Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_001819

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
2,056,428	+		ABIE53_001817	0.26	-0.5
2,056,428	+		ABIE53_001817	0.26	+1.5
2,056,428	+		ABIE53_001817	0.26	-0.3
2,056,428	+		ABIE53_001817	0.26	-0.5
2,056,428	+		ABIE53_001817	0.26	+0.0
2,056,429	-		ABIE53_001817	0.26	+0.5
2,056,597	+				+2.1
2,056,601	+				-0.2
2,056,601	+				-0.1
2,056,601	+				-1.5
2,056,601	+				+1.7
2,056,601	+				+0.5
2,056,601	+				+1.0
2,056,601	+				+1.1
2,056,602	-				-1.4
2,056,602	-				-0.1
2,056,602	-				+1.7
2,056,602	-				+0.1
2,056,602	-				-0.2
2,056,602	-				-2.1
2,056,602	-				-0.5
2,056,684	+				+1.5
2,056,684	+				-0.8
2,056,684	+				+0.1
2,056,684	+				+0.1
2,056,684	+				-2.9
2,056,684	+				+0.3
2,056,685	-				+1.9
2,056,685	-				-0.8
2,056,685	-				+0.1
2,056,685	-				+1.4
2,056,685	-				-0.3
2,056,689	+				+0.4
2,056,726	-				+1.5
2,057,009	+		ABIE53_001818	0.64	-1.4
2,057,009	+		ABIE53_001818	0.64	+3.1
2,057,038	+		ABIE53_001818	0.76	+1.9
2,057,039	-		ABIE53_001818	0.76	+0.8
2,057,039	-		ABIE53_001818	0.76	+0.5
2,057,100	+				-1.6
2,057,100	+				+0.0
2,057,100	+				+0.5
2,057,101	-				-1.1
2,057,101	-				+1.5
2,057,101	-				-0.1
2,057,101	-				-0.8
2,057,101	-				-0.1
2,057,101	-				-0.2
2,057,129	+				-0.8
2,057,130	-				+1.0
2,057,130	-				-0.7
2,057,130	-				+1.5
2,057,130	-				-1.0
2,057,130	-				-0.8
2,057,130	-				-0.8
2,057,137	+				-0.8
2,057,137	+				-0.7
2,057,163	-				+0.3
2,057,163	-				+0.7
2,057,216	-				+0.7
2,057,216	-				-1.1
2,057,250	+				+0.8
2,057,250	+				+1.5
2,057,250	+				-0.8
2,057,250	+				-0.1
2,057,250	+				+0.5
2,057,250	+				+1.4
2,057,251	-				+2.0
2,057,251	-				-2.6
2,057,328	+				+0.0
2,057,374	+				-1.1
2,057,374	+				-2.5
2,057,376	+				-0.5
2,057,376	+				-2.7
2,057,376	+				-0.1
2,057,376	+				-0.8
2,057,376	+				-0.5
2,057,376	+				-1.8
2,057,376	+				-0.5
2,057,376	+				-0.1
2,057,376	+				-0.8
2,057,376	+				+1.7
2,057,376	+				-0.5
2,057,376	+				-0.9
2,057,376	+				-0.8
2,057,377	-				+0.1
2,057,377	-				-1.1
2,057,377	-				-1.7
2,057,377	-				+1.5
2,057,377	-				+0.1
2,057,377	-				-0.8
2,057,377	-				+0.3
2,057,377	-				-0.5
2,057,385	+				-0.1
2,057,385	+				-1.3
2,057,385	+				+0.1
2,057,385	+				+0.5
2,057,386	-				-0.0
2,057,386	-				-0.8
2,057,386	-				+4.3
2,057,386	-				-0.1
2,057,386	-				+0.5
2,057,561	+		ABIE53_001819	0.29	-2.5
2,057,562	-		ABIE53_001819	0.30	-0.3
2,057,562	-		ABIE53_001819	0.30	-2.2
2,057,562	-		ABIE53_001819	0.30	-0.4
2,057,574	+		ABIE53_001819	0.31	+0.5
2,057,574	+		ABIE53_001819	0.31	+0.9
2,057,574	+		ABIE53_001819	0.31	+1.5
