Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003114

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
3,525,488	+		ABIE53_003113	0.21	-1.0
3,525,488	+		ABIE53_003113	0.21	+1.5
3,525,488	+		ABIE53_003113	0.21	-0.1
3,525,488	+		ABIE53_003113	0.21	-0.4
3,525,488	+		ABIE53_003113	0.21	-1.0
3,525,488	+		ABIE53_003113	0.21	+0.0
3,525,488	+		ABIE53_003113	0.21	-0.2
3,525,488	+		ABIE53_003113	0.21	+3.1
3,525,489	-		ABIE53_003113	0.21	+0.5
3,525,489	-		ABIE53_003113	0.21	+1.0
3,525,489	-		ABIE53_003113	0.21	+0.0
3,525,536	+		ABIE53_003113	0.27	-1.3
3,525,536	+		ABIE53_003113	0.27	+0.8
3,525,536	+		ABIE53_003113	0.27	-1.2
3,525,536	+		ABIE53_003113	0.27	-2.0
3,525,537	-		ABIE53_003113	0.27	+1.7
3,525,537	-		ABIE53_003113	0.27	+0.9
3,525,537	-		ABIE53_003113	0.27	+1.8
3,525,537	-		ABIE53_003113	0.27	+0.9
3,525,537	-		ABIE53_003113	0.27	+0.4
3,525,537	-		ABIE53_003113	0.27	+1.4
3,525,668	+		ABIE53_003113	0.43	+0.1
3,525,668	+		ABIE53_003113	0.43	-0.4
3,525,668	+		ABIE53_003113	0.43	+0.8
3,525,668	+		ABIE53_003113	0.43	-2.0
3,525,668	+		ABIE53_003113	0.43	+2.8
3,525,668	+		ABIE53_003113	0.43	+2.1
3,525,668	+		ABIE53_003113	0.43	-3.4
3,525,668	+		ABIE53_003113	0.43	+0.4
3,525,668	+		ABIE53_003113	0.43	-0.6
3,525,668	+		ABIE53_003113	0.43	-1.3
3,525,668	+		ABIE53_003113	0.43	+0.4
3,525,668	+		ABIE53_003113	0.43	-1.8
3,525,669	-		ABIE53_003113	0.44	+0.4
3,525,669	-		ABIE53_003113	0.44	+0.5
3,525,669	-		ABIE53_003113	0.44	-0.2
3,525,669	-		ABIE53_003113	0.44	+2.2
3,525,669	-		ABIE53_003113	0.44	-1.1
3,525,669	-		ABIE53_003113	0.44	+0.8
3,525,669	-		ABIE53_003113	0.44	-0.6
3,525,669	-		ABIE53_003113	0.44	-2.1
3,525,669	-		ABIE53_003113	0.44	+0.6
3,525,669	-		ABIE53_003113	0.44	-1.5
3,525,669	-		ABIE53_003113	0.44	+0.3
3,525,669	-		ABIE53_003113	0.44	+0.2
3,525,669	-		ABIE53_003113	0.44	+0.4
3,525,669	-		ABIE53_003113	0.44	-0.2
3,525,669	-		ABIE53_003113	0.44	+0.1
3,525,712	+		ABIE53_003113	0.49	+0.4
3,525,712	+		ABIE53_003113	0.49	+1.2
3,525,712	+		ABIE53_003113	0.49	-1.5
3,525,712	+		ABIE53_003113	0.49	-0.5
3,525,713	-		ABIE53_003113	0.49	-1.5
3,525,713	-		ABIE53_003113	0.49	+0.7
3,525,713	-		ABIE53_003113	0.49	-0.8
3,525,776	+		ABIE53_003113	0.57	-0.8
3,525,776	+		ABIE53_003113	0.57	+0.4
3,525,806	+		ABIE53_003113	0.61	+0.7
3,525,806	+		ABIE53_003113	0.61	-1.5
3,525,807	-		ABIE53_003113	0.61	-0.8
3,525,839	+		ABIE53_003113	0.65	-0.6
3,525,840	-		ABIE53_003113	0.65	+0.1
3,526,112	+				-1.8
3,526,112	+				+0.0
3,526,112	+				-0.2
3,526,112	+				-0.0
3,526,112	+				-1.0
3,526,113	-				+0.7
3,526,113	-				+1.4
