Experiment: D-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00415 and AO353_00420 overlap by 1 nucleotides AO353_00420 and AO353_00425 are separated by 791 nucleotides
AO353_00415: AO353_00415 - hypothetical protein, at 78,903 to 80,168
_00415
AO353_00420: AO353_00420 - hypothetical protein, at 80,168 to 81,376
_00420
AO353_00425: AO353_00425 - class C beta-lactamase, at 82,168 to 83,328
_00425
Position (kb) 80
81
82 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 79.183 kb on - strand, within AO353_00415 at 79.183 kb on - strand, within AO353_00415 at 79.242 kb on - strand, within AO353_00415 at 79.490 kb on + strand, within AO353_00415 at 79.490 kb on + strand, within AO353_00415 at 79.490 kb on + strand, within AO353_00415 at 79.490 kb on + strand, within AO353_00415 at 79.491 kb on - strand, within AO353_00415 at 79.491 kb on - strand, within AO353_00415 at 79.491 kb on - strand, within AO353_00415 at 79.534 kb on + strand, within AO353_00415 at 79.540 kb on + strand, within AO353_00415 at 79.543 kb on + strand, within AO353_00415 at 79.544 kb on - strand, within AO353_00415 at 79.544 kb on - strand, within AO353_00415 at 79.579 kb on + strand, within AO353_00415 at 79.579 kb on + strand, within AO353_00415 at 79.579 kb on + strand, within AO353_00415 at 79.579 kb on + strand, within AO353_00415 at 79.579 kb on + strand, within AO353_00415 at 79.579 kb on + strand, within AO353_00415 at 79.579 kb on + strand, within AO353_00415 at 79.580 kb on - strand, within AO353_00415 at 79.580 kb on - strand, within AO353_00415 at 79.580 kb on - strand, within AO353_00415 at 79.627 kb on + strand, within AO353_00415 at 79.628 kb on - strand, within AO353_00415 at 79.712 kb on - strand, within AO353_00415 at 79.712 kb on - strand, within AO353_00415 at 79.740 kb on + strand, within AO353_00415 at 79.741 kb on - strand, within AO353_00415 at 79.741 kb on - strand, within AO353_00415 at 79.741 kb on - strand, within AO353_00415 at 79.886 kb on + strand, within AO353_00415 at 79.927 kb on + strand, within AO353_00415 at 79.927 kb on + strand, within AO353_00415 at 79.928 kb on - strand, within AO353_00415 at 80.177 kb on + strand at 80.177 kb on + strand at 80.177 kb on + strand at 80.178 kb on - strand at 80.252 kb on - strand at 80.262 kb on + strand at 80.262 kb on + strand at 80.262 kb on + strand at 80.262 kb on + strand at 80.262 kb on + strand at 80.262 kb on + strand at 80.262 kb on + strand at 80.263 kb on - strand at 80.263 kb on - strand at 80.263 kb on - strand at 80.301 kb on + strand, within AO353_00420 at 80.301 kb on + strand, within AO353_00420 at 80.301 kb on + strand, within AO353_00420 at 80.301 kb on + strand, within AO353_00420 at 80.301 kb on + strand, within AO353_00420 at 80.301 kb on + strand, within AO353_00420 at 80.302 kb on - strand, within AO353_00420 at 80.302 kb on - strand, within AO353_00420 at 80.302 kb on - strand, within AO353_00420 at 80.302 kb on - strand, within