Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00305 and AO353_00310 are separated by 187 nucleotides AO353_00310 and AO353_00315 are separated by 123 nucleotides AO353_00315 and AO353_00320 overlap by 1 nucleotides
AO353_00305: AO353_00305 - ATP-binding protein, at 54,932 to 56,923
_00305
AO353_00310: AO353_00310 - transaldolase, at 57,111 to 58,037
_00310
AO353_00315: AO353_00315 - anti-anti-sigma factor, at 58,161 to 58,643
_00315
AO353_00320: AO353_00320 - chemotaxis protein CheY, at 58,643 to 59,824
_00320
Position (kb)
57
58
59 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 56.144 kb on + strand, within AO353_00305 at 56.144 kb on + strand, within AO353_00305 at 56.144 kb on + strand, within AO353_00305 at 56.144 kb on + strand, within AO353_00305 at 56.144 kb on + strand, within AO353_00305 at 56.144 kb on + strand, within AO353_00305 at 56.144 kb on + strand, within AO353_00305 at 56.144 kb on + strand, within AO353_00305 at 56.144 kb on + strand, within AO353_00305 at 56.144 kb on + strand, within AO353_00305 at 56.144 kb on + strand, within AO353_00305 at 56.144 kb on + strand, within AO353_00305 at 56.144 kb on + strand, within AO353_00305 at 56.145 kb on - strand, within AO353_00305 at 56.145 kb on - strand, within AO353_00305 at 56.145 kb on - strand, within AO353_00305 at 56.145 kb on - strand, within AO353_00305 at 56.145 kb on - strand, within AO353_00305 at 56.145 kb on - strand, within AO353_00305 at 56.145 kb on - strand, within AO353_00305 at 56.145 kb on - strand, within AO353_00305 at 56.145 kb on - strand, within AO353_00305 at 56.145 kb on - strand, within AO353_00305 at 56.145 kb on - strand, within AO353_00305 at 56.145 kb on - strand, within AO353_00305 at 56.145 kb on - strand, within AO353_00305 at 56.153 kb on - strand, within AO353_00305 at 56.153 kb on - strand, within AO353_00305 at 56.241 kb on + strand, within AO353_00305 at 56.242 kb on - strand, within AO353_00305 at 56.242 kb on - strand, within AO353_00305 at 56.242 kb on - strand, within AO353_00305 at 56.307 kb on + strand, within AO353_00305 at 56.307 kb on + strand, within AO353_00305 at 56.308 kb on - strand, within AO353_00305 at 56.315 kb on - strand, within AO353_00305 at 56.328 kb on + strand, within AO353_00305 at 56.328 kb on + strand, within AO353_00305 at 56.328 kb on + strand, within AO353_00305 at 56.328 kb on + strand, within AO353_00305 at 56.329 kb on - strand, within AO353_00305 at 56.329 kb on - strand, within AO353_00305 at 56.329 kb on - strand, within AO353_00305 at 56.329 kb on - strand, within AO353_00305 at 56.329 kb on - strand, within AO353_00305 at 56.332 kb on + strand, within AO353_00305 at 56.332 kb on + strand, within AO353_00305 at 56.332 kb on + strand, within AO353_00305 at 56.332 kb on + strand, within AO353_00305 at 56.332 kb on + strand, within AO353_00305 at 56.332 kb on + strand, within AO353_00305 at 56.332 kb on + strand, within AO353_00305 at 56.333 kb on - strand, within AO353_00305 at 56.333 kb on - strand, within AO353_00305 at 56.333 kb on - strand, within AO353_00305 at 56.333 kb on - strand, within AO353_00305 