3,526,113	-				-0.1
3,526,113	-				-0.6
3,526,159	+				-1.0
3,526,160	-				+0.2
3,526,160	-				+0.4
3,526,160	-				+1.4
3,526,160	-				-2.3
3,526,160	-				-1.8
3,526,322	+				+0.4
3,526,322	+				-1.1
3,526,323	-				+0.4
3,526,323	-				-0.1
3,526,323	-				-1.6
3,526,323	-				-1.6
3,526,323	-				-0.6
3,526,449	+				+2.1
3,526,449	+				+0.6
3,526,450	-				-0.1
3,526,450	-				+0.6
3,526,450	-				-0.2
3,526,450	-				-3.2
3,526,450	-				+2.9
3,526,482	+				+1.9
3,526,483	-				-2.6
3,526,483	-				-0.2
3,526,483	-				-0.8
3,526,483	-				-1.0
3,526,515	-				+9.5
3,526,515	-				+9.4
3,526,515	-				+7.8
3,526,516	+				+5.8
3,526,516	+				+7.1
3,526,516	+				+9.7
3,526,516	+				+8.3
3,526,516	+				+10.1
3,526,516	+				+7.4
3,526,517	-				+7.3
3,526,517	-				+5.1
3,526,517	-				+7.8
3,526,517	-				+7.4
3,526,517	-				+9.3
3,526,517	-				+7.9
3,526,517	-				+1.9
3,526,652	+		ABIE53_003114	0.17	+9.6
3,526,652	+		ABIE53_003114	0.17	+6.9
3,526,652	+		ABIE53_003114	0.17	+9.4
3,526,652	+		ABIE53_003114	0.17	+6.2
3,526,653	-		ABIE53_003114	0.17	+6.7
3,526,653	-		ABIE53_003114	0.17	+5.9
3,526,653	-		ABIE53_003114	0.17	+7.3
3,526,757	+		ABIE53_003114	0.24	+11.0
3,526,757	+		ABIE53_003114	0.24	+5.0
3,526,757	+		ABIE53_003114	0.24	+2.9
3,526,757	+		ABIE53_003114	0.24	+3.9
3,526,757	+		ABIE53_003114	0.24	+8.0
3,526,757	+		ABIE53_003114	0.24	+8.0
3,526,757	+		ABIE53_003114	0.24	+4.5
3,526,757	+		ABIE53_003114	0.24	+8.0
3,526,757	+		ABIE53_003114	0.24	+8.3
3,526,757	+		ABIE53_003114	0.24	+2.5
3,526,757	+		ABIE53_003114	0.24	+9.8
3,526,757	+		ABIE53_003114	0.24	+6.7
3,526,757	+		ABIE53_003114	0.24	+1.4
3,526,757	+		ABIE53_003114	0.24	+7.6
3,526,757	+		ABIE53_003114	0.24	+9.7
3,526,757	+		ABIE53_003114	0.24	+8.3
3,526,757	+		ABIE53_003114	0.24	+6.9
3,526,757	+		ABIE53_003114	0.24	+7.7
3,526,758	-		ABIE53_003114	0.24	+7.5
3,526,758	-		ABIE53_003114	0.24	+8.1
3,526,758	-		ABIE53_003114	0.24	+7.3
3,526,758	-		ABIE53_003114	0.24	+4.6
3,526,758	-		ABIE53_003114	0.24	+7.6
3,526,758	-		ABIE53_003114	0.24	+8.4
3,526,758	-		ABIE53_003114	0.24	+5.9
3,526,758	-		ABIE53_003114	0.24	+7.9
3,526,758	-		ABIE53_003114	0.24	+7.8
3,526,758	-		ABIE53_003114	0.24	+7.1
3,526,758	-		ABIE53_003114	0.24	+8.1
3,526,758	-		ABIE53_003114	0.24	+8.2
3,526,758	-		ABIE53_003114	0.24	+7.4
3,526,758	-		ABIE53_003114	0.24	+1.4
3,526,758	-		ABIE53_003114	0.24	+4.9
3,526,857	+		ABIE53_003114	0.31	+8.3
3,526,857	+		ABIE53_003114	0.31	+7.4
3,526,857	+		ABIE53_003114	0.31	+6.0
3,526,857	+		ABIE53_003114	0.31	+7.4
3,526,858	-		ABIE53_003114	0.31	+8.7
3,526,858	-		ABIE53_003114	0.31	+2.9
