Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS23675

Experiment: Inosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS23670 and BWI76_RS23675 are separated by 109 nucleotidesBWI76_RS23675 and BWI76_RS23680 are separated by 11 nucleotidesBWI76_RS23680 and BWI76_RS23685 are separated by 36 nucleotides BWI76_RS23670: BWI76_RS23670 - alkaline phosphatase, at 4,940,581 to 4,941,381 _RS23670 BWI76_RS23675: BWI76_RS23675 - allulose-6-phosphate 3-epimerase, at 4,941,491 to 4,942,180 _RS23675 BWI76_RS23680: BWI76_RS23680 - ribokinase, at 4,942,192 to 4,943,133 _RS23680 BWI76_RS23685: BWI76_RS23685 - MFS transporter, at 4,943,170 to 4,944,504 _RS23685 Position (kb) 4941 4942 4943Strain fitness (log2 ratio) -3 -2 -1 0 1at 4940.566 kb on + strandat 4940.566 kb on + strandat 4940.571 kb on + strandat 4940.576 kb on + strandat 4940.579 kb on - strandat 4940.623 kb on + strandat 4941.022 kb on - strand, within BWI76_RS23670at 4941.207 kb on - strand, within BWI76_RS23670at 4941.266 kb on + strand, within BWI76_RS23670at 4941.297 kb on + strand, within BWI76_RS23670at 4941.343 kb on + strandat 4941.644 kb on - strand, within BWI76_RS23675at 4941.832 kb on + strand, within BWI76_RS23675at 4941.851 kb on + strand, within BWI76_RS23675at 4941.860 kb on + strand, within BWI76_RS23675at 4941.870 kb on + strand, within BWI76_RS23675at 4941.878 kb on - strand, within BWI76_RS23675at 4941.973 kb on + strand, within BWI76_RS23675at 4942.073 kb on - strand, within BWI76_RS23675at 4942.074 kb on - strand, within BWI76_RS23675at 4942.123 kb on - strandat 4942.162 kb on - strandat 4942.239 kb on + strandat 4942.428 kb on - strand, within BWI76_RS23680at 4942.663 kb on + strand, within BWI76_RS23680at 4942.717 kb on + strand, within BWI76_RS23680at 4942.927 kb on - strand, within BWI76_RS23680at 4942.927 kb on - strand, within BWI76_RS23680at 4942.996 kb on + strand, within BWI76_RS23680at 4943.142 kb on - strandat 4943.159 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine (C)
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4,940,566 + -0.3
4,940,566 + -1.1
4,940,571 + -0.6
4,940,576 + +0.0
4,940,579 - +0.3
4,940,623 + +0.8
4,941,022 - BWI76_RS23670 0.55 -0.6
4,941,207 - BWI76_RS23670 0.78 -0.4
4,941,266 + BWI76_RS23670 0.86 +0.0
4,941,297 + BWI76_RS23670 0.89 -0.4
4,941,343 + +1.6
4,941,644 - BWI76_RS23675 0.22 -0.9
4,941,832 + BWI76_RS23675 0.49 -1.1
4,941,851 + BWI76_RS23675 0.52 +0.6
4,941,860 + BWI76_RS23675 0.53 -0.3
4,941,870 + BWI76_RS23675 0.55 -1.0
4,941,878 - BWI76_RS23675 0.56 -0.6
4,941,973 + BWI76_RS23675 0.70 -0.3
4,942,073 - BWI76_RS23675 0.84 -3.0
4,942,074 - BWI76_RS23675 0.84 -1.1
4,942,123 - -0.4
4,942,162 - -0.3
4,942,239 + -1.2
4,942,428 - BWI76_RS23680 0.25 +0.0
4,942,663 + BWI76_RS23680 0.50 -0.3
4,942,717 + BWI76_RS23680 0.56 +0.2
4,942,927 - BWI76_RS23680 0.78 -0.4
4,942,927 - BWI76_RS23680 0.78 +0.0
4,942,996 + BWI76_RS23680 0.85 +0.5
4,943,142 - +0.4
4,943,159 - +0.7

Or see this region's nucleotide sequence