at 56.333 kb on - strand, within AO353_00305 at 56.333 kb on - strand, within AO353_00305 at 56.333 kb on - strand, within AO353_00305 at 56.333 kb on - strand, within AO353_00305 at 56.333 kb on - strand, within AO353_00305 at 56.333 kb on - strand, within AO353_00305 at 56.333 kb on - strand, within AO353_00305 at 56.340 kb on - strand, within AO353_00305 at 56.340 kb on - strand, within AO353_00305 at 56.356 kb on + strand, within AO353_00305 at 56.357 kb on - strand, within AO353_00305 at 56.379 kb on + strand, within AO353_00305 at 56.379 kb on + strand, within AO353_00305 at 56.380 kb on - strand, within AO353_00305 at 56.650 kb on + strand, within AO353_00305 at 56.651 kb on - strand, within AO353_00305 at 56.764 kb on + strand at 56.765 kb on - strand at 56.822 kb on + strand at 56.822 kb on + strand at 56.822 kb on + strand at 56.822 kb on + strand at 56.822 kb on + strand at 56.822 kb on + strand at 56.823 kb on - strand at 56.823 kb on - strand at 56.823 kb on - strand at 56.823 kb on - strand at 56.823 kb on - strand at 56.823 kb on - strand at 56.824 kb on + strand at 56.824 kb on + strand at 56.824 kb on + strand at 56.825 kb on - strand at 56.898 kb on + strand at 56.898 kb on + strand at 56.898 kb on + strand at 56.899 kb on - strand at 56.899 kb on - strand at 56.926 kb on + strand at 56.926 kb on + strand at 56.926 kb on + strand at 56.926 kb on + strand at 56.927 kb on - strand at 56.956 kb on - strand at 56.956 kb on - strand at 56.956 kb on - strand at 56.973 kb on + strand at 56.973 kb on + strand at 56.973 kb on + strand at 56.973 kb on + strand at 56.973 kb on + strand at 56.974 kb on - strand at 56.974 kb on - strand at 56.974 kb on - strand at 56.977 kb on + strand at 56.977 kb on + strand at 56.978 kb on - strand at 57.039 kb on + strand at 57.039 kb on + strand at 57.099 kb on + strand at 57.151 kb on + strand at 57.152 kb on - strand at 57.252 kb on + strand, within AO353_00310 at 57.253 kb on - strand at 57.366 kb on - strand, within AO353_00310 at 57.366 kb on - strand, within AO353_00310 at 57.366 kb on - strand, within AO353_00310 at 57.445 kb on - strand, within AO353_00310 at 57.540 kb on - strand, within AO353_00310 at 57.636 kb on + strand, within AO353_00310 at 57.636 kb on + strand, within AO353_00310 at 57.636 kb on + strand, within AO353_00310 at 57.637 kb on - strand, within AO353_00310 at 57.637 kb on - strand, within AO353_00310 at 57.637 kb on - strand, within AO353_00310 at 57.637 kb on - strand, within AO353_00310 at 57.645 kb on + strand, within AO353_00310 at 57.645 kb on + strand, within AO353_00310 at 57.645 kb on + strand, within AO353_00310 at 57.645 kb on + strand, within AO353_00310 at 57.669 kb on + strand, within AO353_00310 at 57.669 kb on + strand, within AO353_00310 at 57.669 kb on + strand, within AO353_00310 at 57.670 kb on - strand, within AO353_00310 at 57.670 kb on - strand, within AO353_00310 at 57.714 kb on + strand, within AO353_00310 at 57.714 kb on + strand, within AO353_00310 at 57.714 kb on + strand, within AO353_00310 at 57.715 kb on - strand, within AO353_00310 at 57.715 kb on - strand, within