Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1645

Experiment: Minimal media pH6

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_1644 and Pf1N1B4_1645 are separated by 202 nucleotidesPf1N1B4_1645 and Pf1N1B4_1646 are separated by 30 nucleotidesPf1N1B4_1646 and Pf1N1B4_5185 are separated by 78 nucleotides Pf1N1B4_1644 - SAM-dependent methyltransferases, at 1,886,800 to 1,888,002 _1644 Pf1N1B4_1645 - hypothetical protein, at 1,888,205 to 1,888,318 _1645 Pf1N1B4_1646 - SAM-dependent methyltransferases, at 1,888,349 to 1,889,170 _1646 Pf1N1B4_5185 - tRNA-Thr-TGT, at 1,889,249 to 1,889,321 _5185 Position (kb) 1888 1889Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1887.362 kb on + strandat 1887.362 kb on + strand, within Pf1N1B4_1644at 1887.363 kb on - strand, within Pf1N1B4_1644at 1887.478 kb on + strand, within Pf1N1B4_1644at 1887.478 kb on + strand, within Pf1N1B4_1644at 1887.502 kb on + strand, within Pf1N1B4_1644at 1887.502 kb on + strand, within Pf1N1B4_1644at 1887.502 kb on + strand, within Pf1N1B4_1644at 1887.502 kb on + strand, within Pf1N1B4_1644at 1887.502 kb on + strand, within Pf1N1B4_1644at 1887.503 kb on - strand, within Pf1N1B4_1644at 1887.503 kb on - strand, within Pf1N1B4_1644at 1887.503 kb on - strand, within Pf1N1B4_1644at 1887.503 kb on - strand, within Pf1N1B4_1644at 1887.503 kb on - strand, within Pf1N1B4_1644at 1887.503 kb on - strand, within Pf1N1B4_1644at 1887.539 kb on + strand, within Pf1N1B4_1644at 1887.539 kb on + strand, within Pf1N1B4_1644at 1887.539 kb on + strand, within Pf1N1B4_1644at 1887.540 kb on - strand, within Pf1N1B4_1644at 1887.540 kb on - strand, within Pf1N1B4_1644at 1887.540 kb on - strand, within Pf1N1B4_1644at 1887.540 kb on - strand, within Pf1N1B4_1644at 1887.682 kb on + strand, within Pf1N1B4_1644at 1887.682 kb on + strand, within Pf1N1B4_1644at 1887.682 kb on + strand, within Pf1N1B4_1644at 1887.767 kb on + strand, within Pf1N1B4_1644at 1887.767 kb on + strandat 1887.795 kb on + strand, within Pf1N1B4_1644at 1887.795 kb on + strand, within Pf1N1B4_1644at 1887.852 kb on - strand, within Pf1N1B4_1644at 1887.852 kb on - strand, within Pf1N1B4_1644at 1887.891 kb on - strandat 1887.891 kb on - strandat 1887.891 kb on - strandat 1887.925 kb on + strandat 1887.981 kb on - strandat 1887.981 kb on - strandat 1887.981 kb on - strandat 1888.000 kb on + strandat 1888.000 kb on + strandat 1888.000 kb on + strandat 1888.000 kb on + strandat 1888.001 kb on - strandat 1888.001 kb on - strandat 1888.001 kb on - strandat 1888.022 kb on - strandat 1888.068 kb on - strandat 1888.068 kb on - strandat 1888.198 kb on + strandat 1888.198 kb on + strandat 1888.199 kb on - strandat 1888.199 kb on - strandat 1888.199 kb on - strandat 1888.207 kb on - strandat 1888.207 kb on - strandat 1888.277 kb on + strand, within Pf1N1B4_1645at 1888.278 kb on - strand, within Pf1N1B4_1645at 1888.278 kb on - strand, within Pf1N1B4_1645at 1888.278 kb on - strand, within Pf1N1B4_1645at 1888.278 kb on - strand, within Pf1N1B4_1645at 1888.279 kb on + strand, within Pf1N1B4_1645at 1888.279 kb on + strand, within Pf1N1B4_1645at 1888.279 kb on + strand, within Pf1N1B4_1645at 1888.279 kb on + strand, within Pf1N1B4_1645at 1888.279 kb on + strand, within Pf1N1B4_1645at 1888.279 kb on + strand, within Pf1N1B4_1645at 1888.280 kb on - strand, within Pf1N1B4_1645at 1888.280 kb on - strand, within Pf1N1B4_1645at 1888.280 kb on - strand, within Pf1N1B4_1645at 1888.280 kb on - strand, within Pf1N1B4_1645at 1888.280 kb on - strand, within Pf1N1B4_1645at 1888.280 kb on - strand, within Pf1N1B4_1645at 1888.280 kb on - strand, within Pf1N1B4_1645at 1888.280 kb on - strand, within Pf1N1B4_1645at 1888.287 kb on + strand, within Pf1N1B4_1645at 1888.287 kb on + strand, within Pf1N1B4_1645at 1888.287 kb on + strand, within Pf1N1B4_1645at 1888.287 kb on + strand, within Pf1N1B4_1645at 1888.287 kb on + strand, within Pf1N1B4_1645at 1888.287 kb on + strand, within Pf1N1B4_1645at 1888.287 kb on + strand, within Pf1N1B4_1645at 1888.287 kb on + strand, within Pf1N1B4_1645at 1888.287 kb on + strand, within Pf1N1B4_1645at 1888.287 kb on + strand, within Pf1N1B4_1645at 1888.287 kb on + strand, within Pf1N1B4_1645at 1888.287 kb on + strand, within Pf1N1B4_1645at 1888.288 kb on - strand, within Pf1N1B4_1645at 1888.288 kb on - strand, within Pf1N1B4_1645at 1888.288 kb on - strand, within Pf1N1B4_1645at 1888.288 kb on - strand, within Pf1N1B4_1645at 1888.288 kb on - strand, within Pf1N1B4_1645at 1888.288 kb on - strand, within Pf1N1B4_1645at 1888.288 kb on - strand, within Pf1N1B4_1645at 1888.288 kb on - strand, within Pf1N1B4_1645at 1888.288 kb on - strand, within Pf1N1B4_1645at 1888.288 kb on - strand, within Pf1N1B4_1645at 1888.288 kb on - strand, within Pf1N1B4_1645at 1888.406 kb on + strandat 1888.406 kb on + strandat 1888.407 kb on - strandat 1888.407 kb on - strandat 1888.424 kb on + strandat 1888.424 kb on + strandat 1888.424 kb on + strandat 1888.424 kb on + strandat 1888.424 kb on + strandat 1888.424 kb on + strandat 1888.424 kb on + strandat 1888.424 kb on + strandat 1888.425 kb on - strandat 1888.425 kb on - strandat 1888.425 kb on - strandat 1888.425 kb on - strandat 1888.478 kb on + strand, within Pf1N1B4_1646at 1888.478 kb on + strand, within Pf1N1B4_1646at 1888.479 kb on - strand, within Pf1N1B4_1646at 1888.479 kb on - strand, within Pf1N1B4_1646at 1888.479 kb on - strand, within Pf1N1B4_1646at 1888.479 kb on - strand, within Pf1N1B4_1646at 1888.479 kb on - strand, within Pf1N1B4_1646at 1888.523 kb on + strandat 1888.524 kb on - strand, within Pf1N1B4_1646at 1888.527 kb on - strand, within Pf1N1B4_1646at 1888.607 kb on + strand, within Pf1N1B4_1646at 1888.607 kb on + strand, within Pf1N1B4_1646at 1888.607 kb on + strand, within Pf1N1B4_1646at 1888.608 kb on - strand, within Pf1N1B4_1646at 1888.608 kb on - strand, within Pf1N1B4_1646at 1888.608 kb on - strand, within Pf1N1B4_1646at 1888.608 kb on - strand, within Pf1N1B4_1646at 1888.931 kb