Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003216

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
3,635,573	-				-1.1
3,635,704	+		ABIE53_003215	0.15	-1.2
3,635,704	+		ABIE53_003215	0.15	-1.0
3,635,704	+		ABIE53_003215	0.15	-0.2
3,635,758	-		ABIE53_003215	0.23	-0.1
3,635,758	-		ABIE53_003215	0.23	-2.2
3,635,758	-		ABIE53_003215	0.23	+0.5
3,635,814	+		ABIE53_003215	0.31	+2.3
3,635,814	+		ABIE53_003215	0.31	+0.8
3,635,814	+		ABIE53_003215	0.31	-2.4
3,635,814	+		ABIE53_003215	0.31	+1.8
3,635,814	+		ABIE53_003215	0.31	+0.3
3,635,815	-		ABIE53_003215	0.31	-0.7
3,635,815	-		ABIE53_003215	0.31	-1.2
3,635,815	-		ABIE53_003215	0.31	-1.5
3,635,815	-		ABIE53_003215	0.31	+0.8
3,635,815	-		ABIE53_003215	0.31	+0.5
3,635,815	-		ABIE53_003215	0.31	-0.2
3,635,815	-		ABIE53_003215	0.31	+2.3
3,635,815	-		ABIE53_003215	0.31	+1.1
3,635,815	-		ABIE53_003215	0.31	+0.8
3,635,815	-		ABIE53_003215	0.31	-1.8
3,635,878	-		ABIE53_003215	0.40	+0.4
3,635,878	-		ABIE53_003215	0.40	-1.8
3,635,892	+		ABIE53_003215	0.42	-1.6
3,635,892	+		ABIE53_003215	0.42	-0.2
3,635,892	+		ABIE53_003215	0.42	-0.4
3,635,892	+		ABIE53_003215	0.42	+0.0
3,635,892	+		ABIE53_003215	0.42	+0.8
3,635,893	-		ABIE53_003215	0.42	+0.3
3,635,893	-		ABIE53_003215	0.42	+1.9
3,635,893	-		ABIE53_003215	0.42	-0.0
3,635,893	-		ABIE53_003215	0.42	-0.7
3,635,931	+		ABIE53_003215	0.48	-0.8
3,635,932	-		ABIE53_003215	0.48	-1.0
3,635,973	+		ABIE53_003215	0.54	-0.4
3,635,973	+		ABIE53_003215	0.54	-1.0
3,635,973	+		ABIE53_003215	0.54	-0.4
3,635,973	+		ABIE53_003215	0.54	-3.1
3,635,973	+		ABIE53_003215	0.54	-0.2
3,635,973	+		ABIE53_003215	0.54	+1.3
3,635,973	+		ABIE53_003215	0.54	-2.4
3,635,973	+		ABIE53_003215	0.54	+0.4
3,635,973	+		ABIE53_003215	0.54	-2.8
3,635,973	+		ABIE53_003215	0.54	-1.2
3,635,974	-		ABIE53_003215	0.54	+1.3
3,635,974	-		ABIE53_003215	0.54	+0.2
3,635,974	-		ABIE53_003215	0.54	+1.3
3,635,974	-		ABIE53_003215	0.54	+0.4
3,635,974	-		ABIE53_003215	0.54	-0.3
3,635,974	-		ABIE53_003215	0.54	+2.3
3,635,974	-		ABIE53_003215	0.54	-0.8
3,635,974	-		ABIE53_003215	0.54	-1.5
3,635,976	+		ABIE53_003215	0.54	-2.3
3,635,976	+		ABIE53_003215	0.54	-0.2
3,635,977	-		ABIE53_003215	0.54	+3.3
3,636,018	+		ABIE53_003215	0.60	-1.0
3,636,019	-		ABIE53_003215	0.60	+0.3
3,636,019	-		ABIE53_003215	0.60	-1.8
3,636,036	+		ABIE53_003215	0.63	+0.3
3,636,036	+		ABIE53_003215	0.63	-2.5
3,636,105	+		ABIE53_003215	0.73	+0.1
3,636,105	+		ABIE53_003215	0.73	+0.8
3,636,105	+		ABIE53_003215	0.73	-0.6
3,636,105	+		ABIE53_003215	0.73	+1.6
3,636,105	+		ABIE53_003215	0.73	-0.3
3,636,105	+		ABIE53_003215	0.73	+1.3
3,636,105	+		ABIE53_003215	0.73	-2.1
3,636,105	+		ABIE53_003215	0.73	-1.7
3,636,105	+		ABIE53_003215	0.73	-0.7
3,636,105	+		ABIE53_003215	0.73	+0.9
3,636,105	+		ABIE53_003215	0.73	+2.0
3,636,105	+		ABIE53_003215	0.73	+0.3