2,057,575	-		ABIE53_001819	0.31	+1.2
2,057,619	+		ABIE53_001819	0.38	-0.2
2,057,619	+		ABIE53_001819	0.38	+0.9
2,057,619	+		ABIE53_001819	0.38	-0.7
2,057,619	+		ABIE53_001819	0.38	+0.5
2,057,619	+		ABIE53_001819	0.38	-0.3
2,057,620	-		ABIE53_001819	0.38	-0.8
2,057,620	-		ABIE53_001819	0.38	-1.1
2,057,620	-		ABIE53_001819	0.38	-0.8
2,057,620	-		ABIE53_001819	0.38	+0.8
2,057,620	-		ABIE53_001819	0.38	-1.0
2,057,683	-		ABIE53_001819	0.47	+0.1
2,057,691	+		ABIE53_001819	0.48	+0.8
2,057,691	+		ABIE53_001819	0.48	+0.5
2,057,691	+		ABIE53_001819	0.48	-0.3
2,057,691	+		ABIE53_001819	0.48	-1.3
2,057,691	+		ABIE53_001819	0.48	+1.0
2,057,691	+		ABIE53_001819	0.48	+1.5
2,057,691	+		ABIE53_001819	0.48	-1.1
2,057,691	+		ABIE53_001819	0.48	+1.9
2,057,691	+		ABIE53_001819	0.48	+0.3
2,057,691	+		ABIE53_001819	0.48	+0.1
2,057,691	+		ABIE53_001819	0.48	+0.2
2,057,691	+		ABIE53_001819	0.48	+3.1
2,057,691	+		ABIE53_001819	0.48	-1.9
2,057,691	+		ABIE53_001819	0.48	-0.1
2,057,691	+		ABIE53_001819	0.48	+0.1
2,057,692	-		ABIE53_001819	0.48	-0.6
2,057,692	-		ABIE53_001819	0.48	+0.0
2,057,692	-		ABIE53_001819	0.48	-0.5
2,057,692	-		ABIE53_001819	0.48	+1.3
2,057,692	-		ABIE53_001819	0.48	-1.3
2,057,692	-		ABIE53_001819	0.48	-1.1
2,057,692	-		ABIE53_001819	0.48	+0.4
2,057,692	-		ABIE53_001819	0.48	+1.5
2,057,692	-		ABIE53_001819	0.48	-3.3
2,057,850	+		ABIE53_001819	0.71	-1.3
2,057,850	+		ABIE53_001819	0.71	-0.5
2,057,850	+		ABIE53_001819	0.71	+0.4
2,057,850	+		ABIE53_001819	0.71	+1.5
2,057,851	-		ABIE53_001819	0.71	+1.5
2,057,851	-		ABIE53_001819	0.71	-0.5
2,057,851	-		ABIE53_001819	0.71	-2.6
2,057,851	-		ABIE53_001819	0.71	-0.6
2,058,024	+				-1.1
2,058,026	+				-0.5
2,058,026	+				-1.1
2,058,026	+				-1.5
2,058,026	+				+0.1
2,058,026	+				-0.3
2,058,026	+				+0.5
2,058,026	+				+1.3
2,058,026	+				+0.7
2,058,026	+				+1.5
2,058,026	+				-1.1
2,058,026	+				+1.1
2,058,027	-				-0.8
2,058,027	-				-0.3
2,058,027	-				-1.1
2,058,027	-				-0.5
2,058,027	-				-0.1
2,058,028	+				+0.2
2,058,028	+				-0.8
2,058,029	-				+1.5
2,058,056	+				-0.1
2,058,056	+				-0.8
2,058,057	-				-0.1
2,058,057	-				-1.3
2,058,065	+				-1.3
2,058,066	-				-1.3
2,058,076	+				-0.5
2,058,076	+				+0.7
2,058,076	+				-0.9
2,058,077	-				+0.8
2,058,077	-				+0.9
2,058,077	-				+0.0
2,058,077	-				-1.8
2,058,090	+				+1.5
2,058,090	+				-0.6
2,058,090	+				+0.2
2,058,090	+				+0.7
2,058,090	+				+0.1
2,058,090	+				-1.7
2,058,090	+				-0.7
2,058,090	+				+1.5
2,058,090	+				-0.8
2,058,090	+				-1.8
2,058,090	+				+0.5
2,058,090	+				-1.9
2,058,090	+				-0.8
2,058,090	+				-1.1
2,058,090	+				-0.3
2,058,091	-				-1.3
