Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS21935

Experiment: Inosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS21930 and BWI76_RS21935 overlap by 4 nucleotidesBWI76_RS21935 and BWI76_RS21940 are separated by 64 nucleotidesBWI76_RS21940 and BWI76_RS21945 are separated by 144 nucleotides BWI76_RS21930: BWI76_RS21930 - LysR family transcriptional regulator, at 4,581,410 to 4,582,312 _RS21930 BWI76_RS21935: BWI76_RS21935 - MFS transporter, at 4,582,309 to 4,583,502 _RS21935 BWI76_RS21940: BWI76_RS21940 - SDR family oxidoreductase, at 4,583,567 to 4,584,343 _RS21940 BWI76_RS21945: BWI76_RS21945 - LysR family transcriptional regulator, at 4,584,488 to 4,585,408 _RS21945 Position (kb) 4582 4583 4584Strain fitness (log2 ratio) -2 -1 0 1 2at 4581.404 kb on - strandat 4581.483 kb on - strandat 4581.506 kb on - strand, within BWI76_RS21930at 4581.723 kb on + strand, within BWI76_RS21930at 4581.811 kb on + strandat 4581.947 kb on + strand, within BWI76_RS21930at 4582.053 kb on + strand, within BWI76_RS21930at 4582.101 kb on + strand, within BWI76_RS21930at 4582.148 kb on + strand, within BWI76_RS21930at 4582.175 kb on - strand, within BWI76_RS21930at 4582.253 kb on + strandat 4582.280 kb on - strandat 4582.771 kb on - strand, within BWI76_RS21935at 4582.831 kb on + strand, within BWI76_RS21935at 4582.831 kb on + strand, within BWI76_RS21935at 4582.986 kb on - strand, within BWI76_RS21935at 4583.084 kb on + strand, within BWI76_RS21935at 4583.227 kb on + strand, within BWI76_RS21935at 4583.323 kb on - strand, within BWI76_RS21935at 4583.323 kb on - strand, within BWI76_RS21935at 4583.652 kb on + strandat 4583.857 kb on - strand, within BWI76_RS21940at 4583.974 kb on - strand, within BWI76_RS21940at 4584.116 kb on - strand, within BWI76_RS21940at 4584.350 kb on + strandat 4584.376 kb on + strandat 4584.386 kb on + strandat 4584.389 kb on - strandat 4584.394 kb on - strandat 4584.394 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine (C)
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4,581,404 - +0.9
4,581,483 - -0.8
4,581,506 - BWI76_RS21930 0.11 -0.5
4,581,723 + BWI76_RS21930 0.35 +1.1
4,581,811 + +1.7
4,581,947 + BWI76_RS21930 0.59 +0.3
4,582,053 + BWI76_RS21930 0.71 -1.1
4,582,101 + BWI76_RS21930 0.77 +0.1
4,582,148 + BWI76_RS21930 0.82 +0.0
4,582,175 - BWI76_RS21930 0.85 +0.2
4,582,253 + +0.7
4,582,280 - -2.4
4,582,771 - BWI76_RS21935 0.39 +0.3
4,582,831 + BWI76_RS21935 0.44 +1.2
4,582,831 + BWI76_RS21935 0.44 +2.6
4,582,986 - BWI76_RS21935 0.57 +1.1
4,583,084 + BWI76_RS21935 0.65 -0.4
4,583,227 + BWI76_RS21935 0.77 +1.1
4,583,323 - BWI76_RS21935 0.85 -0.0
4,583,323 - BWI76_RS21935 0.85 +0.2
4,583,652 + +1.7
4,583,857 - BWI76_RS21940 0.37 +0.4
4,583,974 - BWI76_RS21940 0.52 -1.4
4,584,116 - BWI76_RS21940 0.71 -0.3
4,584,350 + +0.8
4,584,376 + -0.9
4,584,386 + -1.9
4,584,389 - -1.2
4,584,394 - +0.3
4,584,394 - -0.2

Or see this region's nucleotide sequence