Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS25560

Experiment: Inosine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS25555 and BWI76_RS25560 are separated by 138 nucleotidesBWI76_RS25560 and BWI76_RS25565 are separated by 328 nucleotides BWI76_RS25555: BWI76_RS25555 - 50S ribosomal protein L11 methyltransferase, at 5,310,698 to 5,311,579 _RS25555 BWI76_RS25560: BWI76_RS25560 - carbonic anhydrase, at 5,311,718 to 5,312,458 _RS25560 BWI76_RS25565: BWI76_RS25565 - tRNA dihydrouridine synthase DusB, at 5,312,787 to 5,313,752 _RS25565 Position (kb) 5311 5312 5313Strain fitness (log2 ratio) -2 -1 0 1at 5311.003 kb on + strand, within BWI76_RS25555at 5311.285 kb on - strand, within BWI76_RS25555at 5311.339 kb on + strand, within BWI76_RS25555at 5311.469 kb on + strand, within BWI76_RS25555at 5311.541 kb on + strandat 5311.669 kb on + strandat 5311.669 kb on + strandat 5311.670 kb on - strandat 5311.677 kb on - strandat 5311.706 kb on - strandat 5311.751 kb on + strandat 5311.821 kb on + strand, within BWI76_RS25560at 5311.843 kb on + strand, within BWI76_RS25560at 5311.958 kb on + strand, within BWI76_RS25560at 5312.114 kb on - strand, within BWI76_RS25560at 5312.162 kb on - strand, within BWI76_RS25560at 5312.205 kb on + strand, within BWI76_RS25560at 5312.273 kb on + strand, within BWI76_RS25560at 5312.308 kb on - strand, within BWI76_RS25560at 5312.322 kb on - strand, within BWI76_RS25560at 5312.327 kb on - strand, within BWI76_RS25560at 5312.362 kb on - strand, within BWI76_RS25560at 5312.372 kb on - strand, within BWI76_RS25560at 5312.718 kb on + strandat 5313.230 kb on + strand, within BWI76_RS25565

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Inosine (C)
remove
5,311,003 + BWI76_RS25555 0.35 -1.9
5,311,285 - BWI76_RS25555 0.67 +0.2
5,311,339 + BWI76_RS25555 0.73 +0.3
5,311,469 + BWI76_RS25555 0.87 -0.4
5,311,541 + -0.0
5,311,669 + +0.6
5,311,669 + -0.9
5,311,670 - +1.1
5,311,677 - +0.4
5,311,706 - -2.2
5,311,751 + -0.5
5,311,821 + BWI76_RS25560 0.14 -0.1
5,311,843 + BWI76_RS25560 0.17 +0.4
5,311,958 + BWI76_RS25560 0.32 +0.4
5,312,114 - BWI76_RS25560 0.53 +0.7
5,312,162 - BWI76_RS25560 0.60 +0.0
5,312,205 + BWI76_RS25560 0.66 +0.5
5,312,273 + BWI76_RS25560 0.75 +0.7
5,312,308 - BWI76_RS25560 0.80 -0.4
5,312,322 - BWI76_RS25560 0.82 +1.3
5,312,327 - BWI76_RS25560 0.82 +1.1
5,312,362 - BWI76_RS25560 0.87 -1.8
5,312,372 - BWI76_RS25560 0.88 +0.6
5,312,718 + +1.6
5,313,230 + BWI76_RS25565 0.46 +1.2

Or see this region's nucleotide sequence