on + strand, within Pf1N1B4_1646at 1888.931 kb on + strand, within Pf1N1B4_1646at 1888.931 kb on + strand, within Pf1N1B4_1646at 1888.931 kb on + strand, within Pf1N1B4_1646at 1888.932 kb on - strand, within Pf1N1B4_1646at 1888.932 kb on - strand, within Pf1N1B4_1646at 1888.932 kb on - strand, within Pf1N1B4_1646at 1888.932 kb on - strand, within Pf1N1B4_1646at 1888.932 kb on - strand, within Pf1N1B4_1646at 1888.932 kb on - strand, within Pf1N1B4_1646at 1888.932 kb on - strand, within Pf1N1B4_1646at 1888.932 kb on - strand, within Pf1N1B4_1646at 1888.932 kb on - strand, within Pf1N1B4_1646at 1888.932 kb on - strand, within Pf1N1B4_1646at 1888.932 kb on - strand, within Pf1N1B4_1646at 1888.932 kb on - strand, within Pf1N1B4_1646at 1888.932 kb on - strand, within Pf1N1B4_1646at 1888.932 kb on - strand, within Pf1N1B4_1646at 1888.932 kb on - strand, within Pf1N1B4_1646at 1888.934 kb on + strand, within Pf1N1B4_1646at 1888.934 kb on + strandat 1888.934 kb on + strand, within Pf1N1B4_1646at 1888.935 kb on - strand, within Pf1N1B4_1646at 1888.935 kb on - strand, within Pf1N1B4_1646at 1888.935 kb on - strand, within Pf1N1B4_1646at 1889.185 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Minimal media pH6
remove
1,887,362 + +1.1
1,887,362 + Pf1N1B4_1644 0.47 -1.3
1,887,363 - Pf1N1B4_1644 0.47 -0.8
1,887,478 + Pf1N1B4_1644 0.56 -0.1
1,887,478 + Pf1N1B4_1644 0.56 -0.1
1,887,502 + Pf1N1B4_1644 0.58 -0.2
1,887,502 + Pf1N1B4_1644 0.58 +0.3
1,887,502 + Pf1N1B4_1644 0.58 -0.1
1,887,502 + Pf1N1B4_1644 0.58 -0.1
1,887,502 + Pf1N1B4_1644 0.58 +0.0
1,887,503 - Pf1N1B4_1644 0.58 +0.6
1,887,503 - Pf1N1B4_1644 0.58 +0.6
1,887,503 - Pf1N1B4_1644 0.58 -0.5
1,887,503 - Pf1N1B4_1644 0.58 -1.4
1,887,503 - Pf1N1B4_1644 0.58 -1.5
1,887,503 - Pf1N1B4_1644 0.58 +1.5
1,887,539 + Pf1N1B4_1644 0.61 +0.8
1,887,539 + Pf1N1B4_1644 0.61 +0.9
1,887,539 + Pf1N1B4_1644 0.61 +0.1
1,887,540 - Pf1N1B4_1644 0.62 -0.3
1,887,540 - Pf1N1B4_1644 0.62 -0.0
1,887,540 - Pf1N1B4_1644 0.62 +0.9
1,887,540 - Pf1N1B4_1644 0.62 -0.2
1,887,682 + Pf1N1B4_1644 0.73 -0.9
1,887,682 + Pf1N1B4_1644 0.73 +0.1
1,887,682 + Pf1N1B4_1644 0.73 -0.0
1,887,767 + Pf1N1B4_1644 0.80 +1.0
1,887,767 + -1.3
1,887,795 + Pf1N1B4_1644 0.83 +0.3
1,887,795 + Pf1N1B4_1644 0.83 +0.1
1,887,852 - Pf1N1B4_1644 0.87 -0.0
1,887,852 - Pf1N1B4_1644 0.87 -0.1
1,887,891 - -2.5
1,887,891 - -1.0
1,887,891 - -2.2
1,887,925 + +0.7
1,887,981 - +0.9
1,887,981 - +0.6
1,887,981 - +1.8
1,888,000 + -1.3
1,888,000 + +2.7
1,888,000 + +0.2
1,888,000 + +0.2
1,888,001 - -1.1
1,888,001 - -0.0
1,888,001 - +1.2
1,888,022 - +0.2
1,888,068 - -0.9
1,888,068 - +1.3
1,888,198 + +0.3
1,888,198 + +1.2
1,888,199 - -0.2
1,888,199 - +0.6
1,888,199 - +0.1
1,888,207 - +0.3
1,888,207 - -1.8
1,888,277 + Pf1N1B4_1645 0.63 +0.4
1,888,278 - Pf1N1B4_1645 0.64 -0.4
1,888,278 - Pf1N1B4_1645 0.64 +0.6
1,888,278 - Pf1N1B4_1645 0.64 +0.0
1,888,278 - Pf1N1B4_1645 0.64 -0.3
1,888,279 + Pf1N1B4_1645 0.65 -0.9
1,888,279 + Pf1N1B4_1645 0.65 +0.0