AO353_00420 at 80.302 kb on - strand, within AO353_00420 at 80.302 kb on - strand at 80.302 kb on - strand, within AO353_00420 at 80.302 kb on - strand, within AO353_00420 at 80.302 kb on - strand, within AO353_00420 at 80.317 kb on + strand, within AO353_00420 at 80.323 kb on + strand, within AO353_00420 at 80.448 kb on + strand, within AO353_00420 at 80.448 kb on + strand, within AO353_00420 at 80.448 kb on + strand, within AO353_00420 at 80.448 kb on + strand, within AO353_00420 at 80.448 kb on + strand at 80.448 kb on + strand, within AO353_00420 at 80.448 kb on + strand, within AO353_00420 at 80.448 kb on + strand, within AO353_00420 at 80.449 kb on - strand, within AO353_00420 at 80.449 kb on - strand, within AO353_00420 at 80.449 kb on - strand, within AO353_00420 at 80.449 kb on - strand, within AO353_00420 at 80.449 kb on - strand, within AO353_00420 at 80.449 kb on - strand, within AO353_00420 at 80.449 kb on - strand, within AO353_00420 at 80.544 kb on + strand, within AO353_00420 at 80.545 kb on - strand, within AO353_00420 at 80.559 kb on + strand, within AO353_00420 at 80.560 kb on - strand, within AO353_00420 at 80.631 kb on + strand, within AO353_00420 at 80.631 kb on + strand, within AO353_00420 at 80.631 kb on + strand, within AO353_00420 at 80.631 kb on + strand, within AO353_00420 at 80.631 kb on + strand, within AO353_00420 at 80.631 kb on + strand, within AO353_00420 at 80.631 kb on + strand, within AO353_00420 at 80.632 kb on - strand, within AO353_00420 at 80.632 kb on - strand, within AO353_00420 at 80.727 kb on + strand, within AO353_00420 at 80.727 kb on + strand, within AO353_00420 at 80.727 kb on + strand, within AO353_00420 at 80.728 kb on - strand, within AO353_00420 at 80.728 kb on - strand, within AO353_00420 at 80.737 kb on + strand, within AO353_00420 at 80.737 kb on + strand, within AO353_00420 at 80.738 kb on - strand, within AO353_00420 at 80.738 kb on - strand, within AO353_00420 at 80.955 kb on + strand, within AO353_00420 at 80.955 kb on + strand, within AO353_00420 at 80.955 kb on + strand, within AO353_00420 at 80.955 kb on + strand, within AO353_00420 at 80.956 kb on - strand, within AO353_00420 at 80.968 kb on + strand, within AO353_00420 at 80.968 kb on + strand, within AO353_00420 at 80.968 kb on + strand, within AO353_00420 at 80.968 kb on + strand, within AO353_00420 at 80.969 kb on - strand, within AO353_00420 at 81.015 kb on + strand, within AO353_00420 at 81.015 kb on + strand, within AO353_00420 at 81.015 kb on + strand, within AO353_00420 at 81.016 kb on - strand, within AO353_00420 at 81.019 kb on - strand, within AO353_00420 at 81.019 kb on - strand, within AO353_00420 at 81.019 kb on - strand, within AO353_00420 at 81.056 kb on + strand, within AO353_00420 at 81.056 kb on + strand, within AO353_00420 at 81.057 kb on - strand, within AO353_00420 at 81.057 kb on - strand, within AO353_00420 at 81.301 kb on + strand at 81.301 kb on + strand at 