3,636,105	+		ABIE53_003215	0.73	+1.6
3,636,105	+		ABIE53_003215	0.73	-1.2
3,636,106	-		ABIE53_003215	0.73	-1.0
3,636,106	-		ABIE53_003215	0.73	-1.8
3,636,106	-		ABIE53_003215	0.73	-0.8
3,636,106	-		ABIE53_003215	0.73	+0.3
3,636,106	-		ABIE53_003215	0.73	+1.3
3,636,106	-		ABIE53_003215	0.73	-0.2
3,636,106	-		ABIE53_003215	0.73	-0.7
3,636,106	-		ABIE53_003215	0.73	+0.1
3,636,106	-		ABIE53_003215	0.73	-1.8
3,636,106	-		ABIE53_003215	0.73	+0.2
3,636,106	-		ABIE53_003215	0.73	-1.0
3,636,106	-		ABIE53_003215	0.73	+0.7
3,636,106	-		ABIE53_003215	0.73	-1.0
3,636,106	-		ABIE53_003215	0.73	-0.6
3,636,106	-		ABIE53_003215	0.73	+0.8
3,636,106	-		ABIE53_003215	0.73	+1.0
3,636,156	+		ABIE53_003215	0.80	+1.1
3,636,156	+		ABIE53_003215	0.80	+0.6
3,636,156	+		ABIE53_003215	0.80	+1.3
3,636,156	+		ABIE53_003215	0.80	-2.6
3,636,156	+		ABIE53_003215	0.80	+0.3
3,636,156	+		ABIE53_003215	0.80	+0.6
3,636,157	-		ABIE53_003215	0.80	-0.7
3,636,216	+		ABIE53_003215	0.89	+0.3
3,636,216	+		ABIE53_003215	0.89	-0.3
3,636,216	+		ABIE53_003215	0.89	+0.5
3,636,216	+		ABIE53_003215	0.89	-0.6
3,636,216	+		ABIE53_003215	0.89	-0.2
3,636,216	+		ABIE53_003215	0.89	-0.3
3,636,217	-		ABIE53_003215	0.89	+0.3
3,636,217	-		ABIE53_003215	0.89	+2.3
3,636,217	-		ABIE53_003215	0.89	-2.0
3,636,217	-		ABIE53_003215	0.89	+0.3
3,636,217	-		ABIE53_003215	0.89	-2.6
3,636,217	-		ABIE53_003215	0.89	-0.8
3,636,217	-		ABIE53_003215	0.89	+0.9
3,636,217	-		ABIE53_003215	0.89	-0.5
3,636,217	-		ABIE53_003215	0.89	-1.9
3,636,283	+				-1.7
3,636,283	+				-1.8
3,636,283	+				-0.8
3,636,283	+				-1.0
3,636,284	-				-0.2
3,636,284	-				-0.8
3,636,300	+				-2.7
3,636,300	+				-1.5
3,636,301	-				-0.8
3,636,301	-				-0.0
3,636,301	-				-0.3
3,636,338	+				-1.5
3,636,338	+				-1.2
3,636,338	+				-1.2
3,636,338	+				-1.1
3,636,338	+				+0.3
3,636,338	+				-0.6
3,636,338	+				+1.3
3,636,338	+				-3.7
3,636,338	+				+2.2
3,636,338	+				-1.5
3,636,338	+				-0.2
3,636,338	+				-2.0
3,636,338	+				-0.5
3,636,338	+				-0.7
3,636,338	+				+2.9
3,636,339	-				-2.7
3,636,339	-				+1.3
3,636,339	-				-0.7
3,636,339	-				+0.3
3,636,339	-				-0.5
3,636,339	-				-1.2
3,636,339	-				-1.8
3,636,339	-				-0.2
3,636,339	-				-1.6
3,636,339	-				-1.5
3,636,339	-				-2.9
3,636,339	-				-1.8
3,636,339	-				-0.3
3,636,339	-				-0.6
3,636,339	-				-1.2
3,636,342	+				+0.1
3,636,342	+				+0.2
3,636,342	+				-0.6
3,636,342	+				+2.4
3,636,342	+				+0.0
3,636,342	+				-1.2
3,636,342	+				-2.2
3,636,342	+				-0.1
3,636,342	+				+2.9
3,636,342	+				+1.3
3,636,342	+				-0.1
3,636,343	-				-0.5
3,636,343	-				-0.7
3,636,343	-				-1.0
3,636,343	-				-2.0
3,636,343	-				-1.0
3,636,343	-				+2.3
3,636,343	-				-0.5
3,636,343	-				+0.5
3,636,343	-				-0.9
3,636,343	-				+0.6
3,636,493	+				-0.9
3,636,493	+				+1.5
3,636,493	+				+1.3
3,636,493	+				-0.6