3,526,916	+		ABIE53_003114	0.36	+8.3
3,526,917	-		ABIE53_003114	0.36	+8.4
3,527,007	+		ABIE53_003114	0.42	+6.8
3,527,007	+		ABIE53_003114	0.42	+6.3
3,527,008	-		ABIE53_003114	0.42	+9.7
3,527,008	-		ABIE53_003114	0.42	+8.6
3,527,182	+		ABIE53_003114	0.55	+6.8
3,527,182	+		ABIE53_003114	0.55	+7.7
3,527,182	+		ABIE53_003114	0.55	+8.5
3,527,182	+		ABIE53_003114	0.55	+6.8
3,527,182	+		ABIE53_003114	0.55	+4.8
3,527,313	+		ABIE53_003114	0.64	+6.3
3,527,313	+		ABIE53_003114	0.64	+6.9
3,527,313	+		ABIE53_003114	0.64	+5.8
3,527,313	+		ABIE53_003114	0.64	+3.9
3,527,313	+		ABIE53_003114	0.64	+7.9
3,527,453	+		ABIE53_003114	0.74	+0.4
3,527,453	+		ABIE53_003114	0.74	+5.8
3,527,453	+		ABIE53_003114	0.74	+4.5
3,527,453	+		ABIE53_003114	0.74	+7.5
3,527,453	+		ABIE53_003114	0.74	+8.8
3,527,453	+		ABIE53_003114	0.74	+9.0
3,527,454	-		ABIE53_003114	0.74	+5.6
3,527,454	-		ABIE53_003114	0.74	+3.9
3,527,492	+		ABIE53_003114	0.77	+7.5
3,527,493	-		ABIE53_003114	0.77	+6.5
3,527,493	-		ABIE53_003114	0.77	+5.6
3,527,507	+		ABIE53_003114	0.78	+7.4
3,527,507	+		ABIE53_003114	0.78	+7.4
3,527,507	+		ABIE53_003114	0.78	+5.1
3,527,508	-		ABIE53_003114	0.78	+6.8
3,527,508	-		ABIE53_003114	0.78	+9.3
3,527,508	-		ABIE53_003114	0.78	+7.8
3,527,508	-		ABIE53_003114	0.78	+8.0
3,527,508	-		ABIE53_003114	0.78	+8.0
3,527,519	+		ABIE53_003114	0.79	+8.2
3,527,519	+		ABIE53_003114	0.79	+4.1
3,527,519	+		ABIE53_003114	0.79	+4.7
3,527,519	+		ABIE53_003114	0.79	+6.7
3,527,519	+		ABIE53_003114	0.79	+7.0
3,527,519	+		ABIE53_003114	0.79	+2.4
3,527,520	-		ABIE53_003114	0.79	+8.9
3,527,520	-		ABIE53_003114	0.79	+8.4
3,527,786	+				+4.9
3,527,786	+				+3.1
3,527,786	+				+4.9
3,527,786	+				+7.6
3,527,786	+				+8.6
3,527,786	+				+7.8
3,527,786	+				+6.7
3,527,787	-				+8.0
3,527,787	-				+6.8
3,527,815	+				+5.3
3,527,815	+				+6.9
3,527,815	+				+6.0
3,527,815	+				+6.2
3,527,816	-				+2.1
3,527,816	-				+6.0
3,527,816	-				+0.1
3,527,816	-				+5.2
3,527,816	-				+7.4
3,527,842	+				+4.9
3,527,842	+				+1.4
3,528,023	+				+2.1
3,528,023	+				+4.9
3,528,023	+				+6.8
3,528,023	+				+7.1
3,528,023	+				+6.7
3,528,023	+				+3.5
3,528,023	+				+7.4
3,528,023	+				+5.2
3,528,023	+				+5.5
3,528,023	+				+3.7
3,528,024	-				+0.4
3,528,024	-				-0.4
3,528,024	-				-0.8
3,528,024	-				-3.1
3,528,024	-				-1.0
3,528,024	-				-2.9
3,528,024	-				-2.2
3,528,024	-				+0.3
3,528,024	-				-1.8
3,528,024	-				-0.2
3,528,024	-				-1.0
3,528,024	-				-1.2
3,528,024	-				-0.3
3,528,024	-				-0.2
3,528,024	-				-1.0
3,528,026	+				+5.8
3,528,026	+				+9.4
