at 107.153 kb on - strand, within AO353_00525at 107.153 kb on - strand, within AO353_00525at 107.153 kb on - strand, within AO353_00525at 107.153 kb on - strand, within AO353_00525

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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104,817 - AO353_00510 0.80 -0.5
104,817 - AO353_00510 0.80 +0.3
105,061 + +1.1
105,061 + +0.7
105,061 + -0.4
105,062 - +1.3
105,062 - +0.0
105,062 - -0.2
105,133 + +0.3
105,133 + +0.6
105,134 - -0.3
105,134 - +1.4
105,134 - -0.0
105,134 - -0.3
105,134 - -0.4
105,134 - +1.5
105,237 + -1.2
105,237 + +1.8
105,238 - +0.3
105,245 + +0.9
105,245 + +0.9
105,245 + -0.8
105,245 + +0.4
105,245 + +0.5
105,246 - -1.3
105,285 + -0.5
105,285 + -1.0
105,285 + +1.5
105,286 - -0.3
105,325 - +1.9
105,337 - -1.1
105,372 - -0.1
105,385 + -0.0
105,398 + -0.3
105,398 + -0.1
105,399 - -0.7
105,399 - +0.2
105,401 + +0.1
105,401 + +0.4
105,402 - -2.4
105,402 - +0.1
105,402 - +1.9
105,402 - -0.9
105,554 + -1.6
105,554 + +0.5
105,554 + +1.5
105,554 + +1.2
105,555 - -1.1
105,555 - +1.8
105,560 + -0.3
105,560 + +1.6
105,560 + -0.6
105,561 - +0.5
105,561 - +0.1
105,570 - -1.0
105,570 - +1.5
105,570 - +1.9
105,573 + +2.0
105,587 + +0.5
105,587 + -0.6
105,588 - +0.6
105,588 - +0.1
105,588 - +0.1
105,591 + -0.6
105,591 + -0.9
105,591 + +0.4
105,591 + -0.8
105,591 + +0.6
105,591 + -0.9
105,591 + +1.1
105,591 + +0.7
105,591 + -0.3
105,591 + -0.7
105,592 - +1.2
105,592 - +0.7
105,592 - +1.1
105,592 - +0.4
105,592 - +0.0
105,609 + -0.2
105,609 + +1.1
105,609 + -0.5
105,609 + +0.5
105,616 + +0.6
105,616 + +0.1
105,617 - -0.1
105,617 - +0.7
105,617 - -0.4
105,617 - -1.6
105,635 - +1.3
105,719 - +1.3
105,778 + -1.6
105,779 - -1.0
105,830 + -0.5
105,830 + +0.1
105,858 + AO353_00515 0.15 +0.5
105,858 + AO353_00515 0.15 -1.4
105,858 + AO353_00515 0.15 -1.3
105,858 + AO353_00515 0.15 -1.6
105,859 - AO353_00515 0.16 -1.2
105,894 + AO353_00515 0.24 -2.2
105,895 - AO353_00515 0.24 -0.5
105,895 - AO353_00515 0.24 +1.2
105,895 - AO353_00515 0.24 +0.8
105,895 - AO353_00515 0.24 -1.2
105,994 - +2.5
106,157 - AO353_00515 0.84 -0.1
106,228 + +0.7
106,228 + -1.0
106,228 + -1.0
106,228 + -1.4
106,228 + +0.1
106,228 + -2.1
106,228 + -0.2
106,229 - -0.5
106,229 - -0.5
106,235 - +0.7
106,235 - -1.5
106,296 + -0.8
106,296 + -0.8
106,296 + -0.4
106,296 + -2.2
106,296 + +0.5
106,296 + +0.3
106,296 + +1.8
106,296 + +0.0
106,296 + +0.3
106,297 - -0.8
106,297 - -1.5
106,297 - -1.2
106,297 - +0.6
106,300 + -0.4
106,300 + -0.3
106,300 + -0.1
106,347 + +0.6
106,347 + +1.2
106,347 + +0.2
106,347 + -1.3
106,347 + -0.1
106,348 - -1.3
106,348 - -0.1
106,348 - -1.2
106,348 - -0.5
106,348 - +1.1
106,361 + +0.5
106,361 + -1.3
106,368 - +0.1
106,368 - +0.5
106,368 - -1.4
106,446 + AO353_00520 0.26 +0.0
106,447 - AO353_00520 0.26 -0.6
106,447 - AO353_00520 0.26 +0.4
106,447 - AO353_00520 0.26 -1.2
106,447 - AO353_00520 0.26 -1.7
106,561 + AO353_00520 0.52 -2.2
106,561 + AO353_00520 0.52 +0.1
106,561 + AO353_00520 0.52 -1.3
106,582 + AO353_00520 0.57 +1.7
106,583 - AO353_00520 0.57 -1.4
106,598 - AO353_00520 0.61 -1.8
106,626 + AO353_00520 0.67 -0.4
106,626 + AO353_00520 0.67 +0.5
106,626 + AO353_00520 0.67 +0.1
106,626 + AO353_00520 0.67 -1.1
106,627 - AO353_00520 0.67 -1.2
106,627 - AO353_00520 0.67 +0.3
106,627 - AO353_00520 0.67 -2.1
106,772 + -1.0
106,772 + +0.9
106,772 + -0.0
106,772 + -1.5
106,772 + +2.7
106,772 + +0.7
106,773 - -0.3
106,773 - -0.3
106,773 - +1.0
106,795 + +0.4
106,795 + +0.9
106,795 + -2.0
106,795 + +0.3
106,795 + +2.5
106,796 - +0.1
106,796 - -0.9
106,796 - +2.1
106,796 - +0.1
106,826 + -0.3
106,827 - -0.1
106,827 - +0.1
106,880 + +0.6
106,880 + -0.1
106,880 + +0.1
106,881 - +0.9
106,916 + -1.2
106,916 + +1.9
106,917 - +0.7
106,983 + -0.1
106,984 - -0.2
106,984 - +0.7
107,053 + +0.5
107,053 + +0.8
107,053 + -0.9
107,054 - +0.3
107,054 - -0.6
107,054 - +0.7
107,054 - +0.9
107,152 + AO353_00525 0.11 -1.8
107,152 + AO353_00525 0.11 +0.4
107,152 + AO353_00525 0.11 -0.9
107,152 + AO353_00525 0.11 -1.3
107,152 + AO353_00525 0.11 -2.3
107,153 - AO353_00525 0.11 +0.9
107,153 - AO353_00525 0.11 +0.0
107,153 - AO353_00525 0.11 -0.6
107,153 - AO353_00525 0.11 +0.2
107,153 - AO353_00525 0.11 -1.6
107,153 - AO353_00525 0.11 -0.3
107,153 - AO353_00525 0.11 -0.5

Or see this region's nucleotide sequence