Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_003973 and ABIE53_003974 are separated by 357 nucleotides ABIE53_003974 and ABIE53_003975 are separated by 112 nucleotides
ABIE53_003973: ABIE53_003973 - 3-oxoadipate enol-lactonase, at 126,063 to 126,899
_003973
ABIE53_003974: ABIE53_003974 - NitT/TauT family transport system permease protein, at 127,257 to 128,048
_003974
ABIE53_003975: ABIE53_003975 - NitT/TauT family transport system substrate-binding protein, at 128,161 to 129,153
_003975
Position (kb) 127
128
129 Strain fitness (log2 ratio) -2
-1
0
1 at 126.661 kb on + strand, within ABIE53_003973 at 126.661 kb on + strand, within ABIE53_003973 at 127.003 kb on + strand at 127.004 kb on - strand at 127.116 kb on + strand at 127.117 kb on - strand at 127.117 kb on - strand at 127.117 kb on - strand at 127.242 kb on + strand at 127.243 kb on - strand at 127.310 kb on + strand at 127.311 kb on - strand at 127.311 kb on - strand at 127.453 kb on - strand, within ABIE53_003974 at 127.539 kb on + strand, within ABIE53_003974 at 127.540 kb on - strand, within ABIE53_003974 at 127.545 kb on + strand, within ABIE53_003974 at 127.636 kb on + strand, within ABIE53_003974 at 128.299 kb on + strand, within ABIE53_003975 at 128.300 kb on - strand, within ABIE53_003975 at 128.300 kb on - strand, within ABIE53_003975 at 128.320 kb on + strand, within ABIE53_003975
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 126,661 + ABIE53_003973 0.71 -2.0 126,661 + ABIE53_003973 0.71 +1.6 127,003 + -0.4 127,004 - +0.2 127,116 + +1.6 127,117 - -2.3 127,117 - +1.6 127,117 - +0.4 127,242 + -1.3 127,243 - -2.4 127,310 + -0.0 127,311 - +0.6 127,311 - +0.5 127,453 - ABIE53_003974 0.25 +0.3 127,539 + ABIE53_003974 0.36 -1.1 127,540 - ABIE53_003974 0.36 -0.7 127,545 + ABIE53_003974 0.36 -0.4 127,636 + ABIE53_003974 0.48 -0.3 128,299 + ABIE53_003975 0.14 -1.4 128,300 - ABIE53_003975 0.14 +0.3 128,300 - ABIE53_003975 0.14 -1.0 128,320 + ABIE53_003975 0.16 -1.4
Or see this region's nucleotide sequence