81.302 kb on - strand at 81.302 kb on - strand at 81.302 kb on - strand at 81.305 kb on + strand at 81.305 kb on + strand at 81.306 kb on - strand at 81.381 kb on - strand at 81.381 kb on - strand at 81.403 kb on + strand at 81.403 kb on + strand at 81.403 kb on + strand at 81.404 kb on - strand at 81.412 kb on - strand at 81.413 kb on + strand at 81.413 kb on + strand at 81.413 kb on + strand at 81.413 kb on + strand at 81.413 kb on + strand at 81.414 kb on - strand at 81.446 kb on - strand at 81.468 kb on + strand at 81.468 kb on + strand at 81.469 kb on - strand at 81.585 kb on - strand at 81.672 kb on + strand at 81.745 kb on + strand at 81.745 kb on + strand at 81.746 kb on - strand at 81.830 kb on + strand at 81.946 kb on + strand at 81.969 kb on + strand at 81.970 kb on - strand at 81.970 kb on - strand at 82.018 kb on + strand at 82.043 kb on + strand at 82.044 kb on - strand at 82.046 kb on - strand at 82.170 kb on - strand at 82.280 kb on + strand at 82.280 kb on + strand at 82.280 kb on + strand at 82.281 kb on - strand at 82.281 kb on - strand at 82.281 kb on - strand at 82.281 kb on - strand at 82.281 kb on - strand at 82.281 kb on - strand at 82.352 kb on - strand, within AO353_00425 at 82.352 kb on - strand, within AO353_00425 at 82.376 kb on + strand, within AO353_00425 at 82.376 kb on + strand, within AO353_00425
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (N) remove 79,183 - AO353_00415 0.22 -1.0 79,183 - AO353_00415 0.22 +0.0 79,242 - AO353_00415 0.27 -1.0 79,490 + AO353_00415 0.46 +0.4 79,490 + AO353_00415 0.46 -3.4 79,490 + AO353_00415 0.46 +0.2 79,490 + AO353_00415 0.46 +0.6 79,491 - AO353_00415 0.46 +0.5 79,491 - AO353_00415 0.46 +0.5 79,491 - AO353_00415 0.46 +0.6 79,534 + AO353_00415 0.50 +0.7 79,540 + AO353_00415 0.50 -0.4 79,543 + AO353_00415 0.51 +1.9 79,544 - AO353_00415 0.51 +0.2 79,544 - AO353_00415 0.51 +1.9 79,579 + AO353_00415 0.53 +1.0 79,579 + AO353_00415 0.53 +1.3 79,579 + AO353_00415 0.53 +0.6 79,579 + AO353_00415 0.53 +0.2 79,579 + AO353_00415 0.53 +0.3 79,579 + AO353_00415 0.53 +0.4 79,579 + AO353_00415 0.53 -0.1 79,580 - AO353_00415 0.53 +0.5 79,580 - AO353_00415 0.53 -0.2 79,580 - AO353_00415 0.53 -1.8 79,627 + AO353_00415 0.57 -0.1 79,628 - AO353_00415 0.57 +2.9 79,712 - AO353_00415 0.64 +1.7 79,712 - AO353_00415 0.64 -0.8 79,740 + AO353_00415 0.66 -0.5 79,741 - AO353_00415 0.66 +0.7 79,741 - AO353_00415 0.66 +0.4 79,741 - AO353_00415 0.66 -0.4 79,886 + AO353_00415 0.78 -0.3 79,927 + AO353_00415 0.81 -2.0 79,927 + AO353_00415 0.81 +0.5 79,928 - AO353_00415 0.81 +0.2 80,177 + +0.4 80,177 + +1.6 80,177 + -0.0 80,178 - -0.0 80,252 - +0.3 80,262 + +0.4 80,262 + +0.5 80,262 + +0.0 80,262 + +0.3 80,262 + +0.2 80,262 + -0.8 80,262 + +1.0 80,263 - -1.3 80,263 - +0.8 80,263 - +0.2 80,301 + AO353_00420 0.11 +0.2 80,301 + AO353_00420 0.11 +0.7 80,301 + AO353_00420 0.11 +0.4 80,301 + AO353_00420 0.11 +0.2 80,301 + AO353_00420 0.11 -0.0 80,301 + AO353_00420 0.11 -0.3 