3,636,493	+				-2.1
3,636,493	+				+1.3
3,636,493	+				+0.9
3,636,493	+				+0.8
3,636,494	-				-0.6
3,636,494	-				+0.5
3,636,494	-				+1.3
3,636,494	-				+0.2
3,636,494	-				-0.2
3,636,494	-				+2.4
3,636,494	-				-1.7
3,636,494	-				+0.8
3,636,494	-				+0.0
3,636,494	-				-1.2
3,636,494	-				-1.0
3,636,494	-				-1.5
3,636,555	+				+0.2
3,636,556	+				+0.1
3,636,608	+				-1.5
3,636,608	+				-1.1
3,636,609	-				-2.0
3,636,678	+				+1.3
3,636,678	+				-0.5
3,636,678	+				+0.2
3,636,679	-				-0.4
3,636,886	+		ABIE53_003216	0.14	-0.9
3,636,886	+		ABIE53_003216	0.14	-0.9
3,636,886	+		ABIE53_003216	0.14	-0.4
3,636,886	+		ABIE53_003216	0.14	-0.8
3,636,887	-		ABIE53_003216	0.14	-1.7
3,636,887	-		ABIE53_003216	0.14	-2.2
3,636,905	+		ABIE53_003216	0.15	-0.2
3,636,905	+		ABIE53_003216	0.15	-0.2
3,636,905	+		ABIE53_003216	0.15	-1.8
3,636,905	+		ABIE53_003216	0.15	-1.8
3,636,905	+		ABIE53_003216	0.15	-3.0
3,636,905	+		ABIE53_003216	0.15	-1.5
3,636,905	+		ABIE53_003216	0.15	-1.3
3,636,905	+		ABIE53_003216	0.15	-1.5
3,636,905	+		ABIE53_003216	0.15	+1.3
3,636,906	-		ABIE53_003216	0.15	+1.3
3,636,906	-		ABIE53_003216	0.15	-3.5
3,636,906	-		ABIE53_003216	0.15	-1.1
3,636,906	-		ABIE53_003216	0.15	-0.4
3,636,906	-		ABIE53_003216	0.15	-0.7
3,636,906	-		ABIE53_003216	0.15	-2.6
3,636,906	-		ABIE53_003216	0.15	+0.8
3,636,906	-		ABIE53_003216	0.15	-1.7
3,636,906	-		ABIE53_003216	0.15	+1.3
3,636,906	-		ABIE53_003216	0.15	+0.3
3,636,906	-		ABIE53_003216	0.15	-3.0
3,636,906	-		ABIE53_003216	0.15	-2.2
3,636,906	-		ABIE53_003216	0.15	+0.6
3,636,965	+		ABIE53_003216	0.17	-0.5
3,636,965	+		ABIE53_003216	0.17	+0.5
3,636,965	+		ABIE53_003216	0.17	-1.7
3,636,965	+		ABIE53_003216	0.17	-0.7
3,636,965	+		ABIE53_003216	0.17	+1.3
3,636,965	+		ABIE53_003216	0.17	+0.3
3,636,966	-		ABIE53_003216	0.17	+1.3
3,636,966	-		ABIE53_003216	0.17	-1.2
3,636,966	-		ABIE53_003216	0.17	-0.1
3,636,966	-		ABIE53_003216	0.17	-2.8
3,636,966	-		ABIE53_003216	0.17	-1.4
3,636,966	-		ABIE53_003216	0.17	-0.7
3,636,966	-		ABIE53_003216	0.17	+0.6
3,636,966	-		ABIE53_003216	0.17	-1.2
3,636,966	-		ABIE53_003216	0.17	-0.4
3,636,998	+		ABIE53_003216	0.18	+0.1
3,636,998	+		ABIE53_003216	0.18	+0.3
3,636,998	+		ABIE53_003216	0.18	-0.3
3,636,998	+		ABIE53_003216	0.18	-1.1
3,636,999	-		ABIE53_003216	0.18	+0.3
3,636,999	-		ABIE53_003216	0.18	+1.3
3,636,999	-		ABIE53_003216	0.18	+2.3
3,636,999	-		ABIE53_003216	0.18	-0.9
3,637,130	+		ABIE53_003216	0.23	-0.5
3,637,130	+		ABIE53_003216	0.23	-0.6
3,637,130	+		ABIE53_003216	0.23	+1.3
3,637,130	+		ABIE53_003216	0.23	-1.0
3,637,130	+		ABIE53_003216	0.23	-2.5
3,637,131	-		ABIE53_003216	0.23	-2.1
3,637,131	-		ABIE53_003216	0.23	-1.7
3,637,384	+		ABIE53_003216	0.32	-3.4
3,637,384	+		ABIE53_003216	0.32	-0.4
3,637,384	+		ABIE53_003216	0.32	-2.5
3,637,384	+		ABIE53_003216	0.32	-1.2