3,528,026	+				+7.8
3,528,026	+				+7.6
3,528,026	+				-0.6
3,528,026	+				+7.4
3,528,026	+				+6.7
3,528,026	+				+7.9
3,528,026	+				+7.2
3,528,026	+				+4.0
3,528,026	+				+7.1
3,528,026	+				+7.3
3,528,026	+				+2.1
3,528,027	-				-1.1
3,528,027	-				+0.2
3,528,027	-				-2.6
3,528,027	-				-1.8
3,528,027	-				-1.0
3,528,027	-				-0.8
3,528,027	-				+0.1
3,528,027	-				-0.6
3,528,027	-				-2.2
3,528,027	-				+0.4
3,528,027	-				-1.1
3,528,027	-				-1.9
3,528,028	+				+3.6
3,528,028	+				+4.6
3,528,028	+				-0.6
3,528,028	+				+3.2
3,528,028	+				+7.2
3,528,028	+				+3.2
3,528,028	+				-0.4
3,528,028	+				+4.3
3,528,029	-				-3.2
3,528,052	+				+3.4
3,528,053	-				-1.4
3,528,053	-				-0.8
3,528,101	+				+2.4
3,528,105	+				+1.2
3,528,105	+				+2.3
3,528,105	+				+2.4
3,528,105	+				-0.2
3,528,105	+				+2.6
3,528,105	+				+0.8
3,528,105	+				-0.9
3,528,105	+				+1.9
3,528,106	-				-3.4
3,528,106	-				+1.0
3,528,106	-				-2.1
3,528,106	-				-1.0
3,528,106	-				+2.4
3,528,106	-				+1.0
3,528,106	-				-2.6
3,528,106	-				-3.7
3,528,106	-				-2.3
3,528,106	-				+0.4
3,528,109	+				-0.4
3,528,110	-				-1.4
3,528,110	-				-1.0
3,528,118	+				+2.5
3,528,152	+				+0.6
3,528,152	+				+3.2
3,528,152	+				-1.4
3,528,152	+				+0.8
3,528,152	+				+0.6
3,528,152	+				+2.2
3,528,152	+				-0.2
3,528,152	+				+2.4
3,528,152	+				+0.9
3,528,152	+				+2.9
3,528,152	+				+1.7
3,528,152	+				+1.4
3,528,152	+				+0.4
3,528,152	+				-0.6
3,528,152	+				+1.4
3,528,152	+				+2.1
3,528,153	-				+0.8
3,528,153	-				-1.0
3,528,153	-				-1.0
3,528,153	-				-3.3
3,528,153	-				-2.1
3,528,156	+				+4.0
3,528,156	+				+2.5
3,528,156	+				+3.7
3,528,156	+				+1.0
3,528,156	+				+2.7
3,528,157	-				-0.6
3,528,157	-				-1.8
3,528,157	-				-2.0
3,528,168	+				+2.7
3,528,169	-				-0.6
3,528,169	-				-2.5
3,528,194	+				-2.2
3,528,195	-				+0.4
3,528,195	-				-2.2
3,528,197	+				+5.0
3,528,252	-				-0.1
3,528,252	-				+0.4
3,528,323	-				+0.5
3,528,347	+				-0.5
3,528,347	+				+1.4
3,528,348	-				+2.4
3,528,348	-				+0.4
3,528,348	-				+0.4
3,528,348	-				-3.6
3,528,348	-				+1.0
3,528,348	-				-0.6
3,528,348	-				+0.9
3,528,348	-				-0.8
3,528,400	+				+0.8
3,528,400	+				+1.1
3,528,400	+				+0.5
3,528,400	+				+3.1
3,528,400	+				+1.4
3,528,401	-				-0.4
3,528,401	-				-0.6
3,528,563	+				-0.3
3,528,563	+				-0.2
3,528,563	+				+0.7
3,528,563	+				-2.1
3,528,564	-				-2.4
3,528,564	-				-1.1
3,528,564	-				+0.1
3,528,564	-				+0.8
3,528,564	-				-1.2
3,528,564	-				-2.2
3,528,578	+				+0.7
3,528,578	+				+1.5
3,528,578	+				-0.8
3,528,578	+				+2.2