80,302 - AO353_00420 0.11 -0.4 80,302 - AO353_00420 0.11 -1.4 80,302 - AO353_00420 0.11 +1.5 80,302 - AO353_00420 0.11 -0.0 80,302 - AO353_00420 0.11 -0.3 80,302 - +1.2 80,302 - AO353_00420 0.11 -0.1 80,302 - AO353_00420 0.11 +0.7 80,302 - AO353_00420 0.11 -0.5 80,317 + AO353_00420 0.12 +0.8 80,323 + AO353_00420 0.13 +1.7 80,448 + AO353_00420 0.23 +0.6 80,448 + AO353_00420 0.23 +0.9 80,448 + AO353_00420 0.23 -1.2 80,448 + AO353_00420 0.23 +1.0 80,448 + +0.3 80,448 + AO353_00420 0.23 +0.9 80,448 + AO353_00420 0.23 +0.5 80,448 + AO353_00420 0.23 +0.3 80,449 - AO353_00420 0.23 -0.1 80,449 - AO353_00420 0.23 +1.3 80,449 - AO353_00420 0.23 +1.6 80,449 - AO353_00420 0.23 -0.3 80,449 - AO353_00420 0.23 -2.8 80,449 - AO353_00420 0.23 -0.3 80,449 - AO353_00420 0.23 -0.4 80,544 + AO353_00420 0.31 +0.6 80,545 - AO353_00420 0.31 -0.1 80,559 + AO353_00420 0.32 +1.0 80,560 - AO353_00420 0.32 -0.8 80,631 + AO353_00420 0.38 -0.0 80,631 + AO353_00420 0.38 -0.7 80,631 + AO353_00420 0.38 +1.4 80,631 + AO353_00420 0.38 +0.4 80,631 + AO353_00420 0.38 +1.3 80,631 + AO353_00420 0.38 +0.5 80,631 + AO353_00420 0.38 +0.3 80,632 - AO353_00420 0.38 -0.1 80,632 - AO353_00420 0.38 -0.4 80,727 + AO353_00420 0.46 +1.2 80,727 + AO353_00420 0.46 -0.3 80,727 + AO353_00420 0.46 -1.1 80,728 - AO353_00420 0.46 +1.9 80,728 - AO353_00420 0.46 +0.6 80,737 + AO353_00420 0.47 -0.9 80,737 + AO353_00420 0.47 -0.4 80,738 - AO353_00420 0.47 +0.9 80,738 - AO353_00420 0.47 -0.1 80,955 + AO353_00420 0.65 +0.0 80,955 + AO353_00420 0.65 +0.7 80,955 + AO353_00420 0.65 -0.3 80,955 + AO353_00420 0.65 -0.5 80,956 - AO353_00420 0.65 -0.8 80,968 + AO353_00420 0.66 -0.5 80,968 + AO353_00420 0.66 -0.2 80,968 + AO353_00420 0.66 -0.6 80,968 + AO353_00420 0.66 -0.0 80,969 - AO353_00420 0.66 -0.8 81,015 + AO353_00420 0.70 +0.6 81,015 + AO353_00420 0.70 -0.4 81,015 + AO353_00420 0.70 +0.4 81,016 - AO353_00420 0.70 -0.3 81,019 - AO353_00420 0.70 +1.3 81,019 - AO353_00420 0.70 -0.2 81,019 - AO353_00420 0.70 +1.9 81,056 + AO353_00420 0.73 +0.2 81,056 + AO353_00420 0.73 +0.3 81,057 - AO353_00420 0.74 +0.8 81,057 - AO353_00420 0.74 +0.4 81,301 + +0.9 81,301 + +1.1 81,302 - -0.1 81,302 - +1.5 81,302 - +0.5 81,305 + -2.2 81,305 + +0.1 81,306 - -0.1 81,381 - -1.6 81,381 - +1.7 81,403 + -0.1 81,403 + -0.8 81,403 + -0.9 81,404 - -0.6 81,412 - -0.8 81,413 + +1.4 81,413 + +0.4 81,413 + -0.8 81,413 + +0.8 81,413 + +0.2 81,414 - -1.1 81,446 - +0.9 81,468 + -0.4 81,468 + -0.2 81,469 - -0.3 81,585 - -2.0 81,672 + -1.4 81,745 + -0.4 81,745 + -1.1 81,746 - +0.1 81,830 + +0.7 81,946 + +0.1 81,969 + -1.8 81,970 - +0.0 81,970 - -0.7 82,018 + -0.3 82,043 + -0.2 82,044 - +0.5 82,046 - +1.4 82,170 - +0.3 82,280 + +0.9 82,280 + -0.2 82,280 + -0.4 82,281 - -0.2 82,281 - -2.6 82,281 - +0.1 82,281 - +3.2 82,281 - +0.2 82,281 - +0.7 82,352 - AO353_00425 0.16 -0.7 82,352 - AO353_00425 0.16 +0.1 82,376 + AO353_00425 0.18 -0.7 82,376 + AO353_00425 0.18 -1.2
Or see this region's nucleotide sequence