3,637,384	+		ABIE53_003216	0.32	-1.2
3,637,385	-		ABIE53_003216	0.32	-1.2
3,637,385	-		ABIE53_003216	0.32	-0.2
3,637,385	-		ABIE53_003216	0.32	-1.0
3,637,385	-		ABIE53_003216	0.32	-1.5
3,637,385	-		ABIE53_003216	0.32	-3.1
3,637,400	+		ABIE53_003216	0.33	+0.9
3,637,400	+		ABIE53_003216	0.33	+0.8
3,637,400	+		ABIE53_003216	0.33	-0.7
3,637,400	+		ABIE53_003216	0.33	+0.4
3,637,400	+		ABIE53_003216	0.33	-2.5
3,637,400	+		ABIE53_003216	0.33	-0.2
3,637,401	-		ABIE53_003216	0.33	-0.2
3,637,401	-		ABIE53_003216	0.33	-1.1
3,637,401	-		ABIE53_003216	0.33	-1.5
3,637,401	-		ABIE53_003216	0.33	-2.5
3,637,401	-		ABIE53_003216	0.33	-2.1
3,637,472	+		ABIE53_003216	0.35	-0.2
3,637,473	-		ABIE53_003216	0.35	+0.2
3,637,712	+		ABIE53_003216	0.44	-1.4
3,637,712	+		ABIE53_003216	0.44	-0.5
3,637,712	+		ABIE53_003216	0.44	-0.3
3,637,712	+		ABIE53_003216	0.44	-1.5
3,637,712	+		ABIE53_003216	0.44	-0.7
3,637,712	+		ABIE53_003216	0.44	-0.2
3,637,712	+		ABIE53_003216	0.44	-3.5
3,637,712	+		ABIE53_003216	0.44	-1.0
3,637,712	+		ABIE53_003216	0.44	-0.1
3,637,713	-		ABIE53_003216	0.44	-1.3
3,637,713	-		ABIE53_003216	0.44	+0.3
3,637,713	-		ABIE53_003216	0.44	-3.0
3,637,713	-		ABIE53_003216	0.44	-2.0
3,637,713	-		ABIE53_003216	0.44	-0.8
3,637,713	-		ABIE53_003216	0.44	-1.9
3,637,713	-		ABIE53_003216	0.44	-0.2
3,637,734	-		ABIE53_003216	0.45	-2.2
3,637,734	-		ABIE53_003216	0.45	+0.3
3,637,734	-		ABIE53_003216	0.45	+0.0
3,637,734	-		ABIE53_003216	0.45	-2.5
3,637,749	-		ABIE53_003216	0.45	-1.0
3,637,749	-		ABIE53_003216	0.45	-2.3
3,637,778	+		ABIE53_003216	0.46	-0.9
3,637,778	+		ABIE53_003216	0.46	-1.3
3,637,778	+		ABIE53_003216	0.46	-1.7
3,637,778	+		ABIE53_003216	0.46	+0.2
3,637,778	+		ABIE53_003216	0.46	+0.3
3,637,778	+		ABIE53_003216	0.46	+0.3
3,637,778	+		ABIE53_003216	0.46	+2.3
3,637,778	+		ABIE53_003216	0.46	-0.7
3,637,779	-		ABIE53_003216	0.46	+0.0
3,637,779	-		ABIE53_003216	0.46	-2.5
3,637,779	-		ABIE53_003216	0.46	-2.4
3,637,826	+		ABIE53_003216	0.48	-0.8
3,637,826	+		ABIE53_003216	0.48	-2.2
3,637,826	+		ABIE53_003216	0.48	-0.2
3,637,826	+		ABIE53_003216	0.48	-2.1
3,637,826	+		ABIE53_003216	0.48	-0.8
3,637,827	-		ABIE53_003216	0.48	+0.9
3,637,827	-		ABIE53_003216	0.48	-1.2
3,637,827	-		ABIE53_003216	0.48	-0.1
3,637,827	-		ABIE53_003216	0.48	+1.0
3,637,827	-		ABIE53_003216	0.48	-1.8
3,637,827	-		ABIE53_003216	0.48	-0.7
3,637,925	+		ABIE53_003216	0.51	-0.2
3,637,925	+		ABIE53_003216	0.51	-0.1
3,637,925	+		ABIE53_003216	0.51	+1.3
3,637,925	+		ABIE53_003216	0.51	+0.8
3,637,925	+		ABIE53_003216	0.51	-1.9
3,637,926	-		ABIE53_003216	0.51	+1.9
3,637,968	-		ABIE53_003216	0.53	-0.2
3,637,988	+		ABIE53_003216	0.54	-1.0
3,637,989	-		ABIE53_003216	0.54	-0.2
3,637,989	-		ABIE53_003216	0.54	-0.7
3,638,012	+		ABIE53_003216	0.55	+0.5
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