1,888,279 + Pf1N1B4_1645 0.65 -1.1
1,888,279 + Pf1N1B4_1645 0.65 +0.5
1,888,279 + Pf1N1B4_1645 0.65 +0.6
1,888,279 + Pf1N1B4_1645 0.65 -0.9
1,888,280 - Pf1N1B4_1645 0.66 +0.4
1,888,280 - Pf1N1B4_1645 0.66 -0.1
1,888,280 - Pf1N1B4_1645 0.66 +0.3
1,888,280 - Pf1N1B4_1645 0.66 -1.5
1,888,280 - Pf1N1B4_1645 0.66 +1.0
1,888,280 - Pf1N1B4_1645 0.66 -0.1
1,888,280 - Pf1N1B4_1645 0.66 -0.1
1,888,280 - Pf1N1B4_1645 0.66 -0.6
1,888,287 + Pf1N1B4_1645 0.72 -0.5
1,888,287 + Pf1N1B4_1645 0.72 +0.5
1,888,287 + Pf1N1B4_1645 0.72 -0.1
1,888,287 + Pf1N1B4_1645 0.72 +0.6
1,888,287 + Pf1N1B4_1645 0.72 -0.0
1,888,287 + Pf1N1B4_1645 0.72 -0.4
1,888,287 + Pf1N1B4_1645 0.72 +0.2
1,888,287 + Pf1N1B4_1645 0.72 +0.5
1,888,287 + Pf1N1B4_1645 0.72 -1.5
1,888,287 + Pf1N1B4_1645 0.72 -0.4
1,888,287 + Pf1N1B4_1645 0.72 -0.2
1,888,287 + Pf1N1B4_1645 0.72 +0.9
1,888,288 - Pf1N1B4_1645 0.73 -0.5
1,888,288 - Pf1N1B4_1645 0.73 -0.1
1,888,288 - Pf1N1B4_1645 0.73 -2.2
1,888,288 - Pf1N1B4_1645 0.73 +0.5
1,888,288 - Pf1N1B4_1645 0.73 +1.5
1,888,288 - Pf1N1B4_1645 0.73 +0.5
1,888,288 - Pf1N1B4_1645 0.73 -0.6
1,888,288 - Pf1N1B4_1645 0.73 -0.6
1,888,288 - Pf1N1B4_1645 0.73 -0.0
1,888,288 - Pf1N1B4_1645 0.73 +1.2
1,888,288 - Pf1N1B4_1645 0.73 +0.4
1,888,406 + -1.2
1,888,406 + +1.2
1,888,407 - -0.7
1,888,407 - +1.1
1,888,424 + -0.5
1,888,424 + +0.1
1,888,424 + -0.0
1,888,424 + -1.0
1,888,424 + -1.7
1,888,424 + +0.4
1,888,424 + -0.9
1,888,424 + +2.1
1,888,425 - +0.3
1,888,425 - -0.8
1,888,425 - -0.0
1,888,425 - -0.3
1,888,478 + Pf1N1B4_1646 0.16 +1.0
1,888,478 + Pf1N1B4_1646 0.16 +1.2
1,888,479 - Pf1N1B4_1646 0.16 -0.3
1,888,479 - Pf1N1B4_1646 0.16 -0.0
1,888,479 - Pf1N1B4_1646 0.16 +0.1
1,888,479 - Pf1N1B4_1646 0.16 +0.5
1,888,479 - Pf1N1B4_1646 0.16 -0.0
1,888,523 + +1.5
1,888,524 - Pf1N1B4_1646 0.21 -0.1
1,888,527 - Pf1N1B4_1646 0.22 +0.9
1,888,607 + Pf1N1B4_1646 0.31 -1.9
1,888,607 + Pf1N1B4_1646 0.31 +0.0
1,888,607 + Pf1N1B4_1646 0.31 +1.4
1,888,608 - Pf1N1B4_1646 0.32 -1.4
1,888,608 - Pf1N1B4_1646 0.32 -0.7
1,888,608 - Pf1N1B4_1646 0.32 -1.6
1,888,608 - Pf1N1B4_1646 0.32 +1.0
1,888,931 + Pf1N1B4_1646 0.71 -0.9
1,888,931 + Pf1N1B4_1646 0.71 +0.4
1,888,931 + Pf1N1B4_1646 0.71 -0.8
1,888,931 + Pf1N1B4_1646 0.71 -2.9
1,888,932 - Pf1N1B4_1646 0.71 +1.8
1,888,932 - Pf1N1B4_1646 0.71 -0.8
1,888,932 - Pf1N1B4_1646 0.71 +1.2
1,888,932 - Pf1N1B4_1646 0.71 -0.4
1,888,932 - Pf1N1B4_1646 0.71 +1.4
1,888,932 - Pf1N1B4_1646 0.71 +1.3
1,888,932 - Pf1N1B4_1646 0.71 -0.8
1,888,932 - Pf1N1B4_1646 0.71 -0.3
1,888,932 - Pf1N1B4_1646 0.71 -0.3
1,888,932 - Pf1N1B4_1646 0.71 -1.6
1,888,932 - Pf1N1B4_1646 0.71 -0.2
1,888,932 - Pf1N1B4_1646 0.71 +1.7
1,888,932 - Pf1N1B4_1646 0.71 +0.8
1,888,932 - Pf1N1B4_1646 0.71 -1.0
1,888,932 - Pf1N1B4_1646 0.71 +0.9
1,888,934 + Pf1N1B4_1646 0.71 -0.1
1,888,934 + -0.0
1,888,934 + Pf1N1B4_1646 0.71 -0.3
1,888,935 - Pf1N1B4_1646 0.71 +1.3
1,888,935 - Pf1N1B4_1646 0.71 +0.8
1,888,935 - Pf1N1B4_1646 0.71 -0.2
1,889,185 - -0.1

Or see this region's nucleotide sequence