AO353_00310 at 57.715 kb on - strand, within AO353_00310 at 57.715 kb on - strand, within AO353_00310 at 57.715 kb on - strand, within AO353_00310 at 57.720 kb on + strand, within AO353_00310 at 57.720 kb on + strand, within AO353_00310 at 57.720 kb on + strand, within AO353_00310 at 57.720 kb on + strand, within AO353_00310 at 57.720 kb on + strand, within AO353_00310 at 57.721 kb on - strand, within AO353_00310 at 57.721 kb on - strand, within AO353_00310 at 57.721 kb on - strand, within AO353_00310 at 57.723 kb on + strand, within AO353_00310 at 57.723 kb on + strand, within AO353_00310 at 57.723 kb on + strand, within AO353_00310 at 57.723 kb on + strand, within AO353_00310 at 57.724 kb on - strand, within AO353_00310 at 57.724 kb on - strand, within AO353_00310 at 57.724 kb on - strand, within AO353_00310 at 57.724 kb on - strand, within AO353_00310 at 57.724 kb on - strand, within AO353_00310 at 57.724 kb on - strand, within AO353_00310 at 57.738 kb on + strand, within AO353_00310 at 57.738 kb on + strand, within AO353_00310 at 57.738 kb on + strand, within AO353_00310 at 57.738 kb on + strand, within AO353_00310 at 57.739 kb on - strand, within AO353_00310 at 57.739 kb on - strand, within AO353_00310 at 57.739 kb on - strand, within AO353_00310 at 57.739 kb on - strand, within AO353_00310 at 57.739 kb on - strand, within AO353_00310 at 57.978 kb on - strand at 57.978 kb on - strand at 57.978 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 56,144 + AO353_00305 0.61 -0.1 56,144 + AO353_00305 0.61 +0.4 56,144 + AO353_00305 0.61 +0.6 56,144 + AO353_00305 0.61 -0.9 56,144 + AO353_00305 0.61 -0.3 56,144 + AO353_00305 0.61 -1.2 56,144 + AO353_00305 0.61 +1.2 56,144 + AO353_00305 0.61 -1.8 56,144 + AO353_00305 0.61 -0.3 56,144 + AO353_00305 0.61 -0.8 56,144 + AO353_00305 0.61 -1.2 56,144 + AO353_00305 0.61 -3.0 56,144 + AO353_00305 0.61 -0.0 56,145 - AO353_00305 0.61 +0.5 56,145 - AO353_00305 0.61 +0.8 56,145 - AO353_00305 0.61 +0.3 56,145 - AO353_00305 0.61 -0.9 56,145 - AO353_00305 0.61 +0.5 56,145 - AO353_00305 0.61 -1.7 56,145 - AO353_00305 0.61 -1.2 56,145 - AO353_00305 0.61 -1.5 56,145 - AO353_00305 0.61 +0.5 56,145 - AO353_00305 0.61 +0.7 56,145 - AO353_00305 0.61 +0.1 56,145 - AO353_00305 0.61 +1.0 56,145 - AO353_00305 0.61 +1.6 56,153 - AO353_00305 0.61 -0.5 56,153 - AO353_00305 0.61 -0.1 56,241 + AO353_00305 0.66 +0.4 56,242 - AO353_00305 0.66 +0.5 56,242 - AO353_00305 0.66 +0.3 56,242 - AO353_00305 0.66 -0.7 56,307 + AO353_00305 0.69 -0.9 56,307 + AO353_00305 0.69 -0.0 56,308 - AO353_00305 0.69 +0.1 56,315 - AO353_00305 0.69 +1.0 56,328 + AO353_00305 0.70 +1.5 56,328 + AO353_00305 0.70 -1.3 56,328 + AO353_00305 0.70 -0.1 56,328 + AO353_00305 0.70 +1.1 56,329 - AO353_00305 0.70 -1.2 56,329 - AO353_00305 0.70 -0.9 56,329 - AO353_00305 0.70 -1.1 56,329 - AO353_00305 0.70 -0.7 56,329 - AO353_00305 0.70 -0.3 56,332 + AO353_00305 0.70 -0.3 56,332 + AO353_00305 0.70 +1.1 56,332 + AO353_00305 0.70 +0.4 56,332 + AO353_00305 0.70 +0.9 56,332 + AO353_00305 0.70 +0.6 56,332 + AO353_00305 0.70 -0.5 56,332 + AO353_00305 0.70 -2.1 56,333 - AO353_00305 0.70 -0.8 56,333 - AO353_00305 0.70 +0.7 56,333 - AO353_00305 0.70 +0.5 56,333 - AO353_00305 0.70 +0.1 56,333 - AO353_00305 0.70 -0.1 56,333 - AO353_00305 0.70 +0.2 56,333 - AO353_00305 0.70 -0.6 56,333 - AO353_00305 0.70 +2.5 56,333 - AO353_00305 0.70 +0.8 56,333 - AO353_00305 0.70 -1.1 56,333 - AO353_00305 0.70 -1.3 56,340 - AO353_00305 0.71 -0.9 56,340 - AO353_00305 0.71 -0.6 56,356 + AO353_00305 0.71 +0.1 56,357 - AO353_00305 0.72 +0.9 56,379 + AO353_00305 0.73 -1.6 56,379 + AO353_00305 0.73 +0.7 56,380 - AO353_00305 0.73 -1.1 56,650 + AO353_00305 0.86 -0.5 56,651 - AO353_00305 0.86 -1.1 56,764 + -0.2 56,765 - -1.7 56,822 + +1.7 56,822 + +0.4 56,822 + -0.1 56,822 + -0.1 56,822 + -0.1 56,822 + -0.9 56,823 - +0.9 56,823 - -1.0 56,823 - -0.2 56,823 - +1.5 56,823 - +0.9 56,823 - -0.4 56,824 + +0.1 56,824 + +0.9 56,824 + +0.3 56,825 - -0.1 56,898 + +0.4 56,898 + -2.4 56,898 + -0.1 56,899 - +0.2 56,899 - +1.6 56,926 + +1.2 56,926 + +1.7 56,926 + -0.2 56,926 + +0.4 56,927 - -0.9 56,956 - +0.3 56,956 - -0.7 56,956 - -0.9 56,973 + -0.4 56,973 + +0.0 56,973 + -1.5 56,973 + +0.4 56,973 + -0.4 56,974 - +0.3 56,974 - +1.5 56,974 - -2.3 56,977 + +0.2 56,977 + -0.2 56,978 - +1.2 57,039 + +1.6 57,039 + +0.3 57,099 + -0.1 57,151 + -1.1 57,152 - -1.1 57,252 + AO353_00310 0.15 -1.3 57,253 - -0.5 57,366 - AO353_00310 0.28 -0.5 57,366 - AO353_00310 0.28 +0.5 57,366 - AO353_00310 0.28 +0.1 57,445 - AO353_00310 0.36 -1.1 57,540 - AO353_00310 0.46 -0.5 57,636 + AO353_00310 0.57 -0.1 57,636 + AO353_00310 0.57 -2.1 57,636 + AO353_00310 0.57 +0.7 57,637 - AO353_00310 0.57 -2.5 57,637 - AO353_00310 0.57 -1.1 57,637 - AO353_00310 0.57 -1.4 57,637 - AO353_00310 0.57 -0.9 57,645 + AO353_00310 0.58 -1.1 57,645 + AO353_00310 0.58 -2.3 57,645 + AO353_00310 0.58 -2.7 57,645 + AO353_00310 0.58 -1.7 57,669 + AO353_00310 0.60 -0.9 57,669 + AO353_00310 0.60 -0.9 57,669 + AO353_00310 0.60 -2.1 57,670 - AO353_00310 0.60 -2.8 57,670 - AO353_00310 0.60 -3.0 57,714 + AO353_00310 0.65 -1.9 57,714 + AO353_00310 0.65 -2.7 57,714 + AO353_00310 0.65 -2.6 57,715 - AO353_00310 0.65 -1.8 57,715 - AO353_00310 0.65 -1.3 57,715 - AO353_00310 0.65 -1.6 57,715 - AO353_00310 0.65 -1.8 57,715 - AO353_00310 0.65 -1.7 57,720 + AO353_00310 0.66 +0.1 57,720 + AO353_00310 0.66 -1.5 57,720 + AO353_00310 0.66 -0.7 57,720 + AO353_00310 0.66 -0.5 57,720 + AO353_00310 0.66 -0.1 57,721 - AO353_00310 0.66 +0.5 57,721 - AO353_00310 0.66 -1.7 57,721 - AO353_00310 0.66 -1.7 57,723 + AO353_00310 0.66 -2.7 57,723 + AO353_00310 0.66 -1.5 57,723 + AO353_00310 0.66 -1.4 57,723 + AO353_00310 0.66 -2.9 57,724 - AO353_00310 0.66 -3.3 57,724 - AO353_00310 0.66 -2.6 57,724 - AO353_00310 0.66 -1.1 57,724 - AO353_00310 0.66 -0.1 57,724 - AO353_00310 0.66 -2.8 57,724 - AO353_00310 0.66 -2.4 57,738 + AO353_00310 0.68 -0.9 57,738 + AO353_00310 0.68 -1.5 57,738 + AO353_00310 0.68 -2.0 57,738 + AO353_00310 0.68 -1.8 57,739 - AO353_00310 0.68 -1.5 57,739 - AO353_00310 0.68 +0.5 57,739 - AO353_00310 0.68 -0.7 57,739 - AO353_00310 0.68 -2.2 57,739 - AO353_00310 0.68 +0.1 57,978 - -2.3 57,978 - -0.1 57,978 - -1.8
Or see this region's nucleotide sequence