2,058,091	-				+2.1
2,058,091	-				-0.1
2,058,091	-				-0.1
2,058,091	-				-0.8
2,058,091	-				-0.6
2,058,091	-				+1.0
2,058,091	-				-0.8
2,058,091	-				-1.5
2,058,091	-				+0.5
2,058,091	-				-1.8
2,058,091	-				-0.3
2,058,091	-				-1.0
2,058,091	-				+0.0
2,058,091	-				-2.1
2,058,105	+				-0.8
2,058,106	-				+1.5
2,058,106	-				+1.5
2,058,106	-				-0.3
2,058,154	+				-1.3
2,058,155	-				+2.9
2,058,155	-				+0.3
2,058,158	+				-0.6
2,058,159	-				-0.4
2,058,159	-				+0.5
2,058,159	-				-0.5
2,058,166	+				-1.9
2,058,167	-				+2.5
2,058,199	+				-0.5
2,058,200	-				-0.2
2,058,200	-				-1.1
2,058,200	-				-0.1
2,058,200	-				+0.8
2,058,200	-				-2.1
2,058,232	-				+0.6
2,058,239	-				-0.1
2,058,304	+				-1.3
2,058,304	+				+0.5
2,058,304	+				-0.1
2,058,304	+				+1.5
2,058,305	-				+3.1
2,058,305	-				-0.6
2,058,305	-				-0.5
2,058,305	-				-0.5
2,058,305	-				-2.7
2,058,305	-				+0.5
2,058,305	-				+1.5
2,058,305	-				+0.4
2,058,305	-				-2.3
2,058,305	-				-1.1
2,058,326	+				-1.1
2,058,327	-				-1.0
2,058,350	+				-0.8
2,058,350	+				+1.0
2,058,351	-				+1.8
2,058,351	-				-1.6
2,058,351	-				-0.6
2,058,351	-				+0.6
2,058,351	-				+0.1
2,058,351	-				+1.5
2,058,351	-				+0.8
2,058,366	+				-0.8
2,058,366	+				+2.7
2,058,367	-				-2.5
2,058,367	-				-1.3
2,058,367	-				+1.5
2,058,393	-		ABIE53_001820	0.16	+0.5
2,058,434	+		ABIE53_001820	0.29	+0.5
2,058,435	-		ABIE53_001820	0.29	-0.7
2,058,475	+		ABIE53_001820	0.41	+1.5
2,058,475	+		ABIE53_001820	0.41	+0.5
2,058,476	-		ABIE53_001820	0.42	-0.1
2,058,476	-		ABIE53_001820	0.42	-0.5
2,058,476	-		ABIE53_001820	0.42	+0.9
2,058,476	-		ABIE53_001820	0.42	-0.3
2,058,476	-		ABIE53_001820	0.42	+3.1
2,058,476	-		ABIE53_001820	0.42	-0.1
2,058,608	+		ABIE53_001820	0.82	+1.6
2,058,608	+		ABIE53_001820	0.82	+2.3
2,058,608	+		ABIE53_001820	0.82	+0.2
2,058,608	+		ABIE53_001820	0.82	-1.3
2,058,608	+		ABIE53_001820	0.82	+2.8
2,058,609	-		ABIE53_001820	0.83	+0.5
2,058,609	-		ABIE53_001820	0.83	+3.3
2,058,662	+				-0.1
2,058,662	+				-0.3
2,058,662	+				-0.8
2,058,662	+				+1.2
2,058,663	-				+0.7
2,058,663	-				-0.1
2,058,804	+				+1.2
2,058,804	+				-1.5
2,058,821	+				-1.5
2,058,821	+				+0.6
2,058,821	+				-2.6
2,058,822	-				+0.7
2,058,822	-				+0.5
2,058,822	-				-1.3
2,058,824	+				-1.6
2,058,824	+				+1.5
2,058,825	-				+0.5
2,058,825	-				+1.0
2,058,840	+				-1.1
2,058,840	+				-0.1
2,058,840	+				+0.8
2,058,840	+				-0.5
2,058,840	+				-1.6
2,058,841	-				+1.3
2,058,841	-				+0.6
2,058,841	-				-0.1
2,058,849	+				-0.9
2,058,849	+				-1.3
2,058,849	+				+0.5
2,058,849	+				-0.8
2,058,850	-				+3.3
2,058,862	+				-1.6