Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06165

Experiment: Inosine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS06160 and BWI76_RS06165 are separated by 90 nucleotidesBWI76_RS06165 and BWI76_RS06170 are separated by 46 nucleotidesBWI76_RS06170 and BWI76_RS06175 are separated by 116 nucleotides BWI76_RS06160: BWI76_RS06160 - alkaline phosphatase, at 1,294,075 to 1,295,505 _RS06160 BWI76_RS06165: BWI76_RS06165 - phosphate starvation-inducible protein PsiF, at 1,295,596 to 1,295,916 _RS06165 BWI76_RS06170: BWI76_RS06170 - pyrroline-5-carboxylate reductase, at 1,295,963 to 1,296,772 _RS06170 BWI76_RS06175: BWI76_RS06175 - DUF188 domain-containing protein, at 1,296,889 to 1,297,347 _RS06175 Position (kb) 1295 1296Strain fitness (log2 ratio) -2 -1 0 1at 1294.608 kb on + strand, within BWI76_RS06160at 1294.808 kb on + strand, within BWI76_RS06160at 1294.816 kb on - strand, within BWI76_RS06160at 1294.897 kb on - strand, within BWI76_RS06160at 1294.908 kb on + strand, within BWI76_RS06160at 1294.916 kb on - strand, within BWI76_RS06160at 1294.953 kb on + strand, within BWI76_RS06160at 1294.964 kb on + strand, within BWI76_RS06160at 1294.972 kb on - strand, within BWI76_RS06160at 1295.017 kb on - strand, within BWI76_RS06160at 1295.210 kb on + strand, within BWI76_RS06160at 1295.242 kb on - strand, within BWI76_RS06160at 1295.312 kb on + strand, within BWI76_RS06160at 1295.464 kb on + strandat 1295.477 kb on - strandat 1295.477 kb on - strandat 1295.562 kb on + strandat 1295.570 kb on - strandat 1295.594 kb on - strandat 1295.675 kb on + strand, within BWI76_RS06165at 1295.727 kb on + strand, within BWI76_RS06165at 1295.775 kb on + strand, within BWI76_RS06165at 1295.827 kb on + strand, within BWI76_RS06165at 1295.848 kb on + strand, within BWI76_RS06165

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Inosine (C)
remove
1,294,608 + BWI76_RS06160 0.37 -0.2
1,294,808 + BWI76_RS06160 0.51 -0.4
1,294,816 - BWI76_RS06160 0.52 -0.9
1,294,897 - BWI76_RS06160 0.57 +0.0
1,294,908 + BWI76_RS06160 0.58 +0.1
1,294,916 - BWI76_RS06160 0.59 +0.7
1,294,953 + BWI76_RS06160 0.61 +0.0
1,294,964 + BWI76_RS06160 0.62 +0.6
1,294,972 - BWI76_RS06160 0.63 +1.7
1,295,017 - BWI76_RS06160 0.66 -1.0
1,295,210 + BWI76_RS06160 0.79 +0.0
1,295,242 - BWI76_RS06160 0.82 -0.2
1,295,312 + BWI76_RS06160 0.86 +1.1
1,295,464 + -0.3
1,295,477 - -0.7
1,295,477 - +0.4
1,295,562 + +0.9
1,295,570 - -1.9
1,295,594 - +0.8
1,295,675 + BWI76_RS06165 0.25 -0.5
1,295,727 + BWI76_RS06165 0.41 -1.1
1,295,775 + BWI76_RS06165 0.56 +0.7
1,295,827 + BWI76_RS06165 0.72 -1.9
1,295,848 + BWI76_RS06165 0.79 -1.2

Or see